IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
624	 26.14	0	798211..798891	+	226	26554076	-	MYPE6240	-	alpha-acetolactate decarboxylase
625	 27.84	0	799425..799679	+	84	26554077	-	MYPE6250	-	3-ketoacyl-acyl carrier protein reductase
626	 29.54	0	800167..801246	-	359	26554078	-	MYPE6260	-	formate/ nitrite transporter
627	 19.14	-2	801422..802168	+	248	26554079	-	MYPE6270	-	hypothetical protein
628	 16.37	-2	802271..802441	-	56	26554080	-	MYPE6275	-	hypothetical protein
629	 22.55	-1	802979..803803	+	274	26554081	-	MYPE6280	-	hypothetical protein
630	 25.97	0	804088..805500	+	470	26554082	-	MYPE6290	-	transposase for IS232-like insertion sequence element
631	 24.80	0	805502..806263	+	253	26554083	-	MYPE6300	-	IS232 putative ATP-binding protein IstB
632	 22.82	0	806513..807235	+	240	26554084	-	MYPE6310	-	hypothetical protein
633	 24.87	0	807241..809568	-	775	26554085	-	MYPE6320	-	hypothetical protein
634	 24.77	0	809552..811384	-	610	26554086	-	MYPE6330	-	hypothetical protein
635	 22.72	0	811418..813085	-	555	26554087	-	MYPE6340	-	putative glycosyl transferase
636	 30.58	+1	813209..814732	-	507	26554088	glpK	MYPE6360	-	glycerol kinase
637	 31.41	+1	814757..815902	-	381	26554089	-	MYPE6370	-	glycerol-3-phosphate dehydrogenase
638	 35.04	+2	815954..816772	-	272	26554090	-	MYPE6380	-	glycerol uptake facilitator protein
639	 27.98	0	817045..818034	-	329	26554091	recA	MYPE6390	-	recombinase A
640	 28.31	0	818098..818595	-	165	26554092	-	MYPE6400	-	putative competence-damage inducible protein CinA
641	 29.44	0	819003..819542	-	179	26554093	-	MYPE6410	-	hypothetical protein
642	 24.81	0	819915..820442	+	175	26554094	-	MYPE6420	-	NADPH oxidoreductase
643	 26.75	0	820624..821352	+	242	26554095	-	MYPE6430	-	NADPH flavin oxidoreductase
644	 21.18	-1	821354..822439	-	361	26554096	-	MYPE6440	-	ATP/GTP-binding protein
645	 22.83	0	822420..823019	-	199	26554097	-	MYPE6450	-	hypothetical protein
646	 22.93	0	823023..823964	-	313	26554098	-	MYPE6460	-	hypothetical protein
647	 28.74	0	823988..828433	-	1481	26554099	-	MYPE6470	-	DNA topoisomerase IV subunit A
648	 30.01	+1	828439..830334	-	631	26554100	-	MYPE6480	-	DNA topoisomerase IV subunit B
649	 28.78	0	831015..832199	-	394	26554101	-	MYPE6490	-	P35 lipoprotein
650	 34.76	+2	832494..832703	-	69	26554102	-	MYPE6495	-	putative P35 lipoprotein
651	 28.48	0	832669..833658	-	329	26554103	-	MYPE6500	-	putative P35 lipoprotein
652	 29.20	0	833955..835139	-	394	26554104	-	MYPE6510	-	P35 lipoprotein
653	 30.00	+1	835456..835935	-	159	26554105	-	MYPE6525	-	putative P35 lipoprotein
654	 29.26	0	836106..836645	-	179	26554106	-	MYPE6520	-	putative P35 lipoprotein
655	 33.07	+2	836957..838117	-	386	26554107	-	MYPE6530	-	P35 lipoprotein
656	 32.37	+1	838407..839543	-	378	26554108	-	MYPE6540	-	P35 lipoprotein
657	 32.39	+1	839924..840985	-	353	26554109	-	MYPE6550	-	P35 lipoprotein
658	 30.27	+1	841270..842445	-	391	26554110	-	MYPE6560	-	P35 lipoprotein
659	 31.56	+1	842735..843859	-	374	26554111	-	MYPE6570	-	P35 lipoprotein
660	 31.83	+1	844164..845363	-	399	26554112	-	MYPE6580	-	P35 lipoprotein
661	 28.42	0	845665..846762	-	365	26554113	-	MYPE6590	-	P35 lipoprotein
662	 21.63	-1	847002..848744	-	580	26554114	-	MYPE6600	-	transport system permease
663	 21.41	-1	848734..849471	-	245	26554115	-	MYPE6610	-	ABC transporter ATP-binding protein
664	 25.23	0	849464..850672	-	402	26554116	-	MYPE6620	-	high affinity transport system protein
665	 28.56	0	850970..852142	-	390	26554117	-	MYPE6630	-	P35 lipoprotein homolog reported as putative lipoprotein IMP13
666	 29.48	0	852586..853752	-	388	26554118	-	MYPE6640	-	P35 lipoprotein
667	 30.49	+1	854049..855209	-	386	26554119	-	MYPE6650	-	P35 lipoprotein
668	 29.74	+1	855889..857058	-	389	26554120	-	MYPE6660	-	P35 lipoprotein
669	 30.08	+1	857352..858488	-	378	26554121	-	MYPE6670	-	P35 lipoprotein
670	 29.95	+1	858786..859937	-	383	26554122	-	MYPE6680	-	P35 lipoprotein
671	 30.68	+1	860232..861398	-	388	26554123	-	MYPE6690	-	P35 lipoprotein
672	 19.86	-1	861753..862316	-	187	26554124	-	MYPE6700	-	hypothetical protein
673	 31.57	+1	862483..863619	-	378	26554125	-	MYPE6710	-	P35 lipoprotein
674	 31.79	+1	863908..865074	-	388	26554126	-	MYPE6720	-	P35 lipoprotein
675	 31.17	+1	865362..866516	-	384	26554127	-	MYPE6730	-	P35 lipoprotein
676	 31.54	+1	866864..867925	-	353	26554128	-	MYPE6740	-	P35 lipoprotein
677	 31.34	+1	868230..869384	-	384	26554129	-	MYPE6750	-	P35 lipoprotein
678	 26.32	0	869979..870434	-	151	26554130	-	MYPE6760	-	hypothetical protein
679	 24.79	0	870598..871077	-	159	26554131	-	MYPE6770	-	flavodoxin
680	 30.73	+1	871412..872563	-	383	26554132	-	MYPE6780	-	P35 lipoprotein homolog reported as gene for P38 lipoprotein
681	 29.39	0	872868..874187	-	439	26554133	-	MYPE6790	-	P35 lipoprotein
682	 31.21	+1	874612..875742	-	376	26554134	-	MYPE6800	-	P35 lipoprotein homolog reported as gene for P33 lipoprotein
683	 29.84	+1	876041..877129	-	362	26554135	-	MYPE6810	-	P35 lipoprotein
684	 29.96	+1	877416..878543	-	375	26554136	-	MYPE6820	-	P35 lipoprotein homolog reported as IMP14
685	 30.02	+1	878839..879924	-	361	26554137	-	MYPE6830	-	P35 lipoprotein
686	 29.66	+1	880225..881313	-	362	26554138	-	MYPE6840	-	P35 lipoprotein
687	 28.20	0	881676..882512	-	278	26554139	-	MYPE6850	-	putative lipoprotein
688	 21.51	-1	882695..883159	-	154	26554140	-	MYPE6860	-	dihyrofolate reductase
689	 24.94	0	883159..884028	-	289	26554141	thyA	MYPE6870	-	thymidylate synthase
690	 26.27	0	884015..884863	-	282	26554142	-	MYPE6880	-	methylenetetrahydrofolate dehydrogenase
691	 26.92	0	885038..886675	-	545	26554143	-	MYPE6890	-	pyruvate decarboxylase
692	 27.73	0	886677..887837	-	386	26554144	-	MYPE6900	-	butanol dehydrogenas
693	 29.03	0	888037..890382	-	781	26554145	-	MYPE6910	-	ATP-dependent protease La
694	 25.64	0	890549..891886	-	445	26554146	-	MYPE6920	-	FKBP-type peptidyl-prolyl cis-transisomerase
695	 29.18	0	892031..893620	-	529	26554147	-	MYPE6930	-	amino acid permease
696	 22.37	-1	893795..895126	-	443	26554148	-	MYPE6940	-	integrated membrane protein
697	 27.91	0	895222..899115	-	1297	26554149	-	MYPE6950	-	hypothetical protein
698	 28.88	0	899148..902945	-	1265	26554150	-	MYPE6960	-	hypothetical protein
699	 28.12	0	902967..906821	-	1284	26554151	-	MYPE6970	-	hypothetical protein
700	 28.49	0	906983..910906	-	1307	26554152	-	MYPE6980	-	hypothetical protein
701	 29.25	0	910938..914219	-	1093	26554153	-	MYPE6990	-	hypothetical protein
702	 26.88	0	914220..914684	-	154	26554154	-	MYPE7000	-	hypothetical protein
703	 28.05	0	914706..918569	-	1287	26554155	-	MYPE7010	-	hypothetical protein
704	 28.84	0	918826..920919	-	697	26554156	-	MYPE7020	-	signal-peptide-less P35 lipoprotein
705	 28.73	0	921310..922656	-	448	26554157	-	MYPE7035	-	signal-peptide-less P35 lipoprotein
706	 26.67	0	922739..923353	-	204	26554158	-	MYPE7030	-	signal-peptide-less P35 lipoprotein
707	 28.62	0	923612..925753	-	713	26554159	-	MYPE7040	-	signal-peptide-less P35 lipoprotein
708	 28.38	0	925987..928065	-	692	26554160	-	MYPE7050	-	signal-peptide-less P35 lipoprotein
709	 29.16	0	928473..929957	-	494	26554161	-	MYPE7060	-	signal-peptide-less P35 lipoprotein
710	 27.89	0	930370..932427	-	685	26554162	-	MYPE7070	-	signal-peptide-less P35 lipoprotein
711	 26.43	0	932816..933148	-	110	26554163	-	MYPE7080	-	putative lipoprotein
712	 31.44	+1	933274..933642	-	122	26554164	-	MYPE7090	-	putative lipoprotein
713	 22.47	-1	934292..934558	-	88	26554165	-	MYPE7100	-	transposase for IS150-like insertion sequence element
714	 17.51	-2	935044..935220	-	58	26554166	-	MYPE7115	-	hypothetical protein
715	 29.36	0	935471..936325	-	284	26554167	-	MYPE7110	-	hypothetical protein
716	 26.11	0	936508..937920	+	470	26554168	-	MYPE7120	-	transposase for IS232-like insertion sequence element
717	 24.80	0	937922..938683	+	253	26554169	-	MYPE7130	-	insertion sequence IS232 putative ATP-binding protein
718	 29.10	0	939317..940048	-	243	26554170	-	MYPE7140	-	hypothetical protein
719	 22.85	0	940451..940927	-	158	26554171	-	MYPE7150	-	hypothetical protein
720	 28.69	0	940930..941661	-	243	26554172	araD	MYPE7160	-	L-ribulose-5-phosphate 4-epimerase
721	 26.26	0	941642..942532	-	296	161723282	-	MYPE7170	-	L-xylulose 5-phosphate 3-epimerase
722	 30.89	+1	942507..943160	-	217	26554174	ulaD	MYPE7180	-	3-keto-L-gulonate-6-phosphate decarboxylase
723	 24.66	0	943178..943546	-	122	26554175	-	MYPE7190	-	PTS system enzyme IIA component
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.