IslandPathversion 1.0

IslandPath Analysis: Mycoplasma hyopneumoniae J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 4.17
Mycoplasma hyopneumoniae J, complete genome - 1..897405
665 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
462	 29.42	0	596348..597088	+	246	71893821	nadE	MHJ_0470	-	NH(3)-dependent NAD+ synthetase
463	 31.41	0	597088..597816	+	242	71893822	-	MHJ_0471	-	hypothetical protein
464	 27.78	0	597846..598475	-	209	71893823	pfs	MHJ_0472	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
465	 29.47	0	598483..599568	-	361	161611219	nadD	MHJ_0473	-	putative nicotinate-nucleotide adenylyltransferase
466	 33.01	0	599572..600492	-	306	71893825	-	MHJ_0474	-	hypothetical protein
467	 36.03	+1	601055..602428	-	457	161611218	atpD-1	MHJ_0475	-	F0F1 ATP synthase subunit beta
468	 35.02	+1	602431..603969	-	512	71893827	atpA	MHJ_0476	-	F0F1 ATP synthase subunit alpha
469	 31.24	0	603969..606119	-	716	71893828	-	MHJ_0477	-	hypothetical protein
470	 25.69	0	606196..606666	-	156	71893829	-	MHJ_0478	-	hypothetical protein
471	 27.47	0	606667..607536	-	289	71893830	-	MHJ_0479	-	hypothetical protein
472	 31.39	0	607552..608118	-	188	71893831	-	MHJ_0480	-	hypothetical protein
473	 26.25	0	608131..609711	-	526	71893832	-	MHJ_0481	-	hypothetical protein
474	 29.73	0	610004..610807	+	267	71893833	-	MHJ_0482	-	hypothetical protein
475	 28.51	0	610852..611556	-	234	71893834	-	MHJ_0483	-	hypothetical protein
476	 32.30	0	611657..613111	-	484	71893835	mgtE	MHJ_0484	-	putative MG2+ transport protein
477	 33.17	0	613127..613738	-	203	71893836	-	MHJ_0485	-	hypothetical protein
478	 32.61	0	613971..616610	-	879	71893837	-	MHJ_0486	-	hypothetical protein
479	 34.16	+1	617070..618284	+	404	71893838	pgk	MHJ_0487	-	phosphoglycerate kinase
480	 24.31	-1	618459..618713	+	84	71893839	-	MHJ_0488	-	hypothetical protein
481	 35.75	+1	618830..620812	+	660	71893840	fruA	MHJ_0489	-	PTS system, fructose-specific IIABC component
482	 23.51	-1	620812..621096	+	94	71893841	-	MHJ_0490	-	hypothetical protein
483	 33.87	+1	621108..622031	+	307	71893842	-	MHJ_0491	-	putative mannose-6-phosphate isomerase
484	 26.58	0	622335..623993	+	552	71893843	-	MHJ_0492	-	putative ISMHp1 transposase
485	 31.29	0	624355..629991	-	1878	71893844	-	MHJ_0493	-	putative P216 surface protein
486	 33.26	0	630118..634401	-	1427	71893845	-	MHJ_0494	-	putative p76 membrane protein precursor
487	 23.06	-1	634692..635918	-	408	71893846	-	MHJ_0495	-	hypothetical protein
488	 27.56	0	635956..637584	-	542	71893847	-	MHJ_0496	-	hypothetical protein
489	 26.06	0	637586..638548	-	320	71893848	-	MHJ_0497	-	asparagine synthetase A
490	 27.84	0	638850..641177	-	775	71893849	oppF	MHJ_0498	-	oligopeptide ABC transporter ATP-binding protein
491	 32.95	0	641174..642226	-	350	71893850	oppD	MHJ_0499	-	oligopeptide ABC transporte ATP binding protein
492	 30.05	0	642226..643383	-	385	71893851	oppC	MHJ_0500	-	oligopeptide transport system permease protein
493	 33.14	0	643376..644410	-	344	71893852	oppB	MHJ_0501	-	oligopeptide ABC transporter permease protein
494	 32.91	0	644416..647232	-	938	71893853	-	MHJ_0502	-	putative lipoprotein
495	 36.37	+1	648264..649184	+	306	71893854	pdhC	MHJ_0503	-	dihydrolipoamide acetyltransferase
496	 36.63	+1	649184..651031	+	615	71893855	pdhD	MHJ_0504	-	dihydrolipoamide dehydrogenase
497	 35.15	+1	651263..652471	-	402	71893856	ackA	MHJ_0505	-	acetate kinase
498	 34.80	+1	652471..653424	-	317	71893857	eutD	MHJ_0506	-	phosphotransacetylase
499	 23.27	-1	653544..654557	-	337	71893858	-	MHJ_0507	-	hypothetical protein
500	 25.48	0	654562..654981	-	139	71893859	-	MHJ_0508	-	hypothetical protein
501	 29.03	0	655206..655577	-	123	71893860	-	MHJ_0509	-	hypothetical protein
502	 23.12	-1	655579..656391	-	270	71893861	-	MHJ_0510	-	hypothetical protein
503	 33.10	0	656714..657973	+	419	71893862	-	MHJ_0511	-	putative 46K surface antigen precursor
504	 31.97	0	658093..659637	+	514	71893863	xylG	MHJ_0512	-	xylose ABC transporter ATP-binding protein
505	 31.97	0	659637..660887	+	416	71893864	xylH	MHJ_0513	-	xylose ABC transporter permease protein
506	 20.92	-1	660892..661455	+	187	71893865	-	MHJ_0514	-	hypothetical protein
507	 30.57	0	661466..662335	+	289	71893866	glck	MHJ_0515	-	glucokinase
508	 25.40	0	662575..662826	-	83	71893867	-	MHJ_0516	-	hypothetical protein
509	 26.64	0	662913..664571	+	552	71893868	-	MHJ_0517	-	putative ISMHp1 transposase
510	 21.05	-1	664639..665460	-	273	71893869	-	MHJ_0518	-	hypothetical protein
511	 23.73	-1	665604..666467	-	287	71893870	-	MHJ_0519	-	hypothetical protein
512	 24.73	-1	666526..666897	-	123	71893871	-	MHJ_0520	-	hypothetical protein
513	 23.81	-1	667156..667428	-	90	71893872	-	MHJ_0521	-	hypothetical protein
514	 28.24	0	667980..669824	-	614	71893873	pepF	MHJ_0522	-	oligoendopeptidase F
515	 24.34	-1	669939..675953	+	2004	71893874	-	MHJ_0523	-	hypothetical protein
516	 40.36	+2	676055..677263	-	402	71893875	tuf	MHJ_0524	-	elongation factor Tu
517	 33.83	+1	677562..680180	-	872	71893876	lon	MHJ_0525	-	heat shock ATP-dependent protease
518	 25.57	0	680345..681040	-	231	71893877	-	MHJ_0526	-	hypothetical protein
519	 30.57	0	681043..681657	-	204	71893878	upp	MHJ_0527	-	uracil phosphoribosyltransferase
520	 30.33	0	681750..682415	-	221	71893879	deoC	MHJ_0528	-	deoxyribose-phosphate aldolase
521	 32.57	0	682812..685418	+	868	71893880	gyrA	MHJ_0529	-	DNA gyrase subunit A
522	 32.17	0	685469..685897	-	142	71893881	pmsR	MHJ_0530	-	methionine sulfoxide reductase B
523	 28.17	0	685973..686437	-	154	71893882	-	MHJ_0531	-	hypothetical protein
524	 29.84	0	686494..687783	-	429	71893883	pgiB	MHJ_0532	-	glucose-6-phosphate isomerase
525	 30.16	0	687922..692328	-	1468	71893884	polC	MHJ_0533	-	DNA polymerase III PolC
526	 23.62	-1	692362..693288	-	308	71893885	-	MHJ_0534	-	putative phosphatidate cytidylyltransferase synthase
527	 29.52	0	693290..693814	-	174	71893886	frr	MHJ_0535	-	ribosome recycling factor
528	 33.76	+1	693854..694564	-	236	71893887	pyrH	MHJ_0536	-	uridylate kinase
529	 27.72	0	694685..696073	+	462	71893888	-	MHJ_0537	-	hypothetical protein
530	 22.03	-1	696109..696639	+	176	71893889	-	MHJ_0538	-	hypothetical protein
531	 26.34	0	696785..698443	-	552	71893890	-	MHJ_0539	-	putative ISMHp1 transposase
532	 27.82	0	698614..699465	-	283	71893891	-	MHJ_0540	-	hypothetical protein
533	 29.38	0	699486..701156	-	556	71893892	-	MHJ_0541	-	hypothetical protein
534	 27.15	0	701186..702010	-	274	71893893	potC	MHJ_0542	-	spermidine/putrescine ABC transporter permease protein
535	 29.14	0	702003..702812	-	269	71893894	potB	MHJ_0543	-	spermidine/putrescine ABC transporter permease protein
536	 30.19	0	702850..704184	-	444	71893895	potA	MHJ_0544	-	spermidine/putrescine transport system ATP-binding protein
537	 26.67	0	704913..705167	+	84	71893896	-	MHJ_0545	-	hypothetical protein
538	 21.07	-1	705179..705439	+	86	71893897	-	MHJ_0546	-	hypothetical protein
539	 24.82	-1	705470..706879	+	469	71893898	-	MHJ_0547	-	hypothetical protein
540	 33.76	+1	706960..707655	-	231	71893899	ktrA	MHJ_0548	-	potassium uptake protein
541	 29.70	0	707953..709437	+	494	71893900	ktrB	MHJ_0549	-	potassium uptake protein
542	 26.58	0	709745..711403	-	552	71893901	-	MHJ_0550	-	putative ISMHp1 transposase
543	 25.48	0	711672..715697	-	1341	71893902	-	MHJ_0551	-	hypothetical protein
544	 27.97	0	716116..716544	-	142	71893903	mtlF	MHJ_0552	-	PTS system mannitol-specific component IIA
545	 25.52	0	716535..717647	-	370	71893904	mtlD	MHJ_0553	-	mannitol-1-phosphate 5-dehydrogenase
546	 32.93	0	717638..719113	-	491	71893905	mtlA	MHJ_0554	-	PTS system, mannitol-specific IIBC component
547	 23.28	-1	719140..719925	+	261	71893906	-	MHJ_0555	-	hypothetical protein
548	 33.86	+1	720244..721758	-	504	71893907	ulaA	MHJ_0556	-	ascorbate-specific PTS system enzyme IIC
549	 27.54	0	721774..722049	-	91	71893908	-	MHJ_0557	-	putative PTS system galactitol-specific enzyme IIB component
550	 28.30	0	722039..722455	-	138	71893909	-	MHJ_0558	-	putative PTS system enzyme IIA component
551	 20.09	-2	722796..723452	-	218	71893910	-	MHJ_0559	-	hypothetical protein
552	 27.25	0	724067..724723	-	218	71893911	-	MHJ_0560	-	putative d-ribulose-5-phosphate 3 epimerase
553	 26.37	0	725485..727164	-	559	71893912	-	MHJ_0561	-	hypothetical protein
554	 28.89	0	727226..727675	-	149	71893913	-	MHJ_0562	-	hypothetical protein
555	 26.64	0	729302..730960	+	552	71893914	-	MHJ_0564	-	putative ISMHp1 transposase
556	 26.07	0	731395..733074	-	559	71893915	-	MHJ_0565	-	hypothetical protein
557	 29.56	0	733136..733585	-	149	71893916	-	MHJ_0566	-	hypothetical protein
558	 26.31	0	735198..735866	+	222	71893917	-	MHJ_0568	-	hypothetical protein
559	 32.46	0	735996..736223	-	75	71893918	-	MHJ_0569	-	hypothetical protein
560	 27.73	0	736231..736926	-	231	71893919	-	MHJ_0570	-	hypothetical protein
561	 28.20	0	736992..738881	-	629	71893920	-	MHJ_0571	-	hypothetical protein
29.24	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.