IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
567	 29.97	+1	721079..721435	-	118	26554019	-	MYPE5670	-	hypothetical protein
568	 27.71	0	721637..722152	-	171	26554020	-	MYPE5680	-	hypothetical protein
569	 18.11	-2	722136..722378	-	80	26554021	-	MYPE5690	-	hypothetical protein
570	 27.12	0	722714..723904	-	396	26554022	-	MYPE5700	-	acetate kinase
571	 25.28	0	724015..725703	+	562	26554023	-	MYPE5710	-	IS1202-like transposase
572	 25.07	0	725889..727304	+	471	26554024	-	MYPE5720	-	IS1202-like transposase
573	 36.07	+2	727527..727892	-	121	26554025	-	MYPE5730	-	ribosomal protein L7/L12
574	 25.63	0	727920..728477	-	185	26554026	rplJ	MYPE5740	-	50S ribosomal protein L10
575	 24.25	0	728692..729429	-	245	26554027	-	MYPE5750	-	glycerophosphoryl diester phosphodiesterase
576	 29.29	0	729422..730906	-	494	26554028	-	MYPE5760	-	permease
577	 28.26	0	730911..731363	-	150	26554029	-	MYPE5770	-	hypothetical protein
578	 25.20	0	731733..732728	-	331	26554030	-	MYPE5780	-	hypothetical protein
579	 25.78	0	732760..733620	-	286	26554031	-	MYPE5790	-	hypothetical protein
580	 30.05	+1	733653..734657	-	334	26554032	-	MYPE5800	-	AAA family ATPase
581	 24.82	0	734799..735350	-	183	26554033	-	MYPE5810	-	hypoxanthine-guanine phosphoribosyltransferase
582	 24.56	0	735350..736648	-	432	26554034	-	MYPE5820	-	adenylosuccinate lyase
583	 26.29	0	736658..737977	-	439	26554035	-	MYPE5830	-	adenylosuccinate synthetase
584	 19.64	-1	738045..738212	-	55	26554036	-	MYPE5840	-	hypothetical protein
585	 27.16	0	738267..739238	-	323	26554037	-	MYPE5850	-	phosphoesterase
586	 25.26	0	739245..740396	-	383	26554038	-	MYPE5860	-	thiamin biosynthesis protein
587	 30.97	+1	740575..741504	-	309	26554039	-	MYPE5870	-	sugar ABC transporter permease
588	 29.24	0	741504..743138	-	544	26554040	-	MYPE5880	-	sugar ABC transporter permease
589	 27.54	0	743138..745036	-	632	26554041	-	MYPE5890	-	sugar ABC transporter ATP-binding protein
590	 33.22	+2	745002..746816	-	604	26554042	-	MYPE5900	-	putative lipoprotein
591	 28.96	0	747077..749386	-	769	26554043	-	MYPE5910	-	PTS system enzyme IIABC component
592	 27.04	0	750031..750999	-	322	26554044	pfkA	MYPE5920	-	6-phosphofructokinase
593	 22.78	0	751077..751673	-	198	26554045	-	MYPE5930	-	hypothetical protein
594	 23.68	0	751683..752252	-	189	26554046	-	MYPE5940	-	MerR family transcriptional regulator
595	 23.67	0	752638..754365	+	575	26554047	-	MYPE5950	-	hypothetical protein
596	 22.32	-1	754566..756707	+	713	26554048	-	MYPE5960	-	hypothetical protein
597	 22.61	-1	756800..757396	+	198	26554049	-	MYPE5970	-	hypothetical protein
598	 24.43	0	757404..758852	+	482	26554050	-	MYPE5980	-	hypothetical protein
599	 29.19	0	758954..761509	-	851	26554051	-	MYPE5990	-	lipase
600	 31.58	+1	761573..761800	-	75	26554052	-	MYPE6000	-	hypothetical protein
601	 26.50	0	761815..763527	-	570	26554053	-	MYPE6010	-	lipase
602	 26.10	0	763511..765403	-	630	26554054	-	MYPE6020	-	hypothetical protein
603	 29.57	0	765413..768070	-	885	26554055	-	MYPE6030	-	lipase
604	 33.33	+2	768384..768605	-	73	26554056	-	MYPE6040	-	hypothetical protein
605	 24.51	0	768615..770519	-	634	26554057	-	MYPE6050	-	integral membrane protein
606	 24.35	0	770657..773518	-	953	26554058	-	MYPE6060	-	integral membrane protein
607	 22.82	0	773667..776519	-	950	26554059	-	MYPE6070	-	hypothetical protein
608	 29.43	0	776690..778048	+	452	26554060	-	MYPE6080	-	arginine deiminase
609	 32.07	+1	778069..779097	+	342	26554061	-	MYPE6090	-	ornithine carbamoyltransferase
610	 32.69	+1	779123..780052	+	309	26554062	-	MYPE6100	-	carbamate kinase
611	 31.40	+1	780077..781780	+	567	26554063	-	MYPE6110	-	amino acid permeases
612	 26.90	0	781997..783691	+	564	26554064	argS	MYPE6120	-	arginyl-tRNA synthetase
613	 27.63	0	784352..789808	-	1818	26554065	-	MYPE6130	-	permease
614	 18.55	-2	790072..790389	-	105	26554066	-	MYPE6140	-	hypothetical protein
615	 21.72	-1	790534..790731	-	65	26554067	-	MYPE6155	-	hypothetical protein
616	 25.15	0	790872..791042	-	56	26554068	-	MYPE6160	-	hypothetical protein
617	 18.22	-2	791731..791955	-	74	26554069	-	MYPE6175	-	hypothetical protein
618	 23.99	0	792364..792909	+	181	26554070	-	MYPE6180	-	hypothetical protein
619	 28.82	0	793022..793309	+	95	26554071	-	MYPE6190	-	hypothetical protein
620	 27.99	0	793695..794237	+	180	26554072	-	MYPE6200	-	hypothetical protein
621	 27.99	0	794425..795603	-	392	26554073	-	MYPE6210	-	NADH-dependent butanol dehydrogenase
622	 14.20	-2	795885..796046	+	53	26554074	-	MYPE6220	-	hypothetical protein
623	 22.11	-1	796194..797627	+	477	26554075	-	MYPE6230	-	hypothetical protein
624	 26.14	0	798211..798891	+	226	26554076	-	MYPE6240	-	alpha-acetolactate decarboxylase
625	 27.84	0	799425..799679	+	84	26554077	-	MYPE6250	-	3-ketoacyl-acyl carrier protein reductase
626	 29.54	0	800167..801246	-	359	26554078	-	MYPE6260	-	formate/ nitrite transporter
627	 19.14	-2	801422..802168	+	248	26554079	-	MYPE6270	-	hypothetical protein
628	 16.37	-2	802271..802441	-	56	26554080	-	MYPE6275	-	hypothetical protein
629	 22.55	-1	802979..803803	+	274	26554081	-	MYPE6280	-	hypothetical protein
630	 25.97	0	804088..805500	+	470	26554082	-	MYPE6290	-	transposase for IS232-like insertion sequence element
631	 24.80	0	805502..806263	+	253	26554083	-	MYPE6300	-	IS232 putative ATP-binding protein IstB
632	 22.82	0	806513..807235	+	240	26554084	-	MYPE6310	-	hypothetical protein
633	 24.87	0	807241..809568	-	775	26554085	-	MYPE6320	-	hypothetical protein
634	 24.77	0	809552..811384	-	610	26554086	-	MYPE6330	-	hypothetical protein
635	 22.72	0	811418..813085	-	555	26554087	-	MYPE6340	-	putative glycosyl transferase
636	 30.58	+1	813209..814732	-	507	26554088	glpK	MYPE6360	-	glycerol kinase
637	 31.41	+1	814757..815902	-	381	26554089	-	MYPE6370	-	glycerol-3-phosphate dehydrogenase
638	 35.04	+2	815954..816772	-	272	26554090	-	MYPE6380	-	glycerol uptake facilitator protein
639	 27.98	0	817045..818034	-	329	26554091	recA	MYPE6390	-	recombinase A
640	 28.31	0	818098..818595	-	165	26554092	-	MYPE6400	-	putative competence-damage inducible protein CinA
641	 29.44	0	819003..819542	-	179	26554093	-	MYPE6410	-	hypothetical protein
642	 24.81	0	819915..820442	+	175	26554094	-	MYPE6420	-	NADPH oxidoreductase
643	 26.75	0	820624..821352	+	242	26554095	-	MYPE6430	-	NADPH flavin oxidoreductase
644	 21.18	-1	821354..822439	-	361	26554096	-	MYPE6440	-	ATP/GTP-binding protein
645	 22.83	0	822420..823019	-	199	26554097	-	MYPE6450	-	hypothetical protein
646	 22.93	0	823023..823964	-	313	26554098	-	MYPE6460	-	hypothetical protein
647	 28.74	0	823988..828433	-	1481	26554099	-	MYPE6470	-	DNA topoisomerase IV subunit A
648	 30.01	+1	828439..830334	-	631	26554100	-	MYPE6480	-	DNA topoisomerase IV subunit B
649	 28.78	0	831015..832199	-	394	26554101	-	MYPE6490	-	P35 lipoprotein
650	 34.76	+2	832494..832703	-	69	26554102	-	MYPE6495	-	putative P35 lipoprotein
651	 28.48	0	832669..833658	-	329	26554103	-	MYPE6500	-	putative P35 lipoprotein
652	 29.20	0	833955..835139	-	394	26554104	-	MYPE6510	-	P35 lipoprotein
653	 30.00	+1	835456..835935	-	159	26554105	-	MYPE6525	-	putative P35 lipoprotein
654	 29.26	0	836106..836645	-	179	26554106	-	MYPE6520	-	putative P35 lipoprotein
655	 33.07	+2	836957..838117	-	386	26554107	-	MYPE6530	-	P35 lipoprotein
656	 32.37	+1	838407..839543	-	378	26554108	-	MYPE6540	-	P35 lipoprotein
657	 32.39	+1	839924..840985	-	353	26554109	-	MYPE6550	-	P35 lipoprotein
658	 30.27	+1	841270..842445	-	391	26554110	-	MYPE6560	-	P35 lipoprotein
659	 31.56	+1	842735..843859	-	374	26554111	-	MYPE6570	-	P35 lipoprotein
660	 31.83	+1	844164..845363	-	399	26554112	-	MYPE6580	-	P35 lipoprotein
661	 28.42	0	845665..846762	-	365	26554113	-	MYPE6590	-	P35 lipoprotein
662	 21.63	-1	847002..848744	-	580	26554114	-	MYPE6600	-	transport system permease
663	 21.41	-1	848734..849471	-	245	26554115	-	MYPE6610	-	ABC transporter ATP-binding protein
664	 25.23	0	849464..850672	-	402	26554116	-	MYPE6620	-	high affinity transport system protein
665	 28.56	0	850970..852142	-	390	26554117	-	MYPE6630	-	P35 lipoprotein homolog reported as putative lipoprotein IMP13
666	 29.48	0	852586..853752	-	388	26554118	-	MYPE6640	-	P35 lipoprotein
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.