IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
28	 23.46	0	38104..38559	-	151	26553480	-	MYPE280	-	hypothetical protein
29	 34.04	+2	39162..39584	+	140	26553481	rpsL	MYPE290	-	30S ribosomal protein S12
30	 28.63	0	39599..40066	+	155	26553482	-	MYPE300	-	30S ribosomal protein S7
31	 32.94	+1	40085..42133	+	682	26553483	-	MYPE310	-	elongation factor G
32	 35.78	+2	42293..43477	+	394	26553484	tuf	MYPE320	-	elongation factor Tu
33	 35.00	+2	43741..44757	+	338	26553485	-	MYPE330	-	hypothetical protein
34	 27.40	0	44860..45213	+	117	26553486	-	MYPE340	-	hypothetical protein
35	 20.94	-1	45182..45544	+	120	26553487	-	MYPE350	-	holo-acyl carrier protein synthase
36	 28.09	0	45685..45951	+	88	26553488	-	MYPE360	-	hypothetical protein
37	 26.08	0	46091..46903	+	270	26553489	-	MYPE370	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
38	 23.97	0	46920..47795	+	291	26553490	-	MYPE380	-	hypothetical protein
39	 30.30	+1	47785..48378	+	197	26553491	scpB	MYPE390	-	segregation and condensation protein B
40	 28.51	0	48388..48615	+	75	26553492	-	MYPE400	-	hypothetical protein
41	 22.99	0	48615..49175	+	186	26553493	-	MYPE410	-	GTPase EngB
42	 24.40	0	49185..51803	+	872	26553494	-	MYPE420	-	valyl-tRNA synthetase
43	 24.84	0	52584..53678	+	364	26553495	-	MYPE430	-	competence protein
44	 20.89	-1	53570..55570	+	666	26553496	-	MYPE440	-	hypothetical protein
45	 20.23	-1	55583..56521	+	312	26553497	-	MYPE450	-	hypothetical protein
46	 27.01	0	56499..57842	+	447	26553498	-	MYPE460	-	putative integral membrane protein
47	 26.21	0	57935..58846	+	303	26553499	-	MYPE470	-	putative integral membrane protein
48	 28.27	0	58901..59137	-	78	26553500	-	MYPE480	-	ribosomal protein S20
49	 24.78	0	59212..60006	+	264	26553501	-	MYPE490	-	hypothetical protein
50	 25.29	0	59967..60923	+	318	26553502	-	MYPE500	-	methionyl-tRNA formyltransferase
51	 29.45	0	60933..62735	+	600	26553503	-	MYPE510	-	GTP-binding protein LepA
52	 27.30	0	62857..64464	+	535	26553504	-	MYPE520	-	CTP synthetase
53	 22.42	-1	64475..65299	+	274	26553505	-	MYPE530	-	GTPase
54	 24.16	0	65383..65916	+	177	26553506	-	MYPE540	-	hypothetical protein
55	 18.75	-2	66016..66447	+	143	26553507	-	MYPE550	-	hypothetical protein
56	 28.71	0	66469..67377	+	302	26553508	-	MYPE560	-	F0F1 ATP synthase subunit A
57	 32.49	+1	67456..67692	+	78	26553509	-	MYPE570	-	ATP synthase subunit C
58	 25.85	0	67714..68301	+	195	26553510	-	MYPE580	-	ATP synthase subunit B
59	 22.05	-1	68318..68884	+	188	26553511	-	MYPE590	-	ATP synthase subunit delta
60	 28.34	0	68887..70428	+	513	26553512	-	MYPE600	-	F0F1 ATP synthase subunit alpha
61	 24.27	0	70439..71299	+	286	26553513	-	MYPE610	-	F0F1 ATP synthase subunit gamma
62	 31.63	+1	72168..73637	+	489	161723286	-	MYPE620	-	F0F1 ATP synthase subunit beta
63	 23.28	0	73649..74056	+	135	26553515	-	MYPE630	-	ATP synthase subunit epsilon
64	 27.78	0	74156..74443	+	95	161723285	rpmE	MYPE640	-	50S ribosomal protein L31
65	 28.98	0	74531..75610	+	359	26553517	prfA	MYPE650	-	peptide chain release factor 1
66	 23.94	0	75576..76448	+	290	26553518	-	MYPE660	-	S-adenosylmethionine-dependent methyltransferase
67	 22.12	-1	76451..77092	+	213	26553519	-	MYPE670	-	translation factor
68	 26.21	0	77058..77534	+	158	26553520	-	MYPE680	-	ribose 5-phosphate and galactose-6-phosphate isomerase
69	 23.79	0	77536..78258	+	240	26553521	-	MYPE690	-	putative two-component response regulator
70	 29.90	+1	78521..79102	+	193	26553522	-	MYPE700	-	intracellular protease
71	 26.35	0	79238..80254	+	338	26553523	hrcA	MYPE710	-	heat-inducible transcription repressor
72	 18.68	-2	80229..80774	+	181	26553524	-	MYPE720	-	hypothetical protein
73	 25.50	0	80780..82618	+	612	26553525	-	MYPE730	-	1-deoxy-D-xylulose-5-phosphate synthase
74	 21.32	-1	82797..83687	+	296	26553526	-	MYPE740	-	hypothetical protein
75	 22.42	-1	83702..84031	-	109	26553527	-	MYPE750	-	hypothetical protein
76	 27.78	0	84059..84310	+	83	26553528	-	MYPE760	-	nitrogen fixation protein
77	 28.64	0	84320..86344	+	674	26553529	-	MYPE770	-	transketolase
78	 28.79	0	86502..87998	+	498	26553530	-	MYPE780	-	pyruvate kinase
79	 29.70	+1	88217..92344	+	1375	26553531	rpoB	MYPE790	-	DNA-directed RNA polymerase subunit beta
80	 29.04	0	92365..96231	+	1288	26553532	-	MYPE800	-	DNA-directed RNA polymerase subunit beta'
81	 27.44	0	96331..96771	+	146	26553533	rplM	MYPE810	-	50S ribosomal protein L13
82	 30.53	+1	96789..97181	+	130	26553534	rpsI	MYPE820	-	30S ribosomal protein S9
83	 23.74	0	97919..98137	+	72	26553535	-	MYPE830	-	hypothetical protein
84	 22.69	0	98295..98510	+	71	26553536	-	MYPE835	-	hypothetical protein
85	 26.16	0	98853..99674	+	273	26553537	-	MYPE840	-	haloacid dehalogenase-like hydrolase
86	 28.74	0	100051..102228	-	725	26553538	-	MYPE850	-	ribonucleotide-diphosphate reductase subunit alpha
87	 26.44	0	102261..102710	-	149	26553539	nrdI	MYPE860	-	ribonucleotide reductase stimulatory protein
88	 30.10	+1	102713..103732	-	339	26553540	nrdF	MYPE870	-	ribonucleotide-diphosphate reductase subunit beta
89	 26.25	0	104027..109387	+	1786	26553541	-	MYPE880	-	permease
90	 26.77	0	109575..114956	+	1793	26553542	-	MYPE890	-	permease
91	 27.07	0	115033..116757	-	574	26553543	-	MYPE900	-	hypothetical protein
92	 24.01	0	116865..117722	-	285	26553544	-	MYPE910	-	putative membrane integrated oxidoreductase
93	 23.93	0	117724..118446	-	240	26553545	-	MYPE920	-	hypothetical protein
94	 20.62	-1	118459..118875	-	138	26553546	-	MYPE930	-	hypothetical protein
95	 29.99	+1	119066..120202	+	378	26553547	-	MYPE940	-	S-adenosylmethionine synthetase
96	 20.67	-1	120286..120885	-	199	26553548	-	MYPE950	-	hypothetical protein
97	 25.52	0	121160..122272	-	370	26553549	-	MYPE960	-	ABC transporter ATP-binding protein
98	 26.76	0	122274..124313	-	679	26553550	-	MYPE970	-	integral membrane protein
99	 26.74	0	124534..124806	+	90	26553551	-	MYPE980	-	chaperonin GroES
100	 29.98	+1	124836..126473	+	545	26553552	groEL	MYPE990	-	chaperonin GroEL
101	 27.64	0	126533..127024	-	163	26553553	-	MYPE1000	-	deoxyuridine 5'triphosphate nucleotidohydrolase dUTPase
102	 30.58	+1	127201..127599	+	132	26553554	-	MYPE1010	-	ribosomal protein S16
103	 24.96	0	127608..128288	+	226	26553555	-	MYPE1020	-	tRNA (guanine-N1)-methyltransferase
104	 29.22	0	128301..128738	+	145	26553556	rplS	MYPE1030	-	50S ribosomal protein L19
105	 37.43	+2	128879..129049	-	56	26553557	-	MYPE1035	-	hypothetical protein
106	 29.15	0	129290..130030	+	246	26553558	-	MYPE1040	-	purine nucleoside phosphorylase
107	 24.81	0	130032..131333	+	433	26553559	-	MYPE1050	-	thymidine phosphorylase
108	 26.48	0	131342..131764	+	140	26553560	-	MYPE1060	-	cytidine deaminase
109	 28.12	0	131768..133435	+	555	26553561	-	MYPE1070	-	phosphomannomutase
110	 27.49	0	133662..136535	+	957	26553562	-	MYPE1080	-	hypothetical protein
111	 27.65	0	136647..138440	+	597	26553563	nusA	MYPE1090	-	transcription elongation factor NusA
112	 18.68	-2	138433..138705	+	90	26553564	-	MYPE1100	-	hypothetical protein
113	 28.56	0	138728..140590	+	620	26553565	infB	MYPE1110	-	translation initiation factor IF-2
114	 23.65	0	140574..140924	+	116	26553566	rbfA	MYPE1120	-	ribosome-binding factor A
115	 26.81	0	140930..141619	+	229	26553567	-	MYPE1130	-	hypothetical protein
116	 26.94	0	141878..142315	+	145	26553568	rpsF	MYPE1140	-	30S ribosomal protein S6
117	 27.54	0	142348..142917	+	189	26553569	-	MYPE1150	-	single-strand DNA binding protein
118	 28.82	0	142944..143408	+	154	26553570	-	MYPE1160	-	ribosomal protein S18
119	 27.35	0	143508..144176	+	222	26553571	-	MYPE1170	-	deoxyribose-phosphate aldolase
120	 26.27	0	144185..144736	+	183	26553572	-	MYPE1180	-	hypothetical protein
121	 28.63	0	145140..146075	+	311	26553573	-	MYPE1190	-	endonuclease IV
122	 22.76	0	146063..146497	+	144	26553574	-	MYPE1200	-	ferric uptake regulation protein
123	 24.50	0	146703..148094	+	463	26553575	-	MYPE1210	-	transporter
124	 27.67	0	148181..149716	+	511	26553576	guaA	MYPE1220	-	bifunctional GMP synthase/glutamine amidotransferase protein
125	 22.13	-1	149987..151048	+	353	26553577	-	MYPE1230	-	adenine-specific DNA methyltransferase
126	 26.25	0	151186..152202	-	338	26553578	-	MYPE1240	-	IS1630-like transposase
127	 20.28	-1	152337..152765	-	142	26553579	-	MYPE1250	-	hypothetical protein
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.