IslandPathversion 1.0

IslandPath Analysis: Mycoplasma hyopneumoniae J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 4.17
Mycoplasma hyopneumoniae J, complete genome - 1..897405
665 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
118	 25.64	0	158740..158934	-	64	161611223	rpmI	MHJ_0120	-	50S ribosomal protein L35
119	 28.77	0	158927..159583	-	218	71893478	infC	MHJ_0121	-	translation initiation factor IF-3
120	 33.68	+1	159810..161237	-	475	71893479	pyk	MHJ_0122	-	pyruvate kinase
121	 26.37	0	161342..162145	-	267	71893480	-	MHJ_0123	-	hypothetical protein
122	 35.71	+1	162190..162483	+	97	71893481	-	MHJ_0124	-	hypothetical protein
123	 35.29	+1	162512..163582	-	356	71893482	-	MHJ_0125	-	putative aminopeptidase
124	 27.80	0	163634..164302	-	222	71893483	ung	MHJ_0126	-	uracil-DNA glycosylase
125	 30.00	0	164443..164742	+	99	71893484	rplU	MHJ_0127	-	50S ribosomal protein L21
126	 38.43	+2	164751..165005	+	84	71893485	rpmA	MHJ_0128	-	50S ribosomal protein L27
127	 26.32	0	165262..166059	-	265	71893486	lip2	MHJ_0129	-	lipase-esterase
128	 29.26	0	166362..167441	+	359	71893487	-	MHJ_0131	-	hypothetical protein
129	 31.04	0	167674..169113	+	479	71893488	-	MHJ_0132	-	putative hexosephosphate transport protein
130	 34.81	+1	169238..170185	+	315	71893489	ldh	MHJ_0133	-	L-lactate dehydrogenase
131	 30.79	0	170434..173385	+	983	71893490	-	MHJ_0134	-	hypothetical protein
132	 34.44	+1	173453..174538	+	361	71893491	prfA	MHJ_0135	-	peptide chain release factor 1
133	 28.55	0	174531..175241	+	236	71893492	hemK	MHJ_0136	-	protoporphirogen oxidase
134	 30.06	0	175299..176705	+	468	71893493	gltX	MHJ_0137	-	glutamyl-tRNA synthetase
135	 22.47	-1	176720..177115	+	131	71893494	-	MHJ_0138	-	hypothetical protein
136	 30.16	0	177192..177632	+	146	71893495	-	MHJ_0139	-	tRNA/rRNA methyltransferase
137	 25.20	0	177628..178377	+	249	71893496	-	MHJ_0140	-	putative tRNA/rRNA methyltransferase
138	 25.67	0	178523..179122	+	199	71893497	-	MHJ_0141	-	putative chromate transport protein
139	 28.11	0	179106..179756	+	216	71893498	-	MHJ_0142	-	putative chromate transport protein
140	 28.17	0	179766..180578	+	270	71893499	-	MHJ_0143	-	hypothetical protein
141	 27.59	0	180594..181829	+	411	71893500	-	MHJ_0144	-	hypothetical protein
142	 30.65	0	182043..183422	+	459	71893501	tig	MHJ_0145	-	trigger factor
143	 25.24	0	183472..183990	-	172	71893502	-	MHJ_0146	-	hypothetical protein
144	 26.13	0	184003..184641	-	212	71893503	rpe	MHJ_0147	-	ribulose-phosphate 3-epimerase
145	 28.21	0	184634..185491	-	285	71893504	-	MHJ_0148	-	hypothetical protein
146	 27.10	0	185492..186085	-	197	71893505	gmk	MHJ_0149	-	guanylate kinase
147	 29.06	0	186066..186626	-	186	71893506	-	MHJ_0150	-	putative DNA methylase
148	 23.64	-1	186653..187333	-	226	71893507	-	MHJ_0151	-	hypothetical protein
149	 29.25	0	187813..188694	-	293	71893508	era	MHJ_0152	-	GTP-binding protein Era
150	 32.07	0	188701..189096	-	131	71893509	cdd	MHJ_0153	-	cytidine deaminase
151	 26.05	0	189096..189548	-	150	71893510	-	MHJ_0154	-	hypothetical protein
152	 20.34	-2	189566..189919	-	117	71893511	-	MHJ_0155	-	hypothetical protein
153	 24.61	-1	189921..191960	-	679	71893512	-	MHJ_0156	-	putative ABC transporter ATP-binding and permease protein
154	 31.91	0	192038..193234	+	398	71893513	deoB	MHJ_0157	-	phosphopentomutase
155	 22.50	-1	193562..194161	+	199	71893514	-	MHJ_0158	-	hypothetical protein
156	 27.59	0	194595..195308	+	237	71893515	tlyA	MHJ_0159	-	haemolysin
157	 27.23	0	195301..196446	+	381	71893516	nifS	MHJ_0160	-	nitrogen fixation protein
158	 23.61	-1	196436..196867	+	143	71893517	-	MHJ_0161	-	hypothetical protein
159	 29.13	0	196857..197570	+	237	71893518	rluB	MHJ_0162	-	ribosomal large subunit pseudouridine synthase B
160	 38.29	+2	197779..198141	-	120	71893519	rplQ	MHJ_0163	-	50S ribosomal protein L17
161	 32.53	0	198144..199142	-	332	71893520	rpoA	MHJ_0164	-	DNA-directed RNA polymerase subunit alpha
162	 39.51	+2	199149..199553	-	134	71893521	rpsK	MHJ_0165	-	30S ribosomal protein S11
163	 34.54	+1	199556..199969	-	137	71893522	rpsM	MHJ_0166	-	30S ribosomal protein S13
164	 26.32	0	200115..200228	-	37	71893523	rpmJ	MHJ_0167	-	50S ribosomal protein L36
165	 31.05	0	200273..200491	-	72	71893524	infA	MHJ_0168	-	translation initiation factor IF-1
166	 33.33	0	200501..201253	-	250	71893525	map	MHJ_0169	-	methionine aminopeptidase
167	 28.95	0	201244..201882	-	212	71893526	adk	MHJ_0170	-	adenylate kinase
168	 34.25	+1	201928..203349	-	473	71893527	secY	MHJ_0171	-	preprotein translocase subunit SecY
169	 40.64	+2	203349..203786	-	145	71893528	rplO	MHJ_0172	-	50S ribosomal protein L15
170	 37.17	+1	203905..204555	-	216	71893529	rpsE	MHJ_0173	-	30S ribosomal protein S5
171	 31.17	0	204557..204925	-	122	71893530	rplR	MHJ_0174	-	50S ribosomal protein L18
172	 32.96	0	204925..205464	-	179	71893531	rplF	MHJ_0175	-	50S ribosomal protein L6
173	 31.31	0	205471..205866	-	131	71893532	rpsH	MHJ_0176	-	30S ribosomal protein S8
174	 40.86	+2	205872..206057	-	61	71893533	rpsN	MHJ_0177	-	30S ribosomal protein S14
175	 34.81	+1	206104..206646	-	180	71893534	rplE	MHJ_0178	-	50S ribosomal protein L5
176	 34.57	+1	206653..206976	-	107	71893535	rplX	MHJ_0179	-	50S ribosomal protein L24
177	 38.21	+2	206981..207349	-	122	71893536	rplN	MHJ_0180	-	50S ribosomal protein L14
178	 34.80	+1	207351..207623	-	90	71893537	rpsQ	MHJ_0181	-	30S ribosomal protein S17
179	 29.81	0	207631..207999	-	122	71893538	rpmC	MHJ_0182	-	50S ribosomal protein L29
180	 42.34	+2	208004..208414	-	136	71893539	rplP	MHJ_0183	-	50S ribosomal protein L16
181	 35.23	+1	208417..209100	-	227	161611222	rpsC	MHJ_0184	-	30S ribosomal protein S3
182	 39.42	+2	209100..209690	-	196	71893541	rplV	MHJ_0185	-	50S ribosomal protein L22
183	 34.80	+1	209725..209997	-	90	71893542	rpsS	MHJ_0186	-	30S ribosomal protein S19
184	 38.99	+2	209997..210845	-	282	71893543	rplB	MHJ_0187	-	50S ribosomal protein L2
185	 28.77	0	210968..211471	-	167	71893544	rplW	MHJ_0188	-	50S ribosomal protein L23
186	 31.88	0	211475..212095	-	206	71893545	rplD	MHJ_0189	-	50S ribosomal protein L4
187	 33.77	+1	212112..212804	-	230	71893546	rplC	MHJ_0190	-	50S ribosomal protein L3
188	 33.06	0	212806..213177	-	123	71893547	rpsJ	MHJ_0191	-	30S ribosomal protein S10
189	 25.81	0	213452..213637	+	61	71893548	-	MHJ_0192	-	hypothetical protein
190	 26.57	0	213712..214140	+	142	71893549	-	MHJ_0193	-	hypothetical protein
191	 31.23	0	214552..217830	+	1092	71893550	-	MHJ_0194	-	putative protein P97
192	 28.66	0	217851..220565	+	904	71893551	-	MHJ_0195	-	putative protein P102
193	 29.24	0	220882..221565	-	227	71893552	-	MHJ_0196	-	putative 26.3 kDa protein in cilium adhesin operon
194	 29.93	0	221649..224291	+	880	71893553	alaS	MHJ_0197	-	alanyl-tRNA synthetase
195	 29.26	0	224306..224698	+	130	71893554	-	MHJ_0198	-	hypothetical protein
196	 27.51	0	224704..225132	+	142	71893555	-	MHJ_0199	-	hypothetical protein
197	 31.89	0	225166..225720	+	184	71893556	pth	MHJ_0200	-	peptidyl-tRNA hydrolase
198	 23.81	-1	225731..226591	+	286	71893557	-	MHJ_0201	-	hypothetical protein
199	 36.87	+1	226628..228778	+	716	71893558	ftsH	MHJ_0202	-	cell division protein
200	 31.29	0	228897..230366	+	489	71893559	lysS	MHJ_0203	-	lysyl-tRNA synthetase
201	 31.29	0	230368..231198	+	276	71893560	-	MHJ_0204	-	HAD family hydrolase
202	 31.30	0	231187..232515	-	442	71893561	trmE	MHJ_0205	-	tRNA modification GTPase TrmE
203	 33.02	0	232559..234175	-	538	71893562	-	MHJ_0206	-	putative ABC transporter ATP-binding protein
204	 27.14	0	234333..235397	+	354	71893563	-	MHJ_0207	-	hypothetical protein
205	 30.06	0	235856..236956	+	366	71893564	oppB-1	MHJ_0208	-	oligopeptide ABC transporter system permease
206	 31.86	0	236974..237921	+	315	71893565	oppC-1	MHJ_0209	-	oligopeptide transport system permease protein
207	 32.66	0	238007..239335	+	442	71893566	oppD-1	MHJ_0210	-	oligopeptide ABC transporter ATP-binding protein
208	 28.62	0	239511..240656	+	381	71893567	oppF-1	MHJ_0211	-	oligopeptide ABC transporter ATP-binding protein
209	 29.74	0	240658..246786	+	2042	71893568	-	MHJ_0212	-	hypothetical protein
210	 31.91	0	246806..249475	+	889	71893569	-	MHJ_0213	-	putative lipoprotein
211	 23.79	-1	249566..250330	-	254	71893570	-	MHJ_0214	-	hypothetical protein
212	 31.19	0	251268..253409	-	713	71893571	nrdE	MHJ_0215	-	ribonucleotide-diphosphate reductase subunit alpha
213	 29.36	0	253486..253938	-	150	71893572	nrdI	MHJ_0216	-	ribonucleotide reductase stimulatory protein
214	 32.55	0	253940..254959	-	339	71893573	nrdF	MHJ_0217	-	ribonucleotide-diphosphate reductase subunit beta
215	 33.89	+1	255658..256914	-	418	71893574	glyA	MHJ_0218	-	serine hydroxymethyltransferase
216	 35.03	+1	257420..258889	+	489	71893575	-	MHJ_0219	-	methylmalonate-semialdehyde dehydrogenase
217	 29.99	0	258889..259905	+	338	71893576	iolC	MHJ_0220	-	myo-inositol catabolism protein
29.24	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.