IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
690	 26.27	0	884015..884863	-	282	26554142	-	MYPE6880	-	methylenetetrahydrofolate dehydrogenase
691	 26.92	0	885038..886675	-	545	26554143	-	MYPE6890	-	pyruvate decarboxylase
692	 27.73	0	886677..887837	-	386	26554144	-	MYPE6900	-	butanol dehydrogenas
693	 29.03	0	888037..890382	-	781	26554145	-	MYPE6910	-	ATP-dependent protease La
694	 25.64	0	890549..891886	-	445	26554146	-	MYPE6920	-	FKBP-type peptidyl-prolyl cis-transisomerase
695	 29.18	0	892031..893620	-	529	26554147	-	MYPE6930	-	amino acid permease
696	 22.37	-1	893795..895126	-	443	26554148	-	MYPE6940	-	integrated membrane protein
697	 27.91	0	895222..899115	-	1297	26554149	-	MYPE6950	-	hypothetical protein
698	 28.88	0	899148..902945	-	1265	26554150	-	MYPE6960	-	hypothetical protein
699	 28.12	0	902967..906821	-	1284	26554151	-	MYPE6970	-	hypothetical protein
700	 28.49	0	906983..910906	-	1307	26554152	-	MYPE6980	-	hypothetical protein
701	 29.25	0	910938..914219	-	1093	26554153	-	MYPE6990	-	hypothetical protein
702	 26.88	0	914220..914684	-	154	26554154	-	MYPE7000	-	hypothetical protein
703	 28.05	0	914706..918569	-	1287	26554155	-	MYPE7010	-	hypothetical protein
704	 28.84	0	918826..920919	-	697	26554156	-	MYPE7020	-	signal-peptide-less P35 lipoprotein
705	 28.73	0	921310..922656	-	448	26554157	-	MYPE7035	-	signal-peptide-less P35 lipoprotein
706	 26.67	0	922739..923353	-	204	26554158	-	MYPE7030	-	signal-peptide-less P35 lipoprotein
707	 28.62	0	923612..925753	-	713	26554159	-	MYPE7040	-	signal-peptide-less P35 lipoprotein
708	 28.38	0	925987..928065	-	692	26554160	-	MYPE7050	-	signal-peptide-less P35 lipoprotein
709	 29.16	0	928473..929957	-	494	26554161	-	MYPE7060	-	signal-peptide-less P35 lipoprotein
710	 27.89	0	930370..932427	-	685	26554162	-	MYPE7070	-	signal-peptide-less P35 lipoprotein
711	 26.43	0	932816..933148	-	110	26554163	-	MYPE7080	-	putative lipoprotein
712	 31.44	+1	933274..933642	-	122	26554164	-	MYPE7090	-	putative lipoprotein
713	 22.47	-1	934292..934558	-	88	26554165	-	MYPE7100	-	transposase for IS150-like insertion sequence element
714	 17.51	-2	935044..935220	-	58	26554166	-	MYPE7115	-	hypothetical protein
715	 29.36	0	935471..936325	-	284	26554167	-	MYPE7110	-	hypothetical protein
716	 26.11	0	936508..937920	+	470	26554168	-	MYPE7120	-	transposase for IS232-like insertion sequence element
717	 24.80	0	937922..938683	+	253	26554169	-	MYPE7130	-	insertion sequence IS232 putative ATP-binding protein
718	 29.10	0	939317..940048	-	243	26554170	-	MYPE7140	-	hypothetical protein
719	 22.85	0	940451..940927	-	158	26554171	-	MYPE7150	-	hypothetical protein
720	 28.69	0	940930..941661	-	243	26554172	araD	MYPE7160	-	L-ribulose-5-phosphate 4-epimerase
721	 26.26	0	941642..942532	-	296	161723282	-	MYPE7170	-	L-xylulose 5-phosphate 3-epimerase
722	 30.89	+1	942507..943160	-	217	26554174	ulaD	MYPE7180	-	3-keto-L-gulonate-6-phosphate decarboxylase
723	 24.66	0	943178..943546	-	122	26554175	-	MYPE7190	-	PTS system enzyme IIA component
724	 30.50	+1	943651..943932	-	93	26554176	-	MYPE7200	-	PTS system enzyme IIB component
725	 29.73	+1	943971..944192	-	73	26554177	-	MYPE7210	-	hypothetical protein
726	 32.88	+1	944315..945868	-	517	26554178	ulaA	MYPE7220	-	ascorbate-specific PTS system enzyme IIC
727	 26.55	0	945903..946079	-	58	26554179	-	MYPE7230	-	hypothetical protein
728	 33.62	+2	946265..946957	-	230	26554180	-	MYPE7240	-	phosphotriesterase family protein
729	 23.89	0	947297..949975	-	892	26554181	-	MYPE7250	-	hypothetical protein
730	 25.95	0	949978..953469	-	1163	26554182	-	MYPE7260	-	hypothetical protein
731	 23.57	0	953497..955299	-	600	26554183	-	MYPE7270	-	integral membrane protein
732	 23.82	0	955305..956261	-	318	26554184	-	MYPE7280	-	ABC transporter ATP-binding protein
733	 26.55	0	956939..957454	-	171	26554185	-	MYPE7290	-	hypothetical protein
734	 28.54	0	957596..960976	-	1126	26554186	-	MYPE7300	-	hypothetical protein
735	 27.09	0	961313..962641	+	442	26554187	-	MYPE7310	-	hypothetical protein
736	 29.30	0	962780..966100	-	1106	26554188	-	MYPE7320	-	hypothetical protein
737	 29.15	0	966342..967895	-	517	26554189	-	MYPE7330	-	P35 lipoprotein
738	 26.19	0	968615..968824	-	69	26554190	-	MYPE7340	-	hypothetical protein
739	 30.70	+1	968984..969325	-	113	26554191	-	MYPE7350	-	hypothetical protein
740	 28.35	0	969560..970021	-	153	26554192	-	MYPE7360	-	hypothetical protein
741	 28.69	0	970527..971624	-	365	26554193	-	MYPE7370	-	P35 lipoprotein
742	 29.23	0	971999..973144	-	381	26554194	-	MYPE7375	-	putative P35 lipoprotein
743	 33.33	+2	973092..973526	-	144	26554195	-	MYPE7380	-	putative P35 lipoprotein
744	 29.94	+1	973865..975013	-	382	26554196	-	MYPE7400	-	P35 lipoprotein
745	 28.68	0	975304..976701	-	465	26554197	-	MYPE7410	-	hypothetical protein
746	 24.83	0	976706..977152	-	148	26554198	-	MYPE7420	-	nitrogen fixation protein NifU
747	 26.16	0	977139..978365	-	408	26554199	-	MYPE7430	-	aminotransferase NifS
748	 23.03	0	978367..978987	-	206	26554200	-	MYPE7440	-	hypothetical protein
749	 27.44	0	979006..979752	-	248	26554201	-	MYPE7450	-	ABC transporter ATP-binding protein
750	 23.00	0	979900..980586	-	228	26554202	-	MYPE7460	-	acetyltransferase (GNAT) family protein
751	 21.10	-1	980991..983066	-	691	26554203	-	MYPE7470	-	ABC transporter ATP-binding protein
752	 25.29	0	983164..983673	-	169	26554204	-	MYPE7480	-	hypothetical protein
753	 25.53	0	984101..984664	-	187	26554205	-	MYPE7490	-	hypothetical protein
754	 25.41	0	985032..985574	-	180	26554206	-	MYPE7500	-	hypothetical protein
755	 25.05	0	986000..986542	-	180	26554207	-	MYPE7510	-	hypothetical protein
756	 26.14	0	986910..987368	-	152	26554208	-	MYPE7520	-	hypothetical protein
757	 27.20	0	987711..989504	-	597	26554209	-	MYPE7530	-	ABC transporter ATP-binding protein
758	 27.01	0	989507..991276	-	589	26554210	-	MYPE7540	-	ABC transporter ATP-binding protein
759	 30.54	+1	991633..992241	-	202	26554211	rpsD	MYPE7550	-	30S ribosomal protein S4
760	 18.82	-2	992543..993472	+	309	26554212	-	MYPE7560	-	hypothetical protein
761	 30.96	+1	993492..995807	-	771	26554213	-	MYPE7570	-	putative lipoprotein
762	 28.93	0	995770..996405	-	211	26554214	-	MYPE7580	-	putative lipoprotein
763	 30.25	+1	996518..999436	-	972	26554215	-	MYPE7590	-	putative lipoprotein
764	 29.99	+1	999563..1002460	-	965	26554216	-	MYPE7600	-	putative lipoprotein
765	 29.97	+1	1002603..1005635	-	1010	26554217	-	MYPE7610	-	putative lipoprotein
766	 30.04	+1	1005790..1008762	-	990	26554218	-	MYPE7620	-	putative lipoprotein
767	 20.68	-1	1008961..1009545	-	194	26554219	-	MYPE7630	-	hypothetical protein
768	 24.25	0	1009740..1010477	-	245	26554220	-	MYPE7640	-	hypothetical protein
769	 23.07	0	1010553..1011935	-	460	26554221	-	MYPE7650	-	hypothetical protein
770	 28.42	0	1012111..1015242	-	1043	26554222	-	MYPE7660	-	hypothetical protein
771	 28.22	0	1015884..1018013	-	709	26554223	-	MYPE7670	-	PTS system fructose-specific enzyme IIABC component
772	 19.70	-1	1018103..1018366	-	87	26554224	-	MYPE7680	-	hypothetical protein
773	 19.12	-2	1018351..1020285	-	644	26554225	-	MYPE7690	-	putative regulatory protein
774	 25.11	0	1020372..1021295	-	307	26554226	-	MYPE7700	-	mannose-6-phosphate isomerase
775	 28.22	0	1021478..1024606	-	1042	26554227	-	MYPE7710	-	hypothetical protein
776	 27.99	0	1024895..1028020	-	1041	26554228	-	MYPE7720	-	hypothetical protein
777	 28.78	0	1028231..1031242	-	1003	26554229	-	MYPE7730	-	hypothetical protein
778	 23.83	0	1031624..1032538	-	304	26554230	-	MYPE7750	-	1-phosphofructokinase
779	 29.59	+1	1032492..1034708	-	738	26554231	-	MYPE7760	-	PTS system fructose-specific IIABC component
780	 24.90	0	1034698..1035468	-	256	26554232	-	MYPE7770	-	transcriptional regulator DeoR family protein
781	 25.18	0	1035998..1037554	+	518	26554233	-	MYPE7780	-	IS1202 transposase
782	 29.96	+1	1037799..1041953	-	1384	26554234	-	MYPE7790	-	hypothetical protein
783	 29.73	+1	1042320..1046654	-	1444	26554235	-	MYPE7800	-	hypothetical protein
784	 29.55	0	1046891..1050640	-	1249	26554236	-	MYPE7810	-	hypothetical protein
785	 32.09	+1	1050844..1051245	-	133	26554237	-	MYPE7820	-	hypothetical protein
786	 23.92	0	1051528..1052781	+	417	26554238	-	MYPE7830	-	hypothetical protein
787	 25.24	0	1053118..1053747	-	209	26554239	-	MYPE7840	-	orotate phosphoribosyltransferase
788	 26.44	0	1053764..1054459	-	231	26554240	-	MYPE7850	-	orotidine-5-phosphate decarboxylase
789	 29.75	+1	1054461..1055381	-	306	26554241	-	MYPE7860	-	dihydroorotate dehydrogenase 1B
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.