IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
243	 27.57	0	300102..301055	+	317	26553695	-	MYPE2430	-	integral membrane protein
244	 25.07	0	301605..302633	+	342	26553696	-	MYPE2440	-	hypothetical protein
245	 28.30	0	302904..303320	+	138	26553697	-	MYPE2450	-	integral membrane protein
246	 22.47	-1	303446..303979	+	177	26553698	-	MYPE2460	-	recombination protein U
247	 26.74	0	304156..305961	+	601	26553699	-	MYPE2470	-	ABC transporter ATP-binding protein
248	 29.10	0	305942..307879	+	645	26553700	-	MYPE2480	-	ABC transporter ATP-binding protein
249	 25.68	0	308014..308379	-	121	26553701	-	MYPE2490	-	DNA-binding histone-like protein HU-alpha
250	 27.64	0	308660..311680	+	1006	26553702	-	MYPE2500	-	integral membrane protein
251	 22.21	-1	311855..313894	+	679	26553703	-	MYPE2510	-	hypothetical protein
252	 23.08	0	313900..315948	+	682	26553704	-	MYPE2520	-	hypothetical protein
253	 29.52	0	316009..317346	+	445	26553705	-	MYPE2530	-	signal recognition particle GTPase
254	 27.91	0	317424..318161	+	245	26553706	-	MYPE2540	-	Zn-dependent protease
255	 25.81	0	318184..318369	+	61	26553707	-	MYPE2545	-	hypothetical protein
256	 28.68	0	318571..321945	+	1124	26553708	-	MYPE2550	-	hypothetical protein
257	 28.21	0	322127..325501	+	1124	26553709	-	MYPE2560	-	hypothetical protein
258	 26.26	0	325592..326920	-	442	26553710	-	MYPE2570	-	hypothetical protein
259	 27.73	0	327218..330610	+	1130	26553711	-	MYPE2580	-	hypothetical protein
260	 24.26	0	330665..331237	-	190	26553712	-	MYPE2590	-	acetyltransferase
261	 24.74	0	331244..331825	-	193	26553713	-	MYPE2600	-	acetyltransferase
262	 28.28	0	332074..335460	+	1128	26553714	-	MYPE2610	-	hypothetical protein
263	 29.68	+1	335914..337473	+	519	26553715	-	MYPE2620	-	P35 lipoprotein
264	 26.72	0	337750..339306	+	518	26553716	-	MYPE2630	-	P35 lipoprotein
265	 29.10	0	339473..340699	+	408	26553717	-	MYPE2640	-	permease
266	 26.32	0	340722..341705	+	327	26553718	-	MYPE2650	-	D-lactate dehydrogenase
267	 28.27	0	341814..345266	+	1150	26553719	-	MYPE2660	-	hypothetical protein
268	 27.69	0	345473..348841	+	1122	26553720	-	MYPE2670	-	hypothetical protein
269	 29.09	0	348982..352377	+	1131	26553721	-	MYPE2680	-	hypothetical protein
270	 30.17	+1	352719..353825	+	368	26553722	-	MYPE2690	-	P35 lipoprotein
271	 30.30	+1	354128..355279	+	383	26553723	-	MYPE2700	-	P35 lipoprotein
272	 27.94	0	355503..358874	+	1123	26553724	-	MYPE2710	-	MYPE 2560 paralog, 57%
273	 22.22	-1	359115..359294	+	59	26553725	-	MYPE2715	-	hypothetical protein
274	 20.26	-1	359352..359810	+	152	26553726	-	MYPE2720	-	hypothetical protein
275	 27.93	0	359871..361202	-	443	26553727	-	MYPE2730	-	serine hydroxymethyltransferase
276	 25.69	0	361235..362935	-	566	26553728	-	MYPE2740	-	threonyl-tRNA synthetase
277	 24.80	0	363053..363943	+	296	26553729	-	MYPE2750	-	hypothetical protein
278	 22.92	0	363963..364634	+	223	26553730	-	MYPE2760	-	hypothetical protein
279	 24.20	0	364650..365372	+	240	26553731	-	MYPE2770	-	cytidine diphosphocholine pyrophosphorylase
280	 24.36	0	365412..366380	-	322	26553732	ruvB	MYPE2780	-	Holliday junction DNA helicase B
281	 23.64	0	366346..367005	-	219	26553733	-	MYPE2790	-	holliday junction DNA helicase
282	 30.68	+1	367157..367420	-	87	26553734	-	MYPE2800	-	phosphocarrier HPr protein
283	 24.15	0	367537..369093	-	518	26553735	-	MYPE2810	-	cardiolipin synthase
284	 21.54	-1	369209..371023	+	604	26553736	-	MYPE2820	-	oligoendopeptidase F
285	 18.65	-2	371025..371807	+	260	26553737	-	MYPE2830	-	hypothetical protein
286	 21.46	-1	371804..373588	-	594	26553738	-	MYPE2840	-	hypothetical protein
287	 19.37	-1	373629..373850	+	73	26553739	-	MYPE2850	-	hypothetical protein
288	 24.20	0	374053..375333	+	426	26553740	hisS	MYPE2860	-	histidyl-tRNA synthetase
289	 26.39	0	375348..377090	+	580	26553741	aspS	MYPE2870	-	aspartyl-tRNA synthetase
290	 22.02	-1	377096..377758	+	220	26553742	-	MYPE2880	-	S-adenosylmethionine-dependent methyltransferase
291	 29.26	0	377857..379401	+	514	26553743	-	MYPE2890	-	hypothetical protein
292	 25.33	0	379569..380330	+	253	26553744	-	MYPE2900	-	recombinase
293	 23.49	0	380395..381024	+	209	26553745	-	MYPE2910	-	hypothetical protein
294	 24.22	0	381103..383154	-	683	26553746	-	MYPE2920	-	hypothetical protein
295	 25.93	0	383474..384013	+	179	26553747	-	MYPE2930	-	ferritin-like protein Rsg
296	 38.33	+2	384145..384324	+	59	26553748	-	MYPE2940	-	hypothetical protein
297	 29.91	+1	384825..385379	+	184	26553749	-	MYPE2950	-	NADPH-dependent reductase
298	 21.57	-1	385404..385913	+	169	26553750	-	MYPE2960	-	MarR family transcriptional regulator
299	 23.91	0	385989..386561	-	190	26553751	-	MYPE2970	-	MutT-like hydrolase
300	 22.75	0	386784..387416	+	210	26553752	-	MYPE2980	-	hypothetical protein
301	 27.48	0	387437..388342	+	301	26553753	-	MYPE2990	-	HPr kinase/phosphorylase
302	 27.17	0	388329..389399	+	356	26553754	-	MYPE3000	-	prolipoprotein diacylglyceryl transferase
303	 25.11	0	389456..390160	-	234	26553755	-	MYPE3010	-	potassium uptake protein KtrA
304	 28.23	0	390365..392245	+	626	26553756	-	MYPE3020	-	putative integral membrane protein
305	 26.61	0	392248..394284	+	678	26553757	-	MYPE3030	-	ABC transporter ATP-binding protein
306	 24.26	0	394387..395235	+	282	26553758	-	MYPE3040	-	hypothetical protein
307	 24.27	0	395232..395882	-	216	26553759	-	MYPE3050	-	d-ribulose-5-phosphate 3 epimerase
308	 21.90	-1	395995..397560	+	521	26553760	-	MYPE3060	-	hypothetical protein
309	 24.37	0	397613..398605	+	330	26553761	-	MYPE3070	-	putative integral membrane protein
310	 24.60	0	398544..399470	+	308	26553762	-	MYPE3080	-	ABC transporter ATP-binding protein
311	 30.59	+1	399578..401251	+	557	26553763	-	MYPE3090	-	hypothetical protein
312	 27.26	0	401408..402544	+	378	26553764	-	MYPE3100	-	hypothetical protein
313	 31.43	+1	403080..403709	-	209	26553765	-	MYPE3110	-	hypothetical protein
314	 27.78	0	403859..404290	-	143	26553766	-	MYPE3120	-	hypothetical protein
315	 21.44	-1	404776..405624	+	282	26553767	-	MYPE3130	-	choline kinase
316	 27.73	0	406653..410201	+	1182	26553768	-	MYPE3140	-	hypothetical protein
317	 29.48	0	410394..411845	+	483	26553769	-	MYPE3150	-	inosine-5'-monophosphate dehydrogenase
318	 27.87	0	412385..412567	-	60	26553770	-	MYPE3155	-	hypothetical protein
319	 26.18	0	412846..413712	+	288	26553771	-	MYPE3160	-	3-hydroxyisobutyrate dehydrogenase
320	 23.53	0	413714..416050	+	778	26553772	-	MYPE3170	-	HAD family phosphatase
321	 27.96	0	416257..417504	+	415	26553773	-	MYPE3180	-	glucosamine-6-phosphate isomerase
322	 27.28	0	417731..420685	+	984	26553774	-	MYPE3190	-	integral membrane protein
323	 21.98	-1	420777..421331	-	184	26553775	-	MYPE3200	-	DNA-3-methyladenine glycosidase I
324	 27.98	0	421510..424515	+	1001	26553776	-	MYPE3210	-	integral membrane protein
325	 23.75	0	424743..425681	+	312	26553777	-	MYPE3220	-	methyltransferase
326	 23.26	0	425681..426841	+	386	26553778	-	MYPE3230	-	hypothetical protein
327	 27.43	0	427007..427531	+	174	26553779	-	MYPE3240	-	cation-transporting p-type ATPase
328	 30.93	+1	427627..430041	+	804	26553780	-	MYPE3250	-	cation-transporting p-type ATPase
329	 23.68	0	430065..430406	+	113	26553781	-	MYPE3260	-	thioredoxin
330	 24.38	0	430503..431150	-	215	26553782	-	MYPE3270	-	large-conductance mechanosensitive channel
331	 25.65	0	431282..431854	+	190	26553783	-	MYPE3280	-	hypothetical protein
332	 22.08	-1	431890..432795	+	301	26553784	-	MYPE3290	-	hypothetical protein
333	 27.27	0	432923..433153	+	76	26553785	secG	MYPE3300	-	preprotein translocase subunit SecG
334	 25.78	0	433163..435346	+	727	26553786	-	MYPE3310	-	3'-5' exoribonuclease RNase R
335	 28.21	0	435571..436566	+	331	26553787	-	MYPE3320	-	dihydroxyacetone kinase
336	 27.40	0	436575..437198	+	207	26553788	-	MYPE3330	-	dihydroxyacetone kinase
337	 24.88	0	437202..437603	+	133	26553789	-	MYPE3340	-	PTS system enzyme I
338	 24.50	0	437778..438230	+	150	26553790	-	MYPE3350	-	hypothetical protein
339	 26.72	0	438223..438615	+	130	26553791	-	MYPE3360	-	diacylglycerol kinase
340	 22.39	-1	438704..439516	+	270	26553792	-	MYPE3370	-	GTP-binding protein Era-like protein
341	 21.99	-1	439516..440220	+	234	26553793	-	MYPE3380	-	hypothetical protein
342	 25.13	0	440246..441634	+	462	26553794	-	MYPE3390	-	glycyl-tRNA synthetase
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.