IslandPathversion 1.0

IslandPath Analysis: Mycoplasma hyopneumoniae J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 4.17
Mycoplasma hyopneumoniae J, complete genome - 1..897405
665 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
184	 38.99	+2	209997..210845	-	282	71893543	rplB	MHJ_0187	-	50S ribosomal protein L2
185	 28.77	0	210968..211471	-	167	71893544	rplW	MHJ_0188	-	50S ribosomal protein L23
186	 31.88	0	211475..212095	-	206	71893545	rplD	MHJ_0189	-	50S ribosomal protein L4
187	 33.77	+1	212112..212804	-	230	71893546	rplC	MHJ_0190	-	50S ribosomal protein L3
188	 33.06	0	212806..213177	-	123	71893547	rpsJ	MHJ_0191	-	30S ribosomal protein S10
189	 25.81	0	213452..213637	+	61	71893548	-	MHJ_0192	-	hypothetical protein
190	 26.57	0	213712..214140	+	142	71893549	-	MHJ_0193	-	hypothetical protein
191	 31.23	0	214552..217830	+	1092	71893550	-	MHJ_0194	-	putative protein P97
192	 28.66	0	217851..220565	+	904	71893551	-	MHJ_0195	-	putative protein P102
193	 29.24	0	220882..221565	-	227	71893552	-	MHJ_0196	-	putative 26.3 kDa protein in cilium adhesin operon
194	 29.93	0	221649..224291	+	880	71893553	alaS	MHJ_0197	-	alanyl-tRNA synthetase
195	 29.26	0	224306..224698	+	130	71893554	-	MHJ_0198	-	hypothetical protein
196	 27.51	0	224704..225132	+	142	71893555	-	MHJ_0199	-	hypothetical protein
197	 31.89	0	225166..225720	+	184	71893556	pth	MHJ_0200	-	peptidyl-tRNA hydrolase
198	 23.81	-1	225731..226591	+	286	71893557	-	MHJ_0201	-	hypothetical protein
199	 36.87	+1	226628..228778	+	716	71893558	ftsH	MHJ_0202	-	cell division protein
200	 31.29	0	228897..230366	+	489	71893559	lysS	MHJ_0203	-	lysyl-tRNA synthetase
201	 31.29	0	230368..231198	+	276	71893560	-	MHJ_0204	-	HAD family hydrolase
202	 31.30	0	231187..232515	-	442	71893561	trmE	MHJ_0205	-	tRNA modification GTPase TrmE
203	 33.02	0	232559..234175	-	538	71893562	-	MHJ_0206	-	putative ABC transporter ATP-binding protein
204	 27.14	0	234333..235397	+	354	71893563	-	MHJ_0207	-	hypothetical protein
205	 30.06	0	235856..236956	+	366	71893564	oppB-1	MHJ_0208	-	oligopeptide ABC transporter system permease
206	 31.86	0	236974..237921	+	315	71893565	oppC-1	MHJ_0209	-	oligopeptide transport system permease protein
207	 32.66	0	238007..239335	+	442	71893566	oppD-1	MHJ_0210	-	oligopeptide ABC transporter ATP-binding protein
208	 28.62	0	239511..240656	+	381	71893567	oppF-1	MHJ_0211	-	oligopeptide ABC transporter ATP-binding protein
209	 29.74	0	240658..246786	+	2042	71893568	-	MHJ_0212	-	hypothetical protein
210	 31.91	0	246806..249475	+	889	71893569	-	MHJ_0213	-	putative lipoprotein
211	 23.79	-1	249566..250330	-	254	71893570	-	MHJ_0214	-	hypothetical protein
212	 31.19	0	251268..253409	-	713	71893571	nrdE	MHJ_0215	-	ribonucleotide-diphosphate reductase subunit alpha
213	 29.36	0	253486..253938	-	150	71893572	nrdI	MHJ_0216	-	ribonucleotide reductase stimulatory protein
214	 32.55	0	253940..254959	-	339	71893573	nrdF	MHJ_0217	-	ribonucleotide-diphosphate reductase subunit beta
215	 33.89	+1	255658..256914	-	418	71893574	glyA	MHJ_0218	-	serine hydroxymethyltransferase
216	 35.03	+1	257420..258889	+	489	71893575	-	MHJ_0219	-	methylmalonate-semialdehyde dehydrogenase
217	 29.99	0	258889..259905	+	338	71893576	iolC	MHJ_0220	-	myo-inositol catabolism protein
218	 31.68	0	259910..260695	+	261	71893577	iolB	MHJ_0221	-	myo-inositol catabolism protein
219	 31.24	0	260703..261704	+	333	71893578	-	MHJ_0222	-	putative myo-inositol 2-dehydrogenase
220	 34.50	+1	261704..263674	+	656	71893579	iolD	MHJ_0223	-	myo-inositol catabolism protein
221	 31.66	0	263683..264576	+	297	71893580	iolE	MHJ_0224	-	myo-inositol catabolism protein
222	 32.20	0	264612..266117	+	501	71893581	mglA	MHJ_0225	-	ribose ABC transport ATP-binding protein
223	 30.51	0	266952..267944	+	330	71893582	-	MHJ_0226	-	putative ribose ABC transporter
224	 33.67	+1	267967..269172	+	401	71893583	rbsB	MHJ_0227	-	periplasmic sugar-binding proteins
225	 31.80	0	269195..270238	+	347	71893584	-	MHJ_0228	-	putative myo-inositol 2-dehydrogenase
226	 23.14	-1	270349..271407	-	352	71893585	-	MHJ_0229	-	hypothetical protein
227	 29.23	0	271411..272214	-	267	71893586	-	MHJ_0230	-	hypothetical protein
228	 24.59	-1	272223..272771	-	182	71893587	-	MHJ_0231	-	hypothetical protein
229	 22.90	-1	272782..273711	-	309	71893588	-	MHJ_0232	-	hypothetical protein
230	 28.68	0	274230..276827	+	865	71893589	secD	MHJ_0233	-	bifunctional preprotein translocase subunit SecD/SecF
231	 26.34	0	276916..278202	+	428	71893590	hisS	MHJ_0234	-	histidyl-tRNA synthetase
232	 32.50	0	278213..279898	+	561	71893591	aspS	MHJ_0235	-	aspartyl-tRNA synthetase
233	 26.10	0	279973..280428	+	151	71893592	-	MHJ_0236	-	hypothetical protein
234	 30.40	0	280568..280840	+	90	71893593	rpsT	MHJ_0237	-	30S ribosomal protein S20
235	 25.11	0	281004..284591	-	1195	71893594	-	MHJ_0238	-	hypothetical protein
236	 29.43	0	284636..287272	-	878	71893595	-	MHJ_0239	-	putative TRSE-like protein
237	 31.15	0	287311..289557	-	748	71893596	-	MHJ_0240	-	hypothetical protein
238	 27.82	0	289865..290644	-	259	71893597	smf	MHJ_0241	-	DNA processing protein SMF
239	 34.37	+1	290939..292294	+	451	71893598	eno	MHJ_0242	-	phosphopyruvate hydratase
240	 31.49	0	292303..293547	+	414	71893599	serS	MHJ_0243	-	seryl-tRNA synthetase
241	 29.65	0	293627..294196	+	189	71893600	-	MHJ_0244	-	hypothetical protein
242	 29.21	0	294199..294999	-	266	71893601	lip	MHJ_0245	-	triacylglycerol lipase
243	 27.45	0	295000..296001	-	333	71893602	lplA	MHJ_0246	-	lipoate-protein ligase A
244	 25.64	0	296015..296365	-	116	71893603	-	MHJ_0247	-	hypothetical protein
245	 26.58	0	296477..298624	+	715	71893604	dnaX	MHJ_0248	-	DNA polymerase III subunits gamma and tau
246	 22.88	-1	298662..298967	+	101	71893605	-	MHJ_0249	-	hypothetical protein
247	 28.72	0	298970..299554	+	194	71893606	recR	MHJ_0250	-	recombination protein RecR
248	 30.69	0	299551..300192	+	213	71893607	tmk	MHJ_0251	-	thymidylate kinase
249	 23.99	-1	300233..301045	+	270	71893608	-	MHJ_0252	-	DNA polymerase III subunit delta'
250	 25.29	0	301175..301783	+	202	71893609	-	MHJ_0253	-	hypothetical protein
251	 28.31	0	301816..302352	+	178	71893610	hpt	MHJ_0254	-	hypoxanthine-guanine phosphoribosyltransferase
252	 30.53	0	302382..303200	+	272	71893611	-	MHJ_0255	-	cobalt transporter ATP-binding subunit
253	 30.68	0	303173..304075	+	300	71893612	-	MHJ_0256	-	cobalt transporter ATP-binding subunit
254	 29.60	0	304065..305027	+	320	71893613	-	MHJ_0257	-	ABC transporter permease
255	 28.39	0	305028..307109	+	693	71893614	lig	MHJ_0258	-	DNA ligase
256	 29.14	0	307179..308132	+	317	71893615	-	MHJ_0259	-	hypothetical protein
257	 29.22	0	308129..310702	-	857	71893616	mgtA	MHJ_0260	-	cation-transporting P-type ATPase
258	 30.14	0	310834..311271	+	145	71893617	smpB	MHJ_0261	-	SsrA-binding protein
259	 29.67	0	311271..311897	+	208	71893618	-	MHJ_0262	-	putative nuclease, lipoprotein
260	 27.10	0	312028..315012	-	994	71893619	-	MHJ_0263	-	putative P102 - like
261	 24.74	-1	315111..318182	-	1023	71893620	-	MHJ_0264	-	putative P97 - like
262	 29.86	0	318698..319387	+	229	71893621	pheS	MHJ_0265	-	phenylalanyl-tRNA synthetase alpha chain
263	 28.09	0	319398..321554	+	718	71893622	pheT	MHJ_0266	-	phenylalanyl-tRNA synthetase subunit beta
264	 31.82	0	321613..321810	+	65	71893623	rpmF	MHJ_0267	-	50S ribosomal protein L32
265	 28.47	0	322434..323276	+	280	71893624	truB	MHJ_0268	-	tRNA pseudouridine synthase B
266	 29.81	0	323278..324099	+	273	71893625	-	MHJ_0269	-	hypothetical protein
267	 25.65	0	324092..324937	+	281	71893626	-	MHJ_0270	-	hypothetical protein
268	 27.72	0	324934..325752	-	272	71893627	-	MHJ_0271	-	putative transcriptional regulator
269	 31.90	0	326279..327883	+	534	161611221	pyrG	MHJ_0272	-	CTP synthetase
270	 26.46	0	327895..328461	-	188	71893629	pgsA	MHJ_0273	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
271	 20.99	-1	328464..329111	-	215	71893630	-	MHJ_0274	-	hypothetical protein
272	 30.68	0	329142..331064	-	640	71893631	topA	MHJ_0275	-	DNA topoisomerase I
273	 29.78	0	331057..331422	-	121	71893632	rplS	MHJ_0276	-	50S ribosomal protein L19
274	 30.70	0	331476..332159	-	227	71893633	trmD	MHJ_0277	-	tRNA (guanine-N1)-methyltransferase
275	 34.46	+1	332181..332447	-	88	71893634	rpsP	MHJ_0278	-	30S ribosomal protein S16
276	 28.70	0	332735..333187	-	150	71893635	-	MHJ_0279	-	hypothetical protein
277	 26.53	0	333347..335404	-	685	71893636	-	MHJ_0280	-	putative ABC transporter ATP-binding protein
278	 21.73	-1	335642..337528	-	628	71893637	-	MHJ_0281	-	hypothetical protein
279	 33.33	0	337532..338071	-	179	71893638	-	MHJ_0282	-	hypothetical protein
280	 25.67	0	338677..339198	+	173	71893639	-	MHJ_0283	-	hypothetical protein
281	 29.89	0	339318..340421	-	367	71893640	ychF	MHJ_0284	-	translation-associated GTPase
282	 34.09	+1	340431..340694	-	87	161611220	rpsR	MHJ_0285	-	30S ribosomal protein S18
283	 34.22	+1	340712..341272	-	186	71893642	ssb	MHJ_0286	-	single-strand binding protein
29.24	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.