IslandPathversion 1.0

IslandPath Analysis: Mycoplasma hyopneumoniae J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 4.17
Mycoplasma hyopneumoniae J, complete genome - 1..897405
665 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
352	 25.44	0	436327..438048	+	573	71893711	-	MHJ_0358	-	putative ABC transport system permease protein p69 - like
353	 29.35	0	438156..438632	+	158	71893712	-	MHJ_0359	-	hypothetical protein
354	 24.01	-1	438650..439936	+	428	71893713	-	MHJ_0360	-	hypothetical protein
355	 22.94	-1	439948..440784	+	278	71893714	-	MHJ_0361	-	hypothetical protein
356	 30.46	0	441117..443312	+	731	71893715	-	MHJ_0362	-	putative lipoprotein
357	 32.18	0	443369..445444	+	691	71893716	-	MHJ_0363	-	putative lipoprotein
358	 29.26	0	445471..446403	+	310	71893717	-	MHJ_0364	-	putative lipoprotein
359	 30.44	0	446522..448594	+	690	71893718	-	MHJ_0365	-	putative ABC transporter permease protein
360	 34.13	+1	448603..449604	+	333	71893719	-	MHJ_0366	-	putative ABC transport permease protein
361	 36.23	+1	449600..450532	+	310	71893720	-	MHJ_0367	-	putative ABC transporter permease protein
362	 29.05	0	450864..453737	-	957	71893721	-	MHJ_0368	-	putative Lppt protein
363	 27.50	0	453750..456698	-	982	71893722	-	MHJ_0369	-	hypothetical protein
364	 32.92	0	456869..457348	-	159	71893723	sgaA	MHJ_0370	-	PTS system, IIA component
365	 33.68	+1	457373..457663	-	96	71893724	-	MHJ_0371	-	putative PTS system enzyme IIB component
366	 35.65	+1	458086..459855	-	589	71893725	ulaA	MHJ_0372	-	ascorbate-specific PTS system enzyme IIC
367	 35.61	+1	459953..461005	-	350	71893726	-	MHJ_0373	-	hypothetical protein
368	 32.40	0	461191..463005	-	604	71893727	-	MHJ_0374	-	putative lipoprotein
369	 25.69	0	463146..464309	+	387	71893728	-	MHJ_0375	-	putative ABC transport ATP-binding protein
370	 28.06	0	464305..465234	+	309	71893729	-	MHJ_0376	-	putative ABC transporter permease protein
371	 22.83	-1	465230..466057	+	275	71893730	-	MHJ_0377	-	putative ABC transporter permease protein
372	 26.82	0	466127..466633	+	168	71893731	-	MHJ_0378	-	putative proline dipeptidase
373	 29.16	0	466743..469043	+	766	71893732	-	MHJ_0379	-	putative ABC transporter ATP-binding protein
374	 32.73	0	469140..469472	-	110	71893733	-	MHJ_0380	-	thioredoxin
375	 30.90	0	469539..470978	-	479	71893734	proS	MHJ_0381	-	prolyl-tRNA synthetase
376	 25.87	0	473202..474929	+	575	71893735	-	MHJ_0383	-	putative type III restriction-modification system: methylase
377	 23.80	-1	474947..477379	+	810	71893736	-	MHJ_0384	-	hypothetical protein
378	 23.25	-1	478192..478419	-	75	71893737	-	MHJ_0385	-	putative transposase
379	 30.07	0	478477..478629	-	50	71893738	-	MHJ_0386	-	putative partial transposase
380	 24.93	-1	478604..479305	-	233	71893739	-	MHJ_0387	-	putative partial transposase
381	 21.11	-1	479478..479657	-	59	71893740	-	MHJ_0388	-	hypothetical protein
382	 22.40	-1	479807..480739	+	310	71893741	-	MHJ_0389	-	hypothetical protein
383	 23.25	-1	480789..481016	-	75	71893742	-	MHJ_0390	-	putative transposase
384	 25.90	0	481201..481698	-	165	71893743	-	MHJ_0391	-	putative partial transposase
385	 24.89	-1	481640..481864	-	74	71893744	-	MHJ_0392	-	putative parital transposase
386	 20.56	-2	482037..482216	-	59	71893745	-	MHJ_0393	-	hypothetical protein
387	 20.69	-2	482355..483161	-	268	71893746	-	MHJ_0394	-	hypothetical protein
388	 23.86	-1	483185..483976	-	263	71893747	-	MHJ_0395	-	hypothetical protein
389	 21.95	-1	484167..484904	-	245	71893748	-	MHJ_0396	-	hypothetical protein
390	 27.75	0	484906..485496	-	196	71893749	-	MHJ_0397	-	hypothetical protein
391	 22.84	-1	485839..487020	-	393	71893750	-	MHJ_0398	-	hypothetical protein
392	 25.00	-1	489229..489444	+	71	71893751	-	MHJ_0400	-	hypothetical protein
393	 27.31	0	489474..489905	+	143	71893752	-	MHJ_0401	-	hypothetical protein
394	 23.85	-1	489946..490272	+	108	71893753	-	MHJ_0402	-	hypothetical protein
395	 26.09	0	490301..491680	-	459	71893754	-	MHJ_0403	-	hypothetical protein
396	 31.97	0	492459..492899	+	146	71893755	-	MHJ_0404	-	cell division protein MraZ
397	 31.65	0	492901..493791	+	296	71893756	-	MHJ_0405	-	putative S-adenosyl-methyltransferase
398	 29.92	0	493840..494805	+	321	71893757	ftsZ	MHJ_0406	-	cell division protein ftsZ
399	 34.02	+1	495034..496047	+	337	71893758	-	MHJ_0407	-	nicotinate phosphoribosyltransferase
400	 29.88	0	496055..496807	+	250	71893759	-	MHJ_0408	-	putative DNA methylase
401	 27.04	0	496800..498341	+	513	71893760	metG	MHJ_0409	-	methionyl-tRNA synthetase
402	 24.89	-1	498338..499213	-	291	71893761	-	MHJ_0410	-	hypothetical protein
403	 30.70	0	499414..500097	-	227	71893762	rnc	MHJ_0411	-	ribonuclease III
404	 26.88	0	500162..500719	-	185	71893763	-	MHJ_0412	-	hypothetical protein
405	 26.77	0	501028..502551	+	507	71893764	-	MHJ_0413	-	hypothetical protein
406	 32.37	0	503044..504393	+	449	71893765	asnC	MHJ_0414	-	asparaginyl-tRNA synthetase
407	 21.66	-1	504455..505045	+	196	71893766	-	MHJ_0415	-	hypothetical protein
408	 31.24	0	505062..507308	+	748	71893767	pcrA	MHJ_0416	-	ATP-dependent helicase PcrA
409	 24.42	-1	507310..508734	+	474	71893768	-	MHJ_0417	-	hypothetical protein
410	 31.53	0	508838..509503	+	221	71893769	ruvA	MHJ_0418	-	Holliday junction DNA helicase motor protein
411	 31.52	0	509499..510437	+	312	71893770	ruvB	MHJ_0419	-	Holliday junction DNA helicase B
412	 26.04	0	510453..512276	-	607	71893771	-	MHJ_0420	-	hypothetical protein
413	 28.20	0	512372..513520	-	382	71893772	-	MHJ_0421	-	hypothetical protein
414	 30.84	0	513777..514499	-	240	71893773	-	MHJ_0422	-	hypothetical protein
415	 30.38	0	514625..516283	-	552	71893774	-	MHJ_0423	-	putative type III restriction-modification system: methylase
416	 39.37	+2	516642..516989	-	115	71893775	-	MHJ_0424	-	hypothetical protein
417	 32.62	0	517247..517804	+	185	71893776	efp	MHJ_0425	-	elongation factor P
418	 33.66	+1	517842..519689	+	615	71893777	tkt	MHJ_0426	-	transketolase
419	 27.74	0	519847..520758	+	303	71893778	-	MHJ_0427	-	hypothetical protein
420	 32.53	0	520758..521876	+	372	71893779	trmU	MHJ_0428	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
421	 31.06	0	521916..523145	-	409	71893780	-	MHJ_0429	-	hypothetical protein
422	 31.19	0	523347..524744	-	465	71893781	-	MHJ_0430	-	hypothetical protein
423	 32.24	0	524949..526868	-	639	71893782	-	MHJ_0431	-	hypothetical protein
424	 25.40	0	526991..527494	-	167	71893783	-	MHJ_0432	-	hypothetical protein
425	 31.08	0	527496..528338	-	280	71893784	-	MHJ_0433	-	hypothetical protein
426	 37.34	+1	528376..529098	-	240	71893785	araD	MHJ_0434	-	L-ribulose-5-phosphate 4-epimerase
427	 30.85	0	529088..529972	-	294	71893786	sgaU	MHJ_0435	-	L-xylulose 5-phosphate 3-epimerase
428	 37.37	+1	529953..530621	-	222	71893787	ulaD	MHJ_0436	-	3-keto-L-gulonate-6-phosphate decarboxylase
429	 34.39	+1	530936..533023	-	695	71893788	-	MHJ_0437	-	hypothetical protein
430	 28.49	0	533223..534812	-	529	71893789	-	MHJ_0438	-	hypothetical protein
431	 26.58	0	535032..536690	+	552	71893790	-	MHJ_0439	-	putative transposase
432	 31.90	0	536765..537043	+	92	71893791	-	MHJ_0440	-	hypothetical protein
433	 32.45	0	537119..539035	-	638	71893792	-	MHJ_0441	-	hypothetical protein
434	 34.93	+1	539756..544771	-	1671	71893793	-	MHJ_0442	-	hypothetical protein
435	 30.81	0	544822..551238	-	2138	71893794	-	MHJ_0443	-	hypothetical protein
436	 33.91	+1	551339..556051	-	1570	71893795	-	MHJ_0444	-	hypothetical protein
437	 30.85	0	556075..563295	-	2406	71893796	-	MHJ_0445	-	hypothetical protein
438	 30.45	0	563611..564165	-	184	71893797	-	MHJ_0446	-	GTPase EngB
439	 33.47	+1	564349..565089	-	246	71893798	-	MHJ_0447	-	hypothetical protein
440	 35.19	+1	565392..566525	-	377	71893799	metK	MHJ_0448	-	S-adenosylmethionine synthetase
441	 35.37	+1	566618..567502	-	294	71893800	-	MHJ_0449	-	putative ABC transporter ATP-binding protein
442	 29.06	0	567623..575605	-	2660	71893801	-	MHJ_0450	-	hypothetical protein
443	 28.03	0	575771..576355	+	194	71893802	acpD	MHJ_0451	-	acyl carrier protein phosphodiesterase
444	 29.37	0	576369..576974	+	201	71893803	acpD-1	MHJ_0452	-	acyl carrier protein phosphodiesterase
445	 37.39	+1	577033..577254	+	73	71893804	rpmE	MHJ_0453	-	50S ribosomal protein L31
446	 25.75	0	577275..577709	+	144	71893805	napA	MHJ_0454	-	neutrophil activating factor
447	 32.64	0	577732..578601	+	289	71893806	rluD	MHJ_0455	-	ribosomal large subunit pseudouridine synthase D
448	 36.21	+1	578662..579357	-	231	71893807	rplA	MHJ_0456	-	50S ribosomal protein L1
449	 35.56	+1	579359..579808	-	149	71893808	rplK	MHJ_0457	-	50S ribosomal protein L11
450	 29.72	0	580400..580897	+	165	71893809	-	MHJ_0458	-	hypothetical protein
451	 30.30	0	581234..581794	+	186	71893810	-	MHJ_0459	-	hypothetical protein
29.24	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.