IslandPathversion 1.0

IslandPath Analysis: Mycoplasma hyopneumoniae J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 4.17
Mycoplasma hyopneumoniae J, complete genome - 1..897405
665 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
78	 33.12	0	96377..97759	+	460	71893437	nox	MHJ_0078	-	NADH oxidase
79	 32.48	0	97947..99230	-	427	71893438	deoA	MHJ_0079	-	thymidine phosphorylase
80	 32.62	0	99235..99933	-	232	71893439	deoD	MHJ_0080	-	purine-nucleoside phosphorylase
81	 21.44	-1	100022..100492	-	156	71893440	-	MHJ_0081	-	hypothetical protein
82	 34.45	+1	100649..103600	-	983	161611224	secA	MHJ_0082	-	preprotein translocase subunit SecA
83	 26.50	0	104867..105685	+	272	71893442	rbgA	MHJ_0083	-	ribosomal biogenesis GTPase
84	 25.26	0	105969..107405	-	478	71893443	-	MHJ_0084	-	hypothetical protein
85	 28.24	0	107443..109581	-	712	71893444	-	MHJ_0085	-	putative subtilisin-like serine protease
86	 29.71	0	109801..110076	+	91	71893445	-	MHJ_0086	-	hypothetical protein
87	 28.86	0	110173..111066	+	297	71893446	-	MHJ_0087	-	hypothetical protein
88	 33.01	0	111446..114259	-	937	71893447	uvrA	MHJ_0088	-	excinuclease ABC subunit A
89	 29.85	0	114282..116720	-	812	71893448	-	MHJ_0089	-	hypothetical protein
90	 26.67	0	116928..117287	-	119	71893449	-	MHJ_0090	-	hypothetical protein
91	 26.64	0	117398..118981	+	527	71893450	-	MHJ_0091	-	hypothetical protein
92	 21.77	-1	119004..119591	-	195	71893451	-	MHJ_0092	-	hypothetical protein
93	 30.10	0	119960..120454	+	164	71893452	tpx	MHJ_0093	-	thiol peroxidase
94	 30.03	0	121028..121966	+	312	71893453	lgt	MHJ_0094	-	prolipoprotein diacylglyceryl transferase
95	 35.40	+1	122125..123042	+	305	71893454	trxB	MHJ_0095	-	thioredoxin reductase
96	 28.88	0	123067..126501	+	1144	71893455	-	MHJ_0096	-	putative outer membrane protein - P95
97	 28.09	0	126600..129440	+	946	71893456	-	MHJ_0097	-	hypothetical protein
98	 29.76	0	129445..131628	-	727	71893457	clpB	MHJ_0098	-	ATP-dependent protease binding protein
99	 31.14	0	131706..132434	+	242	71893458	tpiA	MHJ_0099	-	triosephosphate isomerase
100	 25.47	0	132553..132819	+	88	71893459	rpsO	MHJ_0100	-	30S ribosomal protein S15
101	 24.83	-1	136543..137142	-	199	71893460	-	MHJ_0103	-	hypothetical protein
102	 29.19	0	137369..140218	-	949	71893461	-	MHJ_0104	-	putative protein P102
103	 31.09	0	140239..143355	-	1038	71893462	-	MHJ_0105	-	putative protein P97
104	 35.00	+1	143633..145552	-	639	71893463	gyrB	MHJ_0106	-	DNA gyrase subunit B
105	 34.26	+1	146026..146994	-	322	71893464	pfkA	MHJ_0107	-	6-phosphofructokinase
106	 23.12	-1	147439..148662	+	407	71893465	-	MHJ_0108	-	hypothetical protein
107	 28.93	0	148726..150336	+	536	71893466	-	MHJ_0109	-	putative amino acid permease
108	 33.92	+1	150355..150864	+	169	71893467	apt	MHJ_0110	-	adenine phosphoribosyltransferase
109	 37.24	+1	151054..152178	+	374	71893468	pdhA	MHJ_0111	-	pyruvate dehydrogenase E1-alpha subunit
110	 39.10	+2	152178..153182	+	334	71893469	pdhB	MHJ_0112	-	pyruvate dehydrogenase
111	 26.21	0	154016..154843	+	275	71893470	-	MHJ_0113	-	hypothetical protein
112	 24.53	-1	154852..155601	+	249	71893471	-	MHJ_0114	-	hypothetical protein
113	 28.83	0	155691..156134	-	147	71893472	-	MHJ_0115	-	hypothetical protein
114	 28.06	0	156385..157257	+	290	71893473	-	MHJ_0116	-	hypothetical protein
115	 24.47	-1	157262..157927	+	221	71893474	-	MHJ_0117	-	hypothetical protein
116	 32.82	0	158092..158286	-	64	71893475	rpmB	MHJ_0118	-	50S ribosomal protein L28
117	 35.88	+1	158342..158695	-	117	71893476	rplT	MHJ_0119	-	50S ribosomal protein L20
118	 25.64	0	158740..158934	-	64	161611223	rpmI	MHJ_0120	-	50S ribosomal protein L35
119	 28.77	0	158927..159583	-	218	71893478	infC	MHJ_0121	-	translation initiation factor IF-3
120	 33.68	+1	159810..161237	-	475	71893479	pyk	MHJ_0122	-	pyruvate kinase
121	 26.37	0	161342..162145	-	267	71893480	-	MHJ_0123	-	hypothetical protein
122	 35.71	+1	162190..162483	+	97	71893481	-	MHJ_0124	-	hypothetical protein
123	 35.29	+1	162512..163582	-	356	71893482	-	MHJ_0125	-	putative aminopeptidase
124	 27.80	0	163634..164302	-	222	71893483	ung	MHJ_0126	-	uracil-DNA glycosylase
125	 30.00	0	164443..164742	+	99	71893484	rplU	MHJ_0127	-	50S ribosomal protein L21
126	 38.43	+2	164751..165005	+	84	71893485	rpmA	MHJ_0128	-	50S ribosomal protein L27
127	 26.32	0	165262..166059	-	265	71893486	lip2	MHJ_0129	-	lipase-esterase
128	 29.26	0	166362..167441	+	359	71893487	-	MHJ_0131	-	hypothetical protein
129	 31.04	0	167674..169113	+	479	71893488	-	MHJ_0132	-	putative hexosephosphate transport protein
130	 34.81	+1	169238..170185	+	315	71893489	ldh	MHJ_0133	-	L-lactate dehydrogenase
131	 30.79	0	170434..173385	+	983	71893490	-	MHJ_0134	-	hypothetical protein
132	 34.44	+1	173453..174538	+	361	71893491	prfA	MHJ_0135	-	peptide chain release factor 1
133	 28.55	0	174531..175241	+	236	71893492	hemK	MHJ_0136	-	protoporphirogen oxidase
134	 30.06	0	175299..176705	+	468	71893493	gltX	MHJ_0137	-	glutamyl-tRNA synthetase
135	 22.47	-1	176720..177115	+	131	71893494	-	MHJ_0138	-	hypothetical protein
136	 30.16	0	177192..177632	+	146	71893495	-	MHJ_0139	-	tRNA/rRNA methyltransferase
137	 25.20	0	177628..178377	+	249	71893496	-	MHJ_0140	-	putative tRNA/rRNA methyltransferase
138	 25.67	0	178523..179122	+	199	71893497	-	MHJ_0141	-	putative chromate transport protein
139	 28.11	0	179106..179756	+	216	71893498	-	MHJ_0142	-	putative chromate transport protein
140	 28.17	0	179766..180578	+	270	71893499	-	MHJ_0143	-	hypothetical protein
141	 27.59	0	180594..181829	+	411	71893500	-	MHJ_0144	-	hypothetical protein
142	 30.65	0	182043..183422	+	459	71893501	tig	MHJ_0145	-	trigger factor
143	 25.24	0	183472..183990	-	172	71893502	-	MHJ_0146	-	hypothetical protein
144	 26.13	0	184003..184641	-	212	71893503	rpe	MHJ_0147	-	ribulose-phosphate 3-epimerase
145	 28.21	0	184634..185491	-	285	71893504	-	MHJ_0148	-	hypothetical protein
146	 27.10	0	185492..186085	-	197	71893505	gmk	MHJ_0149	-	guanylate kinase
147	 29.06	0	186066..186626	-	186	71893506	-	MHJ_0150	-	putative DNA methylase
148	 23.64	-1	186653..187333	-	226	71893507	-	MHJ_0151	-	hypothetical protein
149	 29.25	0	187813..188694	-	293	71893508	era	MHJ_0152	-	GTP-binding protein Era
150	 32.07	0	188701..189096	-	131	71893509	cdd	MHJ_0153	-	cytidine deaminase
151	 26.05	0	189096..189548	-	150	71893510	-	MHJ_0154	-	hypothetical protein
152	 20.34	-2	189566..189919	-	117	71893511	-	MHJ_0155	-	hypothetical protein
153	 24.61	-1	189921..191960	-	679	71893512	-	MHJ_0156	-	putative ABC transporter ATP-binding and permease protein
154	 31.91	0	192038..193234	+	398	71893513	deoB	MHJ_0157	-	phosphopentomutase
155	 22.50	-1	193562..194161	+	199	71893514	-	MHJ_0158	-	hypothetical protein
156	 27.59	0	194595..195308	+	237	71893515	tlyA	MHJ_0159	-	haemolysin
157	 27.23	0	195301..196446	+	381	71893516	nifS	MHJ_0160	-	nitrogen fixation protein
158	 23.61	-1	196436..196867	+	143	71893517	-	MHJ_0161	-	hypothetical protein
159	 29.13	0	196857..197570	+	237	71893518	rluB	MHJ_0162	-	ribosomal large subunit pseudouridine synthase B
160	 38.29	+2	197779..198141	-	120	71893519	rplQ	MHJ_0163	-	50S ribosomal protein L17
161	 32.53	0	198144..199142	-	332	71893520	rpoA	MHJ_0164	-	DNA-directed RNA polymerase subunit alpha
162	 39.51	+2	199149..199553	-	134	71893521	rpsK	MHJ_0165	-	30S ribosomal protein S11
163	 34.54	+1	199556..199969	-	137	71893522	rpsM	MHJ_0166	-	30S ribosomal protein S13
164	 26.32	0	200115..200228	-	37	71893523	rpmJ	MHJ_0167	-	50S ribosomal protein L36
165	 31.05	0	200273..200491	-	72	71893524	infA	MHJ_0168	-	translation initiation factor IF-1
166	 33.33	0	200501..201253	-	250	71893525	map	MHJ_0169	-	methionine aminopeptidase
167	 28.95	0	201244..201882	-	212	71893526	adk	MHJ_0170	-	adenylate kinase
168	 34.25	+1	201928..203349	-	473	71893527	secY	MHJ_0171	-	preprotein translocase subunit SecY
169	 40.64	+2	203349..203786	-	145	71893528	rplO	MHJ_0172	-	50S ribosomal protein L15
170	 37.17	+1	203905..204555	-	216	71893529	rpsE	MHJ_0173	-	30S ribosomal protein S5
171	 31.17	0	204557..204925	-	122	71893530	rplR	MHJ_0174	-	50S ribosomal protein L18
172	 32.96	0	204925..205464	-	179	71893531	rplF	MHJ_0175	-	50S ribosomal protein L6
173	 31.31	0	205471..205866	-	131	71893532	rpsH	MHJ_0176	-	30S ribosomal protein S8
174	 40.86	+2	205872..206057	-	61	71893533	rpsN	MHJ_0177	-	30S ribosomal protein S14
175	 34.81	+1	206104..206646	-	180	71893534	rplE	MHJ_0178	-	50S ribosomal protein L5
176	 34.57	+1	206653..206976	-	107	71893535	rplX	MHJ_0179	-	50S ribosomal protein L24
177	 38.21	+2	206981..207349	-	122	71893536	rplN	MHJ_0180	-	50S ribosomal protein L14
29.24	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.