IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
353	 25.49	0	455243..455548	+	101	26553805	-	MYPE3520	-	hypothetical protein
354	 22.00	-1	455952..456392	+	146	26553806	smpB	MYPE3530	-	SsrA-binding protein
355	 27.04	0	456451..457626	+	391	26553807	-	MYPE3540	-	hippurate hydrolase
356	 24.16	0	457642..459048	+	468	26553808	-	MYPE3550	-	hypothetical protein
357	 25.89	0	459060..460013	+	317	26553809	-	MYPE3560	-	ABC transporter ATP-binding protein
358	 24.61	0	460360..461895	+	511	26553810	-	MYPE3570	-	ABC transporter ATP-binding protein
359	 28.37	0	462043..464679	+	878	26553811	-	MYPE3580	-	integral membrane protein
360	 28.15	0	464867..467509	+	880	26553812	-	MYPE3590	-	hypothetical protein
361	 28.83	0	467710..470352	+	880	26553813	-	MYPE3600	-	hypothetical protein
362	 28.31	0	470542..473187	+	881	26553814	-	MYPE3610	-	hypothetical protein
363	 27.32	0	473282..474910	+	542	26553815	-	MYPE3620	-	hypothetical protein
364	 26.24	0	475094..476080	+	328	26553816	-	MYPE3630	-	ABC transporter ATP-binding protein
365	 26.91	0	476233..477228	+	331	26553817	-	MYPE3640	-	putative glycerol-3-phosphate acyltransferase PlsX
366	 25.85	0	477203..477937	+	244	26553818	rnc	MYPE3650	-	ribonuclease III
367	 22.45	-1	477996..478436	-	146	26553819	-	MYPE3660	-	hypothetical protein
368	 29.01	0	478578..479063	+	161	26553820	greA	MYPE3670	-	transcription elongation factor GreA
369	 27.09	0	479674..480987	+	437	26553821	-	MYPE3700	-	hypothetical protein
370	 24.63	0	481048..481518	+	156	26553822	-	MYPE3710	-	NADH dehydrogenase
371	 25.83	0	481623..481862	+	79	26553823	-	MYPE3720	-	hypothetical protein
372	 27.62	0	482025..482777	+	250	26553824	-	MYPE3730	-	triose phosphate isomerase
373	 28.60	0	482767..484287	+	506	26553825	-	MYPE3740	-	phosphoglyceromutase
374	 32.15	+1	484414..485766	+	450	26553826	eno	MYPE3750	-	phosphopyruvate hydratase
375	 22.91	0	485853..486437	-	194	26553827	-	MYPE3760	-	hypothetical protein
376	 23.63	0	486573..487211	+	212	26553828	-	MYPE3770	-	hypothetical protein
377	 20.92	-1	487325..488299	+	324	26553829	-	MYPE3780	-	hypothetical protein
378	 27.29	0	488365..490482	-	705	26553830	-	MYPE3790	-	ATP-dependent protease binding subunit
379	 33.61	+2	490735..491457	+	240	26553831	-	MYPE3800	-	hypothetical protein
380	 30.19	+1	491758..492075	+	105	26553832	-	MYPE3810	-	hypothetical protein
381	 27.22	0	492101..493996	+	631	26553833	-	MYPE3820	-	hypothetical protein
382	 31.72	+1	494341..494712	+	123	26553834	-	MYPE3830	-	hypothetical protein
383	 27.51	0	494732..499027	+	1431	26553835	-	MYPE3840	-	hypothetical protein
384	 26.02	0	499041..502676	+	1211	26553836	-	MYPE3850	-	hypothetical protein
385	 27.82	0	502690..506826	+	1378	26553837	-	MYPE3860	-	hypothetical protein
386	 26.71	0	507117..508385	+	422	26553838	-	MYPE3870	-	dihydroorotase
387	 26.74	0	508626..508898	+	90	161723284	rpsO	MYPE3880	-	30S ribosomal protein S15
388	 27.00	0	508932..511331	+	799	26553840	leuS	MYPE3890	-	leucyl-tRNA synthetase
389	 25.93	0	511376..511537	+	53	161723283	rpmG	MYPE3900	-	50S ribosomal protein L33
390	 27.92	0	511583..512635	+	350	26553842	-	MYPE3910	-	aminopeptidase P
391	 24.96	0	512783..514168	+	461	26553843	-	MYPE3920	-	aldehyde dehydrogenase
392	 24.63	0	514177..514980	+	267	26553844	-	MYPE3930	-	esterase/lipase 1
393	 23.29	0	515030..515278	+	82	26553845	-	MYPE3940	-	hypothetical protein
394	 28.42	0	515414..516268	+	284	26553846	-	MYPE3950	-	hypothetical protein
395	 27.49	0	516292..518019	+	575	26553847	-	MYPE3960	-	putative two-component regulator
396	 26.24	0	518080..519546	+	488	26553848	-	MYPE3970	-	hypothetical protein
397	 27.65	0	519652..520161	+	169	26553849	-	MYPE3980	-	thiol peroxidase
398	 33.33	+2	520294..520491	-	65	26553850	-	MYPE3985	-	hypothetical protein
399	 23.36	0	520708..523365	+	885	26553851	-	MYPE3990	-	hypothetical protein
400	 28.57	0	523557..526139	+	860	26553852	-	MYPE4000	-	hypothetical protein
401	 21.15	-1	526614..527483	-	289	26553853	-	MYPE4010	-	hypothetical protein
402	 26.37	0	527560..528378	-	272	26553854	-	MYPE4020	-	putative integral membrane protein
403	 30.12	+1	528514..528762	-	82	26553855	-	MYPE4030	-	ribosomal protein L28
404	 28.27	0	528972..530333	+	453	26553856	asnC	MYPE4040	-	asparaginyl-tRNA synthetase
405	 22.32	-1	530361..531014	+	217	26553857	-	MYPE4050	-	phosphatidylglycerophosphate synthase
406	 25.92	0	531024..532304	+	426	26553858	-	MYPE4060	-	seryl-tRNA synthetase
407	 23.66	0	533074..536010	+	978	26553859	-	MYPE4070	-	hypothetical protein
408	 24.15	0	536291..538108	+	605	26553860	-	MYPE4080	-	hypothetical protein
409	 28.71	0	538342..540138	+	598	26553861	-	MYPE4090	-	ABC transporter ATP-binding protein
410	 28.11	0	540141..542132	+	663	26553862	-	MYPE4100	-	ABC transporter ATP-binding protein
411	 23.11	0	542141..543529	+	462	26553863	-	MYPE4110	-	aldehyde dehydrogenase
412	 20.79	-1	543652..543930	+	92	26553864	-	MYPE4120	-	hypothetical protein
413	 27.41	0	543945..545666	+	573	26553865	-	MYPE4130	-	dihydroacetone kinase
414	 29.43	0	545803..547926	+	707	26553866	-	MYPE4140	-	DNA topoisomerase I
415	 24.21	0	547974..548729	-	251	26553867	-	MYPE4150	-	hypothetical protein
416	 24.69	0	548811..549053	-	80	26553868	-	MYPE4160	-	acyl carrier protein
417	 22.81	0	549175..549516	-	113	26553869	-	MYPE4170	-	excinuclease
418	 25.97	0	549650..551062	+	470	26553870	-	MYPE4180	-	transposase for IS232-like insertion sequence element
419	 24.80	0	551064..551825	+	253	26553871	-	MYPE4190	-	insertion sequence IS232 putative ATP-binding protein
420	 23.73	0	551771..552676	-	301	26553872	-	MYPE4200	-	hypothetical protein
421	 21.64	-1	553029..554003	+	324	26553873	-	MYPE4210	-	hypothetical protein
422	 24.50	0	554182..555438	+	418	26553874	-	MYPE4220	-	hypothetical protein
423	 23.12	0	555574..556953	-	459	26553875	-	MYPE4230	-	hypothetical protein
424	 21.79	-1	557199..557510	+	103	26553876	-	MYPE4240	-	hypothetical protein
425	 22.84	0	557591..559162	+	523	26553877	-	MYPE4250	-	hypothetical protein
426	 22.98	0	559204..560130	+	308	26553878	-	MYPE4260	-	6-phosphogluconate dehydrogenase
427	 25.77	0	560260..561105	+	281	26553879	-	MYPE4270	-	hypothetical protein
428	 22.57	-1	561122..561688	+	188	26553880	-	MYPE4280	-	proline dipeptidase
429	 22.97	0	561795..562913	+	372	26553881	-	MYPE4290	-	adenylosuccinate synthetase
430	 30.27	+1	563054..564295	+	413	26553882	-	MYPE4300	-	hypothetical protein
431	 28.25	0	564326..566824	+	832	26553883	-	MYPE4310	-	putative integral membrane protein
432	 20.76	-1	566827..567645	+	272	26553884	-	MYPE4320	-	putative integral membrane protein
433	 31.38	+1	567854..569488	+	544	26553885	-	MYPE4330	-	hypothetical protein
434	 29.55	0	569953..571431	+	492	26553886	-	MYPE4340	-	hypothetical protein
435	 29.48	0	571884..573491	+	535	26553887	-	MYPE4350	-	hypothetical protein
436	 28.07	0	573754..575310	+	518	26553888	-	MYPE4360	-	hypothetical protein
437	 21.24	-1	575507..575845	+	112	26553889	-	MYPE4370	-	hypothetical protein
438	 25.53	0	575939..577297	+	452	26553890	-	MYPE4380	-	membrane nuclease
439	 22.32	-1	577350..577676	-	108	26553891	-	MYPE4390	-	hypothetical protein
440	 27.11	0	577744..578289	-	181	26553892	-	MYPE4400	-	inorganic pyrophosphatase
441	 27.63	0	578452..579363	+	303	26553893	-	MYPE4410	-	putative integral membrane protein
442	 27.72	0	579621..579923	+	100	26553894	rplU	MYPE4420	-	50S ribosomal protein L21
443	 24.60	0	579928..580236	+	102	26553895	-	MYPE4430	-	hypothetical protein
444	 27.43	0	580240..580527	+	95	26553896	rpmA	MYPE4440	-	50S ribosomal protein L27
445	 27.04	0	580606..581082	+	158	26553897	-	MYPE4450	-	hypothetical protein
446	 23.32	0	581220..581858	+	212	26553898	-	MYPE4460	-	d-ribulose-5-phosphate 3 epimerase
447	 19.39	-1	581933..583861	+	642	26553899	-	MYPE4470	-	BglG family transcriptional antiterminator
448	 27.82	0	583867..584301	+	144	26553900	-	MYPE4480	-	PTS system enzyme IIA component
449	 28.87	0	584304..584594	+	96	26553901	-	MYPE4490	-	hypothetical protein
450	 31.15	+1	584630..586141	+	503	26553902	ulaA	MYPE4500	-	ascorbate-specific PTS system enzyme IIC
451	 25.72	0	586141..588111	+	656	26553903	-	MYPE4510	-	transketolase
452	 21.08	-1	588098..588448	+	116	26553904	-	MYPE4520	-	HAD family phosphatase
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.