IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
725	 29.73	+1	943971..944192	-	73	26554177	-	MYPE7210	-	hypothetical protein
726	 32.88	+1	944315..945868	-	517	26554178	ulaA	MYPE7220	-	ascorbate-specific PTS system enzyme IIC
727	 26.55	0	945903..946079	-	58	26554179	-	MYPE7230	-	hypothetical protein
728	 33.62	+2	946265..946957	-	230	26554180	-	MYPE7240	-	phosphotriesterase family protein
729	 23.89	0	947297..949975	-	892	26554181	-	MYPE7250	-	hypothetical protein
730	 25.95	0	949978..953469	-	1163	26554182	-	MYPE7260	-	hypothetical protein
731	 23.57	0	953497..955299	-	600	26554183	-	MYPE7270	-	integral membrane protein
732	 23.82	0	955305..956261	-	318	26554184	-	MYPE7280	-	ABC transporter ATP-binding protein
733	 26.55	0	956939..957454	-	171	26554185	-	MYPE7290	-	hypothetical protein
734	 28.54	0	957596..960976	-	1126	26554186	-	MYPE7300	-	hypothetical protein
735	 27.09	0	961313..962641	+	442	26554187	-	MYPE7310	-	hypothetical protein
736	 29.30	0	962780..966100	-	1106	26554188	-	MYPE7320	-	hypothetical protein
737	 29.15	0	966342..967895	-	517	26554189	-	MYPE7330	-	P35 lipoprotein
738	 26.19	0	968615..968824	-	69	26554190	-	MYPE7340	-	hypothetical protein
739	 30.70	+1	968984..969325	-	113	26554191	-	MYPE7350	-	hypothetical protein
740	 28.35	0	969560..970021	-	153	26554192	-	MYPE7360	-	hypothetical protein
741	 28.69	0	970527..971624	-	365	26554193	-	MYPE7370	-	P35 lipoprotein
742	 29.23	0	971999..973144	-	381	26554194	-	MYPE7375	-	putative P35 lipoprotein
743	 33.33	+2	973092..973526	-	144	26554195	-	MYPE7380	-	putative P35 lipoprotein
744	 29.94	+1	973865..975013	-	382	26554196	-	MYPE7400	-	P35 lipoprotein
745	 28.68	0	975304..976701	-	465	26554197	-	MYPE7410	-	hypothetical protein
746	 24.83	0	976706..977152	-	148	26554198	-	MYPE7420	-	nitrogen fixation protein NifU
747	 26.16	0	977139..978365	-	408	26554199	-	MYPE7430	-	aminotransferase NifS
748	 23.03	0	978367..978987	-	206	26554200	-	MYPE7440	-	hypothetical protein
749	 27.44	0	979006..979752	-	248	26554201	-	MYPE7450	-	ABC transporter ATP-binding protein
750	 23.00	0	979900..980586	-	228	26554202	-	MYPE7460	-	acetyltransferase (GNAT) family protein
751	 21.10	-1	980991..983066	-	691	26554203	-	MYPE7470	-	ABC transporter ATP-binding protein
752	 25.29	0	983164..983673	-	169	26554204	-	MYPE7480	-	hypothetical protein
753	 25.53	0	984101..984664	-	187	26554205	-	MYPE7490	-	hypothetical protein
754	 25.41	0	985032..985574	-	180	26554206	-	MYPE7500	-	hypothetical protein
755	 25.05	0	986000..986542	-	180	26554207	-	MYPE7510	-	hypothetical protein
756	 26.14	0	986910..987368	-	152	26554208	-	MYPE7520	-	hypothetical protein
757	 27.20	0	987711..989504	-	597	26554209	-	MYPE7530	-	ABC transporter ATP-binding protein
758	 27.01	0	989507..991276	-	589	26554210	-	MYPE7540	-	ABC transporter ATP-binding protein
759	 30.54	+1	991633..992241	-	202	26554211	rpsD	MYPE7550	-	30S ribosomal protein S4
760	 18.82	-2	992543..993472	+	309	26554212	-	MYPE7560	-	hypothetical protein
761	 30.96	+1	993492..995807	-	771	26554213	-	MYPE7570	-	putative lipoprotein
762	 28.93	0	995770..996405	-	211	26554214	-	MYPE7580	-	putative lipoprotein
763	 30.25	+1	996518..999436	-	972	26554215	-	MYPE7590	-	putative lipoprotein
764	 29.99	+1	999563..1002460	-	965	26554216	-	MYPE7600	-	putative lipoprotein
765	 29.97	+1	1002603..1005635	-	1010	26554217	-	MYPE7610	-	putative lipoprotein
766	 30.04	+1	1005790..1008762	-	990	26554218	-	MYPE7620	-	putative lipoprotein
767	 20.68	-1	1008961..1009545	-	194	26554219	-	MYPE7630	-	hypothetical protein
768	 24.25	0	1009740..1010477	-	245	26554220	-	MYPE7640	-	hypothetical protein
769	 23.07	0	1010553..1011935	-	460	26554221	-	MYPE7650	-	hypothetical protein
770	 28.42	0	1012111..1015242	-	1043	26554222	-	MYPE7660	-	hypothetical protein
771	 28.22	0	1015884..1018013	-	709	26554223	-	MYPE7670	-	PTS system fructose-specific enzyme IIABC component
772	 19.70	-1	1018103..1018366	-	87	26554224	-	MYPE7680	-	hypothetical protein
773	 19.12	-2	1018351..1020285	-	644	26554225	-	MYPE7690	-	putative regulatory protein
774	 25.11	0	1020372..1021295	-	307	26554226	-	MYPE7700	-	mannose-6-phosphate isomerase
775	 28.22	0	1021478..1024606	-	1042	26554227	-	MYPE7710	-	hypothetical protein
776	 27.99	0	1024895..1028020	-	1041	26554228	-	MYPE7720	-	hypothetical protein
777	 28.78	0	1028231..1031242	-	1003	26554229	-	MYPE7730	-	hypothetical protein
778	 23.83	0	1031624..1032538	-	304	26554230	-	MYPE7750	-	1-phosphofructokinase
779	 29.59	+1	1032492..1034708	-	738	26554231	-	MYPE7760	-	PTS system fructose-specific IIABC component
780	 24.90	0	1034698..1035468	-	256	26554232	-	MYPE7770	-	transcriptional regulator DeoR family protein
781	 25.18	0	1035998..1037554	+	518	26554233	-	MYPE7780	-	IS1202 transposase
782	 29.96	+1	1037799..1041953	-	1384	26554234	-	MYPE7790	-	hypothetical protein
783	 29.73	+1	1042320..1046654	-	1444	26554235	-	MYPE7800	-	hypothetical protein
784	 29.55	0	1046891..1050640	-	1249	26554236	-	MYPE7810	-	hypothetical protein
785	 32.09	+1	1050844..1051245	-	133	26554237	-	MYPE7820	-	hypothetical protein
786	 23.92	0	1051528..1052781	+	417	26554238	-	MYPE7830	-	hypothetical protein
787	 25.24	0	1053118..1053747	-	209	26554239	-	MYPE7840	-	orotate phosphoribosyltransferase
788	 26.44	0	1053764..1054459	-	231	26554240	-	MYPE7850	-	orotidine-5-phosphate decarboxylase
789	 29.75	+1	1054461..1055381	-	306	26554241	-	MYPE7860	-	dihydroorotate dehydrogenase 1B
790	 26.19	0	1055385..1056182	-	265	26554242	-	MYPE7870	-	dihydroorotate dehydrogenase electron transfer subunit
791	 26.15	0	1056267..1057547	-	426	26554243	pyrC	MYPE7880	-	dihydroorotase
792	 26.58	0	1057556..1058458	-	300	26554244	pyrB	MYPE7890	-	aspartate carbamoyltransferase catalytic subunit
793	 27.39	0	1058458..1058979	-	173	26554245	-	MYPE7900	-	pyrimidine regulatory protein PyrR
794	 25.85	0	1059326..1062826	-	1166	26554246	-	MYPE7910	-	hypothetical protein
795	 27.01	0	1062987..1066511	-	1174	26554247	-	MYPE7920	-	hypothetical protein
796	 27.06	0	1066617..1070204	-	1195	26554248	-	MYPE7930	-	hypothetical protein
797	 27.24	0	1070374..1071849	-	491	26554249	-	MYPE7940	-	hypothetical protein
798	 31.28	+1	1071969..1072748	+	259	26554250	-	MYPE7950	-	hypothetical protein
799	 26.70	0	1072817..1074052	-	411	26554251	-	MYPE7960	-	tyrosyl-tRNA synthetase
800	 27.59	0	1074084..1074884	-	266	26554252	-	MYPE7970	-	aldo/keto reductase
801	 27.75	0	1075160..1075678	+	172	26554253	-	MYPE7980	-	hypothetical protein
802	 20.73	-1	1075683..1076396	+	237	26554254	-	MYPE7990	-	glucose-inhibited division protein GidB
803	 20.57	-1	1076383..1077048	+	221	26554255	-	MYPE8000	-	hypothetical protein
804	 25.62	0	1077052..1078464	-	470	26554256	-	MYPE8010	-	prolyl-tRNA synthetase
805	 27.58	0	1078466..1079212	-	248	26554257	-	MYPE8020	-	hypothetical protein
806	 24.16	0	1079214..1080587	-	457	26554258	-	MYPE8030	-	ATP-dependent RNA helicase
807	 30.14	+1	1080743..1081462	-	239	26554259	-	MYPE8040	-	hypothetical protein
808	 24.14	0	1081507..1083735	-	742	26554260	-	MYPE8050	-	hypothetical protein
809	 22.44	-1	1083834..1084439	-	201	26554261	recR	MYPE8060	-	recombination protein RecR
810	 25.61	0	1084442..1084726	-	94	26554262	-	MYPE8070	-	hypothetical protein
811	 23.93	0	1084733..1087147	-	804	26554263	-	MYPE8080	-	DNA polymerase III subunits gamma and tau
812	 25.77	0	1087299..1088012	-	237	26554264	-	MYPE8090	-	hypothetical protein
813	 24.16	0	1088005..1088658	-	217	26554265	-	MYPE8100	-	hypothetical protein
814	 24.90	0	1088734..1089516	-	260	26554266	-	MYPE8110	-	hypothetical protein
815	 21.57	-1	1089527..1090861	-	444	26554267	trmE	MYPE8120	-	tRNA modification GTPase TrmE
816	 19.93	-1	1090864..1091691	-	275	26554268	-	MYPE8130	-	DNA polymerase III subunit delta'
817	 28.22	0	1091701..1092345	-	214	26554269	-	MYPE8140	-	thymidylate kinase
818	 28.92	0	1092593..1093408	-	271	26554270	-	MYPE8150	-	hypothetical protein
819	 30.16	+1	1093589..1095004	-	471	26554271	-	MYPE8160	-	phosphoglycerate kinase
820	 31.94	+1	1095027..1096028	-	333	26554272	-	MYPE8170	-	glyceraladehyde-3-phosphate dehydrogenase
821	 25.64	0	1096291..1097109	-	272	26554273	-	MYPE8180	-	integrase
822	 24.04	0	1097228..1098475	+	415	26554274	-	MYPE8190	-	type I restriction-modification system S subunit
823	 24.81	0	1098599..1100158	-	519	26554275	-	MYPE8200	-	type I restriction-modification system S subunit
824	 27.22	0	1100165..1101637	-	490	26554276	-	MYPE8210	-	type I restriction-modification system M subunit
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.