IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
167	 26.93	0	208836..210209	+	457	26553619	-	MYPE1660	-	hypothetical protein
168	 26.09	0	210312..212162	+	616	26553620	-	MYPE1670	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
169	 23.75	0	212334..212834	+	166	26553621	-	MYPE1680	-	hypothetical protein
170	 30.11	+1	213101..214465	+	454	26553622	-	MYPE1690	-	NADH oxidase
171	 29.76	+1	214628..215215	+	195	26553623	-	MYPE1700	-	acetyl transferase
172	 30.84	+1	215371..215691	+	106	26553624	-	MYPE1710	-	thioredoxin
173	 23.05	0	215896..216741	+	281	26553625	-	MYPE1720	-	transcriptional regulator
174	 28.35	0	216965..219310	+	781	26553626	-	MYPE1730	-	PTS system glucose-specific IIABC component
175	 26.70	0	219403..220095	+	230	26553627	-	MYPE1740	-	N-acetylmannosamine-6-phosphate 2-epimerase
176	 25.49	0	220295..221479	+	394	26553628	-	MYPE1750	-	N-acetylglucosamine 6-P deacetylase
177	 24.97	0	221487..222215	+	242	26553629	-	MYPE1760	-	N-acetylglucosamine 6-phosphate isomerase
178	 30.60	+1	222279..223340	-	353	26553630	-	MYPE1770	-	hypothetical protein
179	 23.44	0	223836..224876	+	346	26553631	-	MYPE1780	-	adenine-specific DNA methyltransferase
180	 21.90	-1	224839..225765	+	308	26553632	-	MYPE1790	-	adenine-specific DNA methyltransferase
181	 24.17	0	225777..227315	+	512	26553633	-	MYPE1800	-	hypothetical protein
182	 22.48	-1	227540..228442	-	300	26553634	-	MYPE1810	-	hypothetical protein
183	 29.22	0	228709..229584	+	291	26553635	-	MYPE1820	-	ABC transporter membrane protein
184	 21.07	-1	229692..231485	+	597	26553636	-	MYPE1830	-	hypothetical protein
185	 25.40	0	231463..233568	+	701	26553637	-	MYPE1840	-	NAD-dependent DNA ligase
186	 27.50	0	233602..234132	+	176	26553638	-	MYPE1850	-	6-O-methylguanine DNA methyltransferas
187	 31.72	+1	234225..234968	+	247	26553639	-	MYPE1860	-	hypothetical protein
188	 22.19	-1	235617..236549	+	310	26553640	-	MYPE1870	-	hypothetical protein
189	 21.84	-1	236559..237263	+	234	26553641	-	MYPE1880	-	ABC transporter ATP-binding protein
190	 27.86	0	237453..238091	+	212	26553642	acpD	MYPE1890	-	azoreductase
191	 27.76	0	238182..238952	+	256	26553643	-	MYPE1900	-	hypothetical protein
192	 27.33	0	238996..239478	-	160	26553644	-	MYPE1910	-	hypothetical protein
193	 22.65	0	239545..240162	+	205	26553645	-	MYPE1920	-	hypothetical protein
194	 26.36	0	240192..241481	+	429	26553646	obgE	MYPE1930	-	GTPase ObgE
195	 25.82	0	241494..242225	+	243	26553647	-	MYPE1940	-	NH(3)-dependent NAD+ synthetase
196	 27.25	0	242354..245491	+	1045	26553648	-	MYPE1950	-	putative integral membrane protein
197	 26.72	0	245654..248800	+	1048	26553649	-	MYPE1960	-	hypothetical protein
198	 18.68	-2	248978..249250	+	90	26553650	-	MYPE1970	-	hypothetical protein
199	 24.29	0	249228..252200	+	990	26553651	dnaE	MYPE1980	-	DNA polymerase III DnaE
200	 24.80	0	252208..253086	+	292	26553652	-	MYPE1990	-	DNA polymerase I: 5'-3' exonuclease
201	 23.98	0	253088..253921	+	277	26553653	-	MYPE2000	-	formamidopyrimidine-DNA glycosylase
202	 24.15	0	253894..254514	+	206	26553654	-	MYPE2010	-	hypothetical protein
203	 20.13	-1	254666..255922	+	418	26553655	-	MYPE2020	-	hypothetical protein
204	 23.16	0	255879..256910	+	343	26553656	-	MYPE2030	-	primosome component
205	 24.69	0	257095..257730	+	211	26553657	-	MYPE2040	-	hypothetical protein
206	 25.80	0	257827..259260	+	477	26553658	-	MYPE2050	-	replicative DNA helicase
207	 28.96	0	259334..260545	+	403	26553659	-	MYPE2060	-	hypothetical protein
208	 23.08	0	260583..261323	+	246	26553660	-	MYPE2070	-	uracil-DNA glycosylase
209	 27.09	0	261398..262471	+	357	26553661	-	MYPE2080	-	hypothetical protein
210	 26.16	0	262493..262771	+	92	26553662	-	MYPE2090	-	glutamyl-tRNA amidotransferase subunit C
211	 27.28	0	262774..264177	+	467	26553663	gatA	MYPE2100	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
212	 25.38	0	264155..265600	+	481	26553664	gatB	MYPE2110	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
213	 26.94	0	265777..266370	-	197	26553665	-	MYPE2120	-	hypothetical protein
214	 28.18	0	266507..269338	+	943	26553666	-	MYPE2130	-	cation-transporting P-type ATPase
215	 20.53	-1	269437..270303	+	288	26553667	-	MYPE2140	-	hypothetical protein
216	 23.38	0	270765..271658	+	297	26553668	-	MYPE2150	-	hypothetical protein
217	 21.52	-1	271714..272568	+	284	26553669	-	MYPE2160	-	hypothetical protein
218	 24.80	0	272771..273532	-	253	26553670	-	MYPE2170	-	insertion sequence IS232 putative ATP-binding protein
219	 25.97	0	273534..274946	-	470	26553671	-	MYPE2180	-	transposase for IS232-like insertion sequence element
220	 23.77	0	275215..276354	+	379	26553672	-	MYPE2190	-	hypothetical protein
221	 21.29	-1	276441..278084	-	547	26553673	-	MYPE2200	-	ABC transporter ATP-binding protein
222	 23.22	0	278077..279747	-	556	26553674	-	MYPE2210	-	ABC transporter ATP-binding protein
223	 19.82	-1	280126..282345	+	739	26553675	-	MYPE2220	-	hypothetical protein
224	 25.51	0	282399..282794	+	131	26553676	-	MYPE2230	-	hypothetical protein
225	 19.81	-1	282801..283628	-	275	26553677	-	MYPE2240	-	hypothetical protein
226	 25.73	0	283769..285043	-	424	26553678	-	MYPE2250	-	hypothetical protein
227	 28.17	0	285410..285835	+	141	26553679	-	MYPE2260	-	hypothetical protein
228	 20.00	-1	285919..286368	+	149	26553680	-	MYPE2270	-	hypothetical protein
229	 24.27	0	286413..287063	+	216	26553681	-	MYPE2280	-	cytidylate kinase
230	 25.39	0	287066..288400	+	444	26553682	engA	MYPE2290	-	GTP-binding protein EngA
231	 26.16	0	288390..289406	+	338	26553683	-	MYPE2300	-	NAD-dependent glycerol-3-phosphate dehydrogenase
232	 25.05	0	289619..291175	-	518	26553684	-	MYPE2310	-	IS1202-like transposase
233	 23.56	0	291534..292382	-	282	26553685	-	MYPE2330	-	hypothetical protein
234	 25.31	0	292522..294078	+	518	26553686	-	MYPE2340	-	transposase
235	 29.42	0	294686..295222	+	178	26553687	-	MYPE2350	-	integral membrane protein
236	 27.09	0	295417..296025	+	202	26553688	-	MYPE2360	-	integral membrane protein
237	 24.70	0	296149..296739	+	196	26553689	-	MYPE2370	-	integral membrane protein
238	 23.48	0	296876..297484	+	202	26553690	-	MYPE2380	-	integral membrane protein
239	 24.87	0	297729..298106	+	125	26553691	-	MYPE2390	-	hypothetical protein
240	 28.35	0	298054..298515	+	153	26553692	-	MYPE2400	-	integral membrane protein
241	 24.02	0	298660..299196	+	178	26553693	-	MYPE2410	-	integral membrane protein
242	 27.13	0	299403..300095	+	230	26553694	-	MYPE2420	-	integral membrane protein
243	 27.57	0	300102..301055	+	317	26553695	-	MYPE2430	-	integral membrane protein
244	 25.07	0	301605..302633	+	342	26553696	-	MYPE2440	-	hypothetical protein
245	 28.30	0	302904..303320	+	138	26553697	-	MYPE2450	-	integral membrane protein
246	 22.47	-1	303446..303979	+	177	26553698	-	MYPE2460	-	recombination protein U
247	 26.74	0	304156..305961	+	601	26553699	-	MYPE2470	-	ABC transporter ATP-binding protein
248	 29.10	0	305942..307879	+	645	26553700	-	MYPE2480	-	ABC transporter ATP-binding protein
249	 25.68	0	308014..308379	-	121	26553701	-	MYPE2490	-	DNA-binding histone-like protein HU-alpha
250	 27.64	0	308660..311680	+	1006	26553702	-	MYPE2500	-	integral membrane protein
251	 22.21	-1	311855..313894	+	679	26553703	-	MYPE2510	-	hypothetical protein
252	 23.08	0	313900..315948	+	682	26553704	-	MYPE2520	-	hypothetical protein
253	 29.52	0	316009..317346	+	445	26553705	-	MYPE2530	-	signal recognition particle GTPase
254	 27.91	0	317424..318161	+	245	26553706	-	MYPE2540	-	Zn-dependent protease
255	 25.81	0	318184..318369	+	61	26553707	-	MYPE2545	-	hypothetical protein
256	 28.68	0	318571..321945	+	1124	26553708	-	MYPE2550	-	hypothetical protein
257	 28.21	0	322127..325501	+	1124	26553709	-	MYPE2560	-	hypothetical protein
258	 26.26	0	325592..326920	-	442	26553710	-	MYPE2570	-	hypothetical protein
259	 27.73	0	327218..330610	+	1130	26553711	-	MYPE2580	-	hypothetical protein
260	 24.26	0	330665..331237	-	190	26553712	-	MYPE2590	-	acetyltransferase
261	 24.74	0	331244..331825	-	193	26553713	-	MYPE2600	-	acetyltransferase
262	 28.28	0	332074..335460	+	1128	26553714	-	MYPE2610	-	hypothetical protein
263	 29.68	+1	335914..337473	+	519	26553715	-	MYPE2620	-	P35 lipoprotein
264	 26.72	0	337750..339306	+	518	26553716	-	MYPE2630	-	P35 lipoprotein
265	 29.10	0	339473..340699	+	408	26553717	-	MYPE2640	-	permease
266	 26.32	0	340722..341705	+	327	26553718	-	MYPE2650	-	D-lactate dehydrogenase
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.