IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
441	 27.63	0	578452..579363	+	303	26553893	-	MYPE4410	-	putative integral membrane protein
442	 27.72	0	579621..579923	+	100	26553894	rplU	MYPE4420	-	50S ribosomal protein L21
443	 24.60	0	579928..580236	+	102	26553895	-	MYPE4430	-	hypothetical protein
444	 27.43	0	580240..580527	+	95	26553896	rpmA	MYPE4440	-	50S ribosomal protein L27
445	 27.04	0	580606..581082	+	158	26553897	-	MYPE4450	-	hypothetical protein
446	 23.32	0	581220..581858	+	212	26553898	-	MYPE4460	-	d-ribulose-5-phosphate 3 epimerase
447	 19.39	-1	581933..583861	+	642	26553899	-	MYPE4470	-	BglG family transcriptional antiterminator
448	 27.82	0	583867..584301	+	144	26553900	-	MYPE4480	-	PTS system enzyme IIA component
449	 28.87	0	584304..584594	+	96	26553901	-	MYPE4490	-	hypothetical protein
450	 31.15	+1	584630..586141	+	503	26553902	ulaA	MYPE4500	-	ascorbate-specific PTS system enzyme IIC
451	 25.72	0	586141..588111	+	656	26553903	-	MYPE4510	-	transketolase
452	 21.08	-1	588098..588448	+	116	26553904	-	MYPE4520	-	HAD family phosphatase
453	 22.64	0	588429..588746	+	105	26553905	-	MYPE4530	-	hypothetical protein
454	 28.93	0	588932..591994	+	1020	26553906	-	MYPE4540	-	PTS system enzyme IIBC components
455	 30.26	+1	592078..593508	+	476	26553907	-	MYPE4550	-	beta glucosidase
456	 28.87	0	593532..594965	+	477	26553908	-	MYPE4560	-	beta glucosidase
457	 25.23	0	595023..595898	-	291	26553909	-	MYPE4570	-	hypothetical protein
458	 26.09	0	595901..596908	-	335	26553910	-	MYPE4580	-	tryptophanyl-tRNA synthetase
459	 23.41	0	597066..597569	+	167	26553911	-	MYPE4590	-	hypothetical protein
460	 23.53	0	597589..598353	+	254	26553912	-	MYPE4600	-	hypothetical protein
461	 25.66	0	598353..598730	+	125	26553913	-	MYPE4610	-	hypothetical protein
462	 33.70	+2	598846..599940	-	364	26553914	-	MYPE4620	-	alcohol dehydrogenase
463	 23.48	0	600204..601106	+	300	26553915	-	MYPE4630	-	hypothetical protein
464	 19.38	-1	601297..601554	+	85	26553916	-	MYPE4640	-	hypothetical protein
465	 21.32	-1	601547..602470	+	307	26553917	-	MYPE4650	-	hypothetical protein
466	 19.63	-1	602580..603440	+	286	26553918	-	MYPE4660	-	hypothetical protein
467	 20.56	-1	603698..604621	+	307	26553919	-	MYPE4680	-	hypothetical protein
468	 27.67	0	604747..606036	+	429	26553920	-	MYPE4690	-	glucose-6-phosphate isomerase
469	 28.64	0	606148..607233	+	361	26553921	-	MYPE4700	-	hypothetical protein
470	 29.30	0	607304..608740	+	478	26553922	-	MYPE4710	-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
471	 26.56	0	608888..609787	-	299	26553923	-	MYPE4720	-	aldo/keto reductase family oxidoreductase
472	 19.51	-1	610069..610314	+	81	26553924	-	MYPE4730	-	hypothetical protein
473	 28.04	0	610298..610750	+	150	26553925	-	MYPE4740	-	hypothetical protein
474	 24.84	0	610827..611297	+	156	26553926	-	MYPE4750	-	hypothetical protein
475	 25.11	0	611374..611823	+	149	26553927	-	MYPE4760	-	hypothetical protein
476	 21.52	-1	612044..612280	+	78	26553928	-	MYPE4765	-	hypothetical protein
477	 23.97	0	612492..612950	+	152	26553929	-	MYPE4770	-	hypothetical protein
478	 25.90	0	613010..614233	+	407	26553930	-	MYPE4780	-	ATP/GTP-binding protein
479	 23.94	0	614238..615110	+	290	26553931	-	MYPE4790	-	ATP/GTP-binding protein
480	 22.22	-1	615123..616535	+	470	26553932	-	MYPE4800	-	ATP/GTP-binding protein
481	 26.67	0	616665..617534	-	289	26553933	-	MYPE4810	-	oxidoreductase
482	 21.95	-1	617656..618138	-	160	26553934	-	MYPE4820	-	hypothetical protein
483	 26.73	0	618467..621421	+	984	26553935	-	MYPE4830	-	structural maintenance of chromosomes SMC superfamily proteins
484	 27.14	0	621447..622511	+	354	26553936	-	MYPE4840	-	signal recognition particle GTPase FtsY
485	 20.06	-1	622513..622836	+	107	26553937	-	MYPE4850	-	hypothetical protein
486	 18.83	-2	622821..623399	+	192	26553938	-	MYPE4860	-	hypothetical protein
487	 22.43	-1	623606..624421	+	271	26553939	-	MYPE4870	-	hypothetical protein
488	 26.35	0	624803..625819	-	338	26553940	-	MYPE4880	-	IS1630-like transposase
489	 25.62	0	625954..626835	-	293	26553941	-	MYPE4890	-	hypothetical protein
490	 23.08	0	626965..627510	+	181	26553942	-	MYPE4900	-	hypothetical protein
491	 19.71	-1	627628..628464	+	278	26553943	-	MYPE4910	-	hypothetical protein
492	 29.44	0	628588..628818	+	76	26553944	-	MYPE4920	-	hypothetical protein
493	 23.67	0	628888..630201	-	437	26553945	-	MYPE4930	-	hypothetical protein
494	 24.33	0	630182..631369	-	395	26553946	-	MYPE4940	-	cytosine-specific DNA methyltransferase
495	 23.78	0	631567..632466	+	299	26553947	-	MYPE4950	-	haloacid dehalogenase-like hydrolase
496	 28.20	0	632713..634854	+	713	26553948	-	MYPE4960	-	anaerobic ribonucleoside-triphosphate reductase
497	 30.20	+1	634856..635365	+	169	26553949	-	MYPE4970	-	anaerobic ribonucleoside-triphosphate reductase activating protein NrdG
498	 24.85	0	635414..637357	+	647	26553950	-	MYPE4980	-	hypothetical protein
499	 30.52	+1	637864..638289	+	141	26553951	-	MYPE4990	-	hypothetical protein
500	 31.03	+1	638325..638585	+	86	26553952	-	MYPE5000	-	hypothetical protein
501	 22.16	-1	638675..639730	-	351	26553953	-	MYPE5010	-	coproporphyrinogen III oxidase
502	 22.78	0	639717..640616	-	299	26553954	-	MYPE5020	-	tRNA-isopentenyl pyrophosphate transferase
503	 28.72	0	640803..641777	-	324	26553955	eutD	MYPE5030	-	phosphotransacetylase
504	 23.04	0	641788..642438	-	216	26553956	-	MYPE5040	-	hypothetical protein
505	 22.60	-1	642888..644369	+	493	26553957	-	MYPE5050	-	BglG family transcription antiterminator
506	 29.38	0	644594..645859	+	421	26553958	-	MYPE5060	-	hypothetical protein
507	 26.29	0	645931..646725	-	264	26553959	-	MYPE5070	-	hypothetical protein
508	 32.22	+1	646995..648074	+	359	26553960	-	MYPE5080	-	pyruvate dehydrogenase E1 component subunit alpha
509	 34.13	+2	648074..649075	+	333	26553961	-	MYPE5090	-	pyruvate dehydrogenase E1 component subunit beta
510	 31.38	+1	649128..650564	+	478	26553962	-	MYPE5100	-	branched-chain alpha-keto acid dehydrogenase subunit E2
511	 29.74	+1	650595..651986	+	463	26553963	-	MYPE5110	-	dihydrolipoamide dehydrogenase of pyruvate dehydrogenase E3 component
512	 23.43	0	652172..652666	+	164	26553964	-	MYPE5120	-	gluthatione peroxidase
513	 28.68	0	653078..654109	-	343	26553965	-	MYPE5130	-	putative oxidoreductase
514	 21.88	-1	654228..654803	-	191	26553966	-	MYPE5140	-	AcrR family transcriptional regulator
515	 26.25	0	654895..655995	+	366	26553967	-	MYPE5150	-	hypothetical protein
516	 25.70	0	656178..657749	+	523	26553968	-	MYPE5160	-	hypothetical protein
517	 27.39	0	657867..659516	+	549	26553969	-	MYPE5170	-	amino acid permease
518	 20.68	-1	659570..660043	-	157	26553970	-	MYPE5180	-	hypothetical protein
519	 25.27	0	660052..660870	-	272	26553971	-	MYPE5190	-	putative haloacid dehalogenase-like hydrolase
520	 24.00	0	661025..662074	+	349	26553972	nadD	MYPE5200	-	putative nicotinate-nucleotide adenylyltransferase
521	 21.98	-1	662086..662772	+	228	26553973	-	MYPE5210	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
522	 23.12	0	662834..664165	-	443	26553974	-	MYPE5220	-	hypothetical protein
523	 29.20	0	664643..665731	+	362	26553975	-	MYPE5230	-	NADP-dependent alcohol dehydrogenase
524	 26.20	0	665788..666390	-	200	26553976	-	MYPE5240	-	xanthosine triphosphate pyrophosphatase
525	 22.13	-1	666500..666865	-	121	26553977	-	MYPE5250	-	hypothetical protein
526	 22.78	0	666988..668361	-	457	26553978	-	MYPE5260	-	hypothetical protein
527	 21.78	-1	668557..669318	-	253	26553979	-	MYPE5270	-	hypothetical protein
528	 24.98	0	669428..671569	-	713	26553980	-	MYPE5280	-	ppGpp 3'-pyrophosphohydrolase
529	 26.83	0	671800..673689	+	629	26553981	-	MYPE5290	-	hypothetical protein
530	 29.08	0	673823..674575	+	250	26553982	-	MYPE5300	-	hypothetical protein
531	 20.71	-1	674658..675275	-	205	26553983	-	MYPE5310	-	hypothetical protein
532	 23.86	0	675536..676063	+	175	26553984	-	MYPE5330	-	hypothetical protein
533	 19.09	-2	676182..676820	-	212	26553985	-	MYPE5340	-	hypothetical protein
534	 26.16	0	677235..678251	+	338	26553986	-	MYPE5350	-	IS1630-like transposase
535	 22.15	-1	678565..679449	-	294	26553987	-	MYPE5360	-	hypothetical protein
536	 33.99	+2	679713..680015	-	100	26553988	-	MYPE5370	-	hypothetical protein
537	 28.57	0	680107..680400	+	97	26553989	-	MYPE5380	-	hypothetical protein
538	 27.71	0	680663..681373	+	236	26553990	-	MYPE5390	-	hypothetical protein
539	 26.16	0	681538..682554	-	338	26553991	-	MYPE5400	-	IS1630-like transposase
540	 25.43	0	683254..684810	-	518	26553992	-	MYPE5410	-	IS1202-like transposase
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.