IslandPathversion 1.0

IslandPath Analysis: Mycoplasma hyopneumoniae J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 4.17
Mycoplasma hyopneumoniae J, complete genome - 1..897405
665 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
236	 29.43	0	284636..287272	-	878	71893595	-	MHJ_0239	-	putative TRSE-like protein
237	 31.15	0	287311..289557	-	748	71893596	-	MHJ_0240	-	hypothetical protein
238	 27.82	0	289865..290644	-	259	71893597	smf	MHJ_0241	-	DNA processing protein SMF
239	 34.37	+1	290939..292294	+	451	71893598	eno	MHJ_0242	-	phosphopyruvate hydratase
240	 31.49	0	292303..293547	+	414	71893599	serS	MHJ_0243	-	seryl-tRNA synthetase
241	 29.65	0	293627..294196	+	189	71893600	-	MHJ_0244	-	hypothetical protein
242	 29.21	0	294199..294999	-	266	71893601	lip	MHJ_0245	-	triacylglycerol lipase
243	 27.45	0	295000..296001	-	333	71893602	lplA	MHJ_0246	-	lipoate-protein ligase A
244	 25.64	0	296015..296365	-	116	71893603	-	MHJ_0247	-	hypothetical protein
245	 26.58	0	296477..298624	+	715	71893604	dnaX	MHJ_0248	-	DNA polymerase III subunits gamma and tau
246	 22.88	-1	298662..298967	+	101	71893605	-	MHJ_0249	-	hypothetical protein
247	 28.72	0	298970..299554	+	194	71893606	recR	MHJ_0250	-	recombination protein RecR
248	 30.69	0	299551..300192	+	213	71893607	tmk	MHJ_0251	-	thymidylate kinase
249	 23.99	-1	300233..301045	+	270	71893608	-	MHJ_0252	-	DNA polymerase III subunit delta'
250	 25.29	0	301175..301783	+	202	71893609	-	MHJ_0253	-	hypothetical protein
251	 28.31	0	301816..302352	+	178	71893610	hpt	MHJ_0254	-	hypoxanthine-guanine phosphoribosyltransferase
252	 30.53	0	302382..303200	+	272	71893611	-	MHJ_0255	-	cobalt transporter ATP-binding subunit
253	 30.68	0	303173..304075	+	300	71893612	-	MHJ_0256	-	cobalt transporter ATP-binding subunit
254	 29.60	0	304065..305027	+	320	71893613	-	MHJ_0257	-	ABC transporter permease
255	 28.39	0	305028..307109	+	693	71893614	lig	MHJ_0258	-	DNA ligase
256	 29.14	0	307179..308132	+	317	71893615	-	MHJ_0259	-	hypothetical protein
257	 29.22	0	308129..310702	-	857	71893616	mgtA	MHJ_0260	-	cation-transporting P-type ATPase
258	 30.14	0	310834..311271	+	145	71893617	smpB	MHJ_0261	-	SsrA-binding protein
259	 29.67	0	311271..311897	+	208	71893618	-	MHJ_0262	-	putative nuclease, lipoprotein
260	 27.10	0	312028..315012	-	994	71893619	-	MHJ_0263	-	putative P102 - like
261	 24.74	-1	315111..318182	-	1023	71893620	-	MHJ_0264	-	putative P97 - like
262	 29.86	0	318698..319387	+	229	71893621	pheS	MHJ_0265	-	phenylalanyl-tRNA synthetase alpha chain
263	 28.09	0	319398..321554	+	718	71893622	pheT	MHJ_0266	-	phenylalanyl-tRNA synthetase subunit beta
264	 31.82	0	321613..321810	+	65	71893623	rpmF	MHJ_0267	-	50S ribosomal protein L32
265	 28.47	0	322434..323276	+	280	71893624	truB	MHJ_0268	-	tRNA pseudouridine synthase B
266	 29.81	0	323278..324099	+	273	71893625	-	MHJ_0269	-	hypothetical protein
267	 25.65	0	324092..324937	+	281	71893626	-	MHJ_0270	-	hypothetical protein
268	 27.72	0	324934..325752	-	272	71893627	-	MHJ_0271	-	putative transcriptional regulator
269	 31.90	0	326279..327883	+	534	161611221	pyrG	MHJ_0272	-	CTP synthetase
270	 26.46	0	327895..328461	-	188	71893629	pgsA	MHJ_0273	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
271	 20.99	-1	328464..329111	-	215	71893630	-	MHJ_0274	-	hypothetical protein
272	 30.68	0	329142..331064	-	640	71893631	topA	MHJ_0275	-	DNA topoisomerase I
273	 29.78	0	331057..331422	-	121	71893632	rplS	MHJ_0276	-	50S ribosomal protein L19
274	 30.70	0	331476..332159	-	227	71893633	trmD	MHJ_0277	-	tRNA (guanine-N1)-methyltransferase
275	 34.46	+1	332181..332447	-	88	71893634	rpsP	MHJ_0278	-	30S ribosomal protein S16
276	 28.70	0	332735..333187	-	150	71893635	-	MHJ_0279	-	hypothetical protein
277	 26.53	0	333347..335404	-	685	71893636	-	MHJ_0280	-	putative ABC transporter ATP-binding protein
278	 21.73	-1	335642..337528	-	628	71893637	-	MHJ_0281	-	hypothetical protein
279	 33.33	0	337532..338071	-	179	71893638	-	MHJ_0282	-	hypothetical protein
280	 25.67	0	338677..339198	+	173	71893639	-	MHJ_0283	-	hypothetical protein
281	 29.89	0	339318..340421	-	367	71893640	ychF	MHJ_0284	-	translation-associated GTPase
282	 34.09	+1	340431..340694	-	87	161611220	rpsR	MHJ_0285	-	30S ribosomal protein S18
283	 34.22	+1	340712..341272	-	186	71893642	ssb	MHJ_0286	-	single-strand binding protein
284	 31.27	0	341290..342015	-	241	71893643	rpsF	MHJ_0287	-	30S ribosomal protein S6
285	 24.85	-1	342721..343863	-	380	71893644	-	MHJ_0288	-	hypothetical protein
286	 27.97	0	343902..344666	-	254	71893645	-	MHJ_0289	-	hypothetical protein
287	 24.83	-1	344847..345599	+	250	71893646	-	MHJ_0290	-	hypothetical protein
288	 26.78	0	346450..347547	+	365	71893647	-	MHJ_0291	-	hypothetical protein
289	 27.78	0	347703..348098	+	131	71893648	-	MHJ_0292	-	hypothetical protein
290	 25.53	0	348157..348579	+	140	71893649	-	MHJ_0293	-	hypothetical protein
291	 30.26	0	348732..350165	+	477	71893650	-	MHJ_0294	-	putative permease
292	 27.07	0	350158..350892	+	244	71893651	ugpQ	MHJ_0295	-	glycerophosphoryl diester phosphodiesterase
293	 25.04	-1	351466..353418	-	650	71893652	-	MHJ_0297	-	putative ABC transporter ATP-binding protein
294	 25.27	0	353495..355777	-	760	71893653	-	MHJ_0298	-	putative ABC transporter ATP-binding protein
295	 30.70	0	355743..356654	-	303	71893654	-	MHJ_0299	-	hypothetical protein
296	 26.73	0	357335..363076	+	1913	71893655	-	MHJ_0300	-	hypothetical protein
297	 30.78	0	363383..364555	-	390	71893656	baiH	MHJ_0301	-	NADH-dependent flavin oxidoreductase
298	 27.91	0	364558..365589	-	343	71893657	lplA-1	MHJ_0302	-	lipoate-protein ligase A
299	 25.03	-1	365592..366434	-	280	71893658	-	MHJ_0303	-	hypothetical protein
300	 26.13	0	366436..366768	-	110	71893659	-	MHJ_0304	-	putative glycine cleavage system H protein
301	 31.14	0	367181..368002	+	273	71893660	-	MHJ_0305	-	hypothetical protein
302	 26.00	0	368005..370323	+	772	71893661	-	MHJ_0306	-	putative ABC transporter ATP-binding protein
303	 24.27	-1	370415..372367	+	650	71893662	-	MHJ_0307	-	putative ABC transporter ATP-binding protein
304	 25.54	0	374223..376634	+	803	71893663	-	MHJ_0309	-	hypothetical protein
305	 26.58	0	377193..378851	-	552	71893664	-	MHJ_0310	-	putative ISMHp1 transposase
306	 27.49	0	379203..380228	+	341	71893665	-	MHJ_0311	-	hypothetical protein
307	 24.25	-1	380248..381579	+	443	71893666	-	MHJ_0312	-	hypothetical protein
308	 33.33	0	382033..382269	+	78	71893667	-	MHJ_0313	-	hypothetical protein
309	 26.47	0	382692..384149	-	485	71893668	-	MHJ_0314	-	hypothetical protein
310	 22.88	-1	384154..384813	-	219	71893669	-	MHJ_0315	-	hypothetical protein
311	 30.68	0	385311..385574	+	87	71893670	-	MHJ_0316	-	hypothetical protein
312	 20.37	-2	385706..385975	-	89	71893671	-	MHJ_0317	-	hypothetical protein
313	 24.48	-1	386038..386466	-	142	71893672	-	MHJ_0318	-	hypothetical protein
314	 25.02	-1	386475..387917	-	480	71893673	-	MHJ_0319	-	hypothetical protein
315	 22.26	-1	388065..388967	-	300	71893674	-	MHJ_0320	-	hypothetical protein
316	 21.18	-1	389055..389984	-	309	71893675	-	MHJ_0321	-	hypothetical protein
317	 33.55	+1	389986..390894	-	302	71893676	-	MHJ_0322	-	hypothetical protein
318	 23.86	-1	391214..391477	+	87	71893677	-	MHJ_0323	-	hypothetical protein
319	 31.44	0	391532..392164	-	210	71893678	-	MHJ_0324	-	hypothetical protein
320	 29.02	0	392553..393641	+	362	71893679	-	MHJ_0325	-	hypothetical protein
321	 31.33	0	393711..394358	+	215	71893680	-	MHJ_0326	-	hypothetical protein
322	 25.54	0	394895..395356	-	153	71893681	-	MHJ_0327	-	hypothetical protein
323	 27.76	0	395837..396589	+	250	71893682	-	MHJ_0328	-	hypothetical protein
324	 26.40	0	396657..398315	-	552	71893683	-	MHJ_0329	-	putative transposase
325	 25.40	0	399163..400422	-	419	71893684	-	MHJ_0330	-	hypothetical protein
326	 21.50	-1	400637..401422	-	261	71893685	-	MHJ_0331	-	hypothetical protein
327	 27.37	0	402065..404461	-	798	71893686	-	MHJ_0332	-	hypothetical protein
328	 25.17	0	405169..407556	-	795	71893687	-	MHJ_0333	-	putative ABC transporter ATP-binding protein
329	 22.19	-1	407543..409399	-	618	71893688	-	MHJ_0334	-	hypothetical protein
330	 31.99	0	409435..410103	-	222	71893689	-	MHJ_0335	-	hypothetical protein
331	 31.36	0	411710..412723	-	337	71893690	-	MHJ_0337	-	hypothetical protein
332	 32.82	0	413306..413500	-	64	71893691	-	MHJ_0338	-	hypothetical protein
333	 26.98	0	413711..414025	+	104	71893692	-	MHJ_0339	-	hypothetical protein
334	 28.03	0	414028..414630	+	200	71893693	-	MHJ_0340	-	hypothetical protein
335	 22.78	-1	414651..415721	+	356	71893694	-	MHJ_0341	-	hypothetical protein
29.24	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.