IslandPathversion 1.0

IslandPath Analysis: Mycoplasma hyopneumoniae J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 4.17
Mycoplasma hyopneumoniae J, complete genome - 1..897405
665 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
557	 29.56	0	733136..733585	-	149	71893916	-	MHJ_0566	-	hypothetical protein
558	 26.31	0	735198..735866	+	222	71893917	-	MHJ_0568	-	hypothetical protein
559	 32.46	0	735996..736223	-	75	71893918	-	MHJ_0569	-	hypothetical protein
560	 27.73	0	736231..736926	-	231	71893919	-	MHJ_0570	-	hypothetical protein
561	 28.20	0	736992..738881	-	629	71893920	-	MHJ_0571	-	hypothetical protein
562	 31.14	0	739135..740499	-	454	71893921	pdhD-1	MHJ_0572	-	dihydrolipoamide dehydrogenase
563	 27.39	0	740682..741842	+	386	71893922	nagA	MHJ_0573	-	N-acetylglucosamine-6-phosphate deacetylase
564	 29.08	0	741897..742718	-	273	71893923	fba-1	MHJ_0574	-	fructose-bisphosphate aldolase
565	 33.86	+1	742727..744436	-	569	71893924	-	MHJ_0575	-	putative PTS system, N-acetylglucosamine-specific II ABC component
566	 30.07	0	744532..745296	-	254	71893925	nagB	MHJ_0576	-	glucosamine-6-phosphate deaminase
567	 36.89	+1	745664..746281	+	205	71893926	rpsD	MHJ_0577	-	30S ribosomal protein S4
568	 30.57	0	746395..746829	+	144	71893927	rpiB	MHJ_0578	-	ribose-5-phosphate isomerase B
569	 29.35	0	746829..747656	+	275	71893928	fpg	MHJ_0579	-	formamidopyrimidine-DNA glycosylase
570	 23.07	-1	747767..748438	-	223	71893929	-	MHJ_0580	-	hypothetical protein
571	 30.34	0	748465..749598	-	377	71893930	mnuA	MHJ_0581	-	membrane nuclease, lipoprotein
572	 25.20	0	749620..750504	-	294	71893931	-	MHJ_0582	-	putative 5'-3' exonuclease
573	 28.99	0	750507..753452	-	981	71893932	dnaE	MHJ_0583	-	DNA polymerase III DnaE
574	 27.58	0	753503..753832	-	109	71893933	rbfA	MHJ_0584	-	ribosome-binding factor A
575	 35.00	+1	753844..755643	-	599	71893934	infB	MHJ_0585	-	translation initiation factor IF-2
576	 30.20	0	755910..757763	-	617	71893935	nusA	MHJ_0586	-	transcription elongation factor NusA
577	 30.00	0	758275..760281	+	668	71893936	pulA	MHJ_0587	-	pullulanase
578	 32.20	0	760382..761527	-	381	71893937	glpD	MHJ_0588	-	glycerol-3-phosphate dehydrogenase
579	 29.60	0	762018..763757	-	579	71893938	thrS	MHJ_0589	-	threonyl-tRNA synthetase
580	 31.00	0	763761..764747	-	328	71893939	trpS	MHJ_0590	-	tryptophanyl-tRNA synthetase
581	 21.76	-1	764805..765167	+	120	71893940	-	MHJ_0591	-	putative PTS system glucose-specific enzyme IIB component
582	 28.20	0	765210..768404	+	1064	71893941	-	MHJ_0592	-	putative ATP-binding protein
583	 25.27	0	768394..769137	+	247	71893942	rnhB	MHJ_0593	-	ribonuclease HII
584	 35.34	+1	769175..769423	+	82	71893943	-	MHJ_0594	-	hypothetical protein
585	 33.79	+1	769431..770948	+	505	71893944	pgm	MHJ_0595	-	phosphoglyceromutase
586	 29.31	0	771095..772486	+	463	71893945	-	MHJ_0596	-	hypothetical protein
587	 25.76	0	772530..774245	+	571	71893946	-	MHJ_0597	-	hypothetical protein
588	 29.19	0	774413..775837	+	474	71893947	-	MHJ_0598	-	hypothetical protein
589	 26.22	0	775914..777599	+	561	71893948	-	MHJ_0599	-	hypothetical protein
590	 26.45	0	777843..779600	+	585	71893949	-	MHJ_0600	-	hypothetical protein
591	 29.54	0	779795..781192	+	465	71893950	-	MHJ_0601	-	hypothetical protein
592	 25.83	0	781331..783037	+	568	71893951	-	MHJ_0602	-	hypothetical protein
593	 24.25	-1	783428..784297	+	289	71893952	-	MHJ_0603	-	hypothetical protein
594	 29.66	0	784299..785087	+	262	71893953	-	MHJ_0604	-	hypothetical protein
595	 26.52	0	785138..785695	+	185	71893954	ppa	MHJ_0605	-	inorganic pyrophosphatase
596	 33.48	+1	785962..787305	+	447	71893955	xylF	MHJ_0606	-	ABC transporter xylose-binding lipoprotein
597	 32.28	0	787470..788981	+	503	71893956	-	MHJ_0607	-	putative sugar ABC transporter ATP-binding protein
598	 26.04	0	788984..790696	+	570	71893957	-	MHJ_0608	-	putative ABC transporter protein
599	 32.56	0	790702..791607	+	301	71893958	-	MHJ_0609	-	putative sugar ABC transporter permease protein
600	 37.66	+2	791666..792220	+	184	71893959	tdk	MHJ_0610	-	thymidine kinase
601	 30.74	0	792469..792738	+	89	71893960	ptsH	MHJ_0611	-	phosphocarrier protein HPr
602	 31.08	0	792932..793552	+	206	71893961	-	MHJ_0612	-	hypothetical protein
603	 32.62	0	793881..796259	-	792	71893962	-	MHJ_0613	-	hypothetical protein
604	 34.05	+1	796360..798450	-	696	71893963	-	MHJ_0614	-	hypothetical protein
605	 34.65	+1	798962..799951	-	329	71893964	ddem	MHJ_0615	-	cytosine specific DNA methyltransferase
606	 25.00	-1	800252..800671	-	139	71893965	-	MHJ_0616	-	hypothetical protein
607	 34.49	+1	800678..804916	-	1412	71893966	rpoC	MHJ_0617	-	DNA-directed RNA polymerase subunit beta'
608	 34.75	+1	804973..808635	-	1220	71893967	rpoB	MHJ_0618	-	DNA-directed RNA polymerase subunit beta
609	 35.52	+1	808850..809215	-	121	71893968	rplL	MHJ_0619	-	50S ribosomal protein L7/L12
610	 32.93	0	809227..809724	-	165	161611217	rplJ	MHJ_0620	-	50S ribosomal protein L10
611	 33.49	+1	810113..812653	+	846	71893970	-	MHJ_0621	-	hypothetical protein
612	 31.68	0	812724..815144	+	806	71893971	-	MHJ_0622	-	putative lipoprotein
613	 23.27	-1	815173..816822	-	549	71893972	dam	MHJ_0623	-	DNA adenine methylase
614	 23.61	-1	817472..819085	+	537	71893973	-	MHJ_0624	-	putative ABC transporter ATP-binding - Pr1
615	 24.23	-1	819096..820709	+	537	71893974	-	MHJ_0625	-	putative ABC transporter ATP-binding protein - Pr2
616	 23.60	-1	821450..823813	-	787	71893975	-	MHJ_0627	-	hypothetical protein
617	 18.86	-2	824162..825757	+	531	71893976	-	MHJ_0628	-	putative ABC transporter ATP-binding - Pr1-like
618	 22.79	-1	825799..827382	+	527	71893977	-	MHJ_0629	-	putative ABC transporter ATP-binding - Pr2 - like
619	 30.07	0	827470..829278	-	602	71893978	-	MHJ_0630	-	hypothetical protein
620	 33.97	+1	829353..831089	-	578	71893979	-	MHJ_0631	-	putative 5'-nucleotidase precursor
621	 28.18	0	831839..832576	+	245	71893980	plsC	MHJ_0632	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
622	 30.69	0	832606..833325	+	239	71893981	scpA	MHJ_0633	-	segregation and condensation protein A
623	 35.94	+1	833327..833902	+	191	71893982	scpB	MHJ_0634	-	segregation and condensation protein B
624	 24.09	-1	833924..836185	+	753	71893983	-	MHJ_0635	-	hypothetical protein
625	 31.06	0	836729..837697	-	322	71893984	gcp	MHJ_0636	-	O-sialoglycoprotein endopeptidase
626	 33.51	+1	838234..838806	-	190	71893985	nusG	MHJ_0637	-	transcription antitermination protein NusG
627	 32.74	0	838826..839164	-	112	71893986	secE	MHJ_0638	-	preprotein translocase subunit SecE
628	 27.03	0	839255..839809	-	184	71893987	-	MHJ_0639	-	hypothetical protein
629	 28.63	0	839821..840522	-	233	71893988	-	MHJ_0640	-	putative tRNA/rRNA methyltransferase
630	 25.87	0	840556..841761	-	401	71893989	cysS	MHJ_0641	-	cysteinyl-tRNA synthetase
631	 25.04	-1	841757..842419	-	220	71893990	-	MHJ_0642	-	hypothetical protein
632	 28.79	0	842424..843656	-	410	71893991	-	MHJ_0643	-	putative hemolysin C
633	 30.10	0	843656..845047	-	463	71893992	dnaB	MHJ_0644	-	replicative DNA helicase
634	 29.22	0	845040..845477	-	145	71893993	rplI	MHJ_0645	-	50S ribosomal protein L9
635	 30.08	0	845458..847455	-	665	71893994	-	MHJ_0646	-	hypothetical protein
636	 30.85	0	847459..849831	-	790	71893995	leuS	MHJ_0647	-	leucyl-tRNA synthetase
637	 33.03	0	850039..852018	+	659	71893996	uvrB	MHJ_0648	-	excinuclease ABC subunit B
638	 23.73	-1	852040..852903	+	287	71893997	-	MHJ_0649	-	hypothetical protein
639	 39.85	+2	853091..853489	-	132	71893998	rpsI	MHJ_0650	-	30S ribosomal protein S9
640	 37.47	+1	853493..853927	-	144	71893999	rplM	MHJ_0651	-	50S ribosomal protein L13
641	 25.63	0	854060..854812	-	250	71894000	ksgA	MHJ_0652	-	dimethyladenosine transferase
642	 25.26	0	854820..856082	-	420	71894001	-	MHJ_0653	-	hypothetical protein
643	 32.73	0	856169..857155	+	328	71894002	prsA	MHJ_0654	-	ribose-phosphate pyrophosphokinase
644	 24.30	-1	857178..857786	+	202	71894003	gidB	MHJ_0655	-	glucose-inhibited division protein B
645	 29.72	0	857925..859808	+	627	71894004	-	MHJ_0656	-	putative prolipoprotein p65
646	 30.78	0	860006..862945	+	979	71894005	-	MHJ_0657	-	putative ABC transporter ATP-binding protein P115-like
647	 28.76	0	863067..863219	+	50	71894006	rpmG	MHJ_0658	-	50S ribosomal protein L33
648	 33.72	+1	863221..864258	+	345	71894007	pepP	MHJ_0659	-	XAA-Pro aminopeptidase
649	 26.29	0	864295..865998	+	567	71894008	-	MHJ_0660	-	hypothetical protein
650	 29.58	0	866056..867627	+	523	71894009	-	MHJ_0661	-	hypothetical protein
651	 33.25	0	868307..871843	-	1178	71894010	-	MHJ_0662	-	hypothetical protein
652	 32.87	0	871941..875852	-	1303	71894011	-	MHJ_0663	-	putative adhesin like-protein P146
653	 26.08	0	876401..877255	+	284	71894012	-	MHJ_0664	-	putative ABC transporter ATP-binding - Pr1
654	 30.21	0	877404..877691	+	95	71894013	-	MHJ_0665	-	hypothetical protein
655	 26.50	0	883176..883790	+	204	71894014	-	MHJ_0666	-	hypothetical protein
656	 35.20	+1	883831..884313	+	160	71894015	greA	MHJ_0667	-	transcription elongation factor
29.24	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.