IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
475	 25.11	0	611374..611823	+	149	26553927	-	MYPE4760	-	hypothetical protein
476	 21.52	-1	612044..612280	+	78	26553928	-	MYPE4765	-	hypothetical protein
477	 23.97	0	612492..612950	+	152	26553929	-	MYPE4770	-	hypothetical protein
478	 25.90	0	613010..614233	+	407	26553930	-	MYPE4780	-	ATP/GTP-binding protein
479	 23.94	0	614238..615110	+	290	26553931	-	MYPE4790	-	ATP/GTP-binding protein
480	 22.22	-1	615123..616535	+	470	26553932	-	MYPE4800	-	ATP/GTP-binding protein
481	 26.67	0	616665..617534	-	289	26553933	-	MYPE4810	-	oxidoreductase
482	 21.95	-1	617656..618138	-	160	26553934	-	MYPE4820	-	hypothetical protein
483	 26.73	0	618467..621421	+	984	26553935	-	MYPE4830	-	structural maintenance of chromosomes SMC superfamily proteins
484	 27.14	0	621447..622511	+	354	26553936	-	MYPE4840	-	signal recognition particle GTPase FtsY
485	 20.06	-1	622513..622836	+	107	26553937	-	MYPE4850	-	hypothetical protein
486	 18.83	-2	622821..623399	+	192	26553938	-	MYPE4860	-	hypothetical protein
487	 22.43	-1	623606..624421	+	271	26553939	-	MYPE4870	-	hypothetical protein
488	 26.35	0	624803..625819	-	338	26553940	-	MYPE4880	-	IS1630-like transposase
489	 25.62	0	625954..626835	-	293	26553941	-	MYPE4890	-	hypothetical protein
490	 23.08	0	626965..627510	+	181	26553942	-	MYPE4900	-	hypothetical protein
491	 19.71	-1	627628..628464	+	278	26553943	-	MYPE4910	-	hypothetical protein
492	 29.44	0	628588..628818	+	76	26553944	-	MYPE4920	-	hypothetical protein
493	 23.67	0	628888..630201	-	437	26553945	-	MYPE4930	-	hypothetical protein
494	 24.33	0	630182..631369	-	395	26553946	-	MYPE4940	-	cytosine-specific DNA methyltransferase
495	 23.78	0	631567..632466	+	299	26553947	-	MYPE4950	-	haloacid dehalogenase-like hydrolase
496	 28.20	0	632713..634854	+	713	26553948	-	MYPE4960	-	anaerobic ribonucleoside-triphosphate reductase
497	 30.20	+1	634856..635365	+	169	26553949	-	MYPE4970	-	anaerobic ribonucleoside-triphosphate reductase activating protein NrdG
498	 24.85	0	635414..637357	+	647	26553950	-	MYPE4980	-	hypothetical protein
499	 30.52	+1	637864..638289	+	141	26553951	-	MYPE4990	-	hypothetical protein
500	 31.03	+1	638325..638585	+	86	26553952	-	MYPE5000	-	hypothetical protein
501	 22.16	-1	638675..639730	-	351	26553953	-	MYPE5010	-	coproporphyrinogen III oxidase
502	 22.78	0	639717..640616	-	299	26553954	-	MYPE5020	-	tRNA-isopentenyl pyrophosphate transferase
503	 28.72	0	640803..641777	-	324	26553955	eutD	MYPE5030	-	phosphotransacetylase
504	 23.04	0	641788..642438	-	216	26553956	-	MYPE5040	-	hypothetical protein
505	 22.60	-1	642888..644369	+	493	26553957	-	MYPE5050	-	BglG family transcription antiterminator
506	 29.38	0	644594..645859	+	421	26553958	-	MYPE5060	-	hypothetical protein
507	 26.29	0	645931..646725	-	264	26553959	-	MYPE5070	-	hypothetical protein
508	 32.22	+1	646995..648074	+	359	26553960	-	MYPE5080	-	pyruvate dehydrogenase E1 component subunit alpha
509	 34.13	+2	648074..649075	+	333	26553961	-	MYPE5090	-	pyruvate dehydrogenase E1 component subunit beta
510	 31.38	+1	649128..650564	+	478	26553962	-	MYPE5100	-	branched-chain alpha-keto acid dehydrogenase subunit E2
511	 29.74	+1	650595..651986	+	463	26553963	-	MYPE5110	-	dihydrolipoamide dehydrogenase of pyruvate dehydrogenase E3 component
512	 23.43	0	652172..652666	+	164	26553964	-	MYPE5120	-	gluthatione peroxidase
513	 28.68	0	653078..654109	-	343	26553965	-	MYPE5130	-	putative oxidoreductase
514	 21.88	-1	654228..654803	-	191	26553966	-	MYPE5140	-	AcrR family transcriptional regulator
515	 26.25	0	654895..655995	+	366	26553967	-	MYPE5150	-	hypothetical protein
516	 25.70	0	656178..657749	+	523	26553968	-	MYPE5160	-	hypothetical protein
517	 27.39	0	657867..659516	+	549	26553969	-	MYPE5170	-	amino acid permease
518	 20.68	-1	659570..660043	-	157	26553970	-	MYPE5180	-	hypothetical protein
519	 25.27	0	660052..660870	-	272	26553971	-	MYPE5190	-	putative haloacid dehalogenase-like hydrolase
520	 24.00	0	661025..662074	+	349	26553972	nadD	MYPE5200	-	putative nicotinate-nucleotide adenylyltransferase
521	 21.98	-1	662086..662772	+	228	26553973	-	MYPE5210	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
522	 23.12	0	662834..664165	-	443	26553974	-	MYPE5220	-	hypothetical protein
523	 29.20	0	664643..665731	+	362	26553975	-	MYPE5230	-	NADP-dependent alcohol dehydrogenase
524	 26.20	0	665788..666390	-	200	26553976	-	MYPE5240	-	xanthosine triphosphate pyrophosphatase
525	 22.13	-1	666500..666865	-	121	26553977	-	MYPE5250	-	hypothetical protein
526	 22.78	0	666988..668361	-	457	26553978	-	MYPE5260	-	hypothetical protein
527	 21.78	-1	668557..669318	-	253	26553979	-	MYPE5270	-	hypothetical protein
528	 24.98	0	669428..671569	-	713	26553980	-	MYPE5280	-	ppGpp 3'-pyrophosphohydrolase
529	 26.83	0	671800..673689	+	629	26553981	-	MYPE5290	-	hypothetical protein
530	 29.08	0	673823..674575	+	250	26553982	-	MYPE5300	-	hypothetical protein
531	 20.71	-1	674658..675275	-	205	26553983	-	MYPE5310	-	hypothetical protein
532	 23.86	0	675536..676063	+	175	26553984	-	MYPE5330	-	hypothetical protein
533	 19.09	-2	676182..676820	-	212	26553985	-	MYPE5340	-	hypothetical protein
534	 26.16	0	677235..678251	+	338	26553986	-	MYPE5350	-	IS1630-like transposase
535	 22.15	-1	678565..679449	-	294	26553987	-	MYPE5360	-	hypothetical protein
536	 33.99	+2	679713..680015	-	100	26553988	-	MYPE5370	-	hypothetical protein
537	 28.57	0	680107..680400	+	97	26553989	-	MYPE5380	-	hypothetical protein
538	 27.71	0	680663..681373	+	236	26553990	-	MYPE5390	-	hypothetical protein
539	 26.16	0	681538..682554	-	338	26553991	-	MYPE5400	-	IS1630-like transposase
540	 25.43	0	683254..684810	-	518	26553992	-	MYPE5410	-	IS1202-like transposase
541	 27.89	0	685162..685602	+	146	26553993	-	MYPE5420	-	hypothetical protein
542	 27.23	0	685866..686537	+	223	26553994	-	MYPE5430	-	hypothetical protein
543	 26.60	0	686657..688066	-	469	26553995	-	MYPE5440	-	hypothetical protein
544	 19.70	-1	688322..688519	-	65	26553996	-	MYPE5445	-	hypothetical protein
545	 28.56	0	688883..690622	-	579	26553997	-	MYPE5450	-	PTS system enzyme I
546	 24.23	0	690654..691598	-	314	26553998	-	MYPE5460	-	lipase-esterase related protein
547	 28.14	0	691782..695999	-	1405	26553999	-	MYPE5470	-	translocase
548	 26.91	0	696629..697702	+	357	26554000	-	MYPE5490	-	transposase for IS232-like insertion sequence element
549	 24.41	0	697704..698465	+	253	26554001	-	MYPE5500	-	IS232 putative ATP-binding protein IstB
550	 26.92	0	698899..699132	+	77	26554002	-	MYPE5505	-	hypothetical protein
551	 24.57	0	699666..700190	-	174	26554003	-	MYPE5510	-	hypothetical protein
552	 24.21	0	700280..702856	-	858	26554004	-	MYPE5520	-	oligopeptide transport ATP-binding protein OppF
553	 29.07	0	702868..704088	-	406	26554005	-	MYPE5530	-	oligopeptide transport ATP-binding protein OppD
554	 30.25	+1	704091..705323	-	410	26554006	-	MYPE5540	-	oligopeptide transport system permease protein OppC
555	 26.78	0	705316..706596	-	426	26554007	-	MYPE5550	-	oligopeptide transport system permease protein OppB
556	 31.76	+1	706606..709149	-	847	26554008	-	MYPE5560	-	hypothetical protein
557	 23.08	0	709425..710750	-	441	26554009	-	MYPE5570	-	glutamine transport ATP-binding protein
558	 25.58	0	710797..713286	-	829	26554010	-	MYPE5580	-	hypothetical protein
559	 28.10	0	713279..714826	-	515	26554011	-	MYPE5590	-	hypothetical protein
560	 22.90	0	714798..715439	-	213	26554012	-	MYPE5600	-	methylase
561	 25.26	0	716095..716577	+	160	26554013	-	MYPE5610	-	methionine sulfoxide reductase A
562	 24.31	0	716685..717482	-	265	26554014	-	MYPE5620	-	protein phosphatase
563	 24.65	0	717469..718527	-	352	26554015	-	MYPE5630	-	hypothetical protein
564	 25.55	0	718527..719117	-	196	26554016	-	MYPE5640	-	guanylate kinase
565	 29.77	+1	719197..719757	+	186	26554017	def	MYPE5650	-	peptide deformylase
566	 26.16	0	719924..720940	+	338	26554018	-	MYPE5660	-	IS1630-like transposase
567	 29.97	+1	721079..721435	-	118	26554019	-	MYPE5670	-	hypothetical protein
568	 27.71	0	721637..722152	-	171	26554020	-	MYPE5680	-	hypothetical protein
569	 18.11	-2	722136..722378	-	80	26554021	-	MYPE5690	-	hypothetical protein
570	 27.12	0	722714..723904	-	396	26554022	-	MYPE5700	-	acetate kinase
571	 25.28	0	724015..725703	+	562	26554023	-	MYPE5710	-	IS1202-like transposase
572	 25.07	0	725889..727304	+	471	26554024	-	MYPE5720	-	IS1202-like transposase
573	 36.07	+2	727527..727892	-	121	26554025	-	MYPE5730	-	ribosomal protein L7/L12
574	 25.63	0	727920..728477	-	185	26554026	rplJ	MYPE5740	-	50S ribosomal protein L10
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.