IslandPathversion 1.0

IslandPath Analysis: Mycoplasma genitalium G37



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.58 STD DEV: 3.61
Mycoplasma genitalium G37, complete genome - 1..580076
477 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
379	 30.23	0	466410..468083	-	557	12045230	-	MG_369	-	DAK2 domain-containing protein
380	 26.75	-1	468152..469123	-	323	12045231	-	MG_370	-	RluA family pseudouridine synthase
381	 31.28	0	469110..470084	-	324	12045232	-	MG_371	-	DHH family protein
382	 27.20	-1	470077..471234	-	385	12045233	guaA	MG_372	-	thiamine biosynthesis/tRNA modification protein ThiI
383	 27.78	-1	471221..472066	-	281	12045234	-	MG_373	-	hypothetical protein
384	 26.30	-1	472067..472891	-	274	12045235	-	MG_374	-	hypothetical protein
385	 28.44	0	472884..474578	-	564	12045236	thrS	MG_375	-	threonyl-tRNA synthetase
386	 29.84	0	474578..474892	-	104	12045237	-	MG_376	-	hypothetical protein
387	 27.84	-1	474898..475479	-	193	12045238	-	MG_377	-	hypothetical protein
388	 26.89	-1	475526..477139	-	537	12045239	argS	MG_378	-	arginyl-tRNA synthetase
389	 29.36	0	477168..479006	+	612	12045240	gidA	MG_379	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
390	 24.01	-2	478999..479577	+	192	12045241	gidB	MG_380	-	methyltransferase GidB
391	 23.59	-2	479570..480226	+	218	12045242	-	MG_381	-	hypothetical protein
392	 29.75	0	480691..481332	+	213	12045243	udk	MG_382	-	uridine kinase
393	 29.85	0	481329..482075	-	248	12045244	-	MG_383	-	NH(3)-dependent NAD+ synthetase, putative
394	 30.26	0	482068..483369	-	433	12045245	obgE	MG_384	-	GTPase ObgE
395	 23.78	-2	483369..483818	-	149	12045246	-	MG_524	-	hypothetical protein
396	 27.71	-1	483989..484699	-	236	12045247	-	MG_385	-	glycerophosphoryl diester phosphodiesterase family protein
397	 32.30	0	484702..489552	-	1616	12045248	-	MG_386	-	P200 protein
398	 25.09	-1	489839..490711	-	290	12045249	era	MG_387	-	GTP-binding protein Era
399	 31.18	0	490699..491163	-	154	108885108	-	MG_388	-	hypothetical protein
400	 25.78	-1	491147..491530	-	127	12045251	-	MG_389	-	hypothetical protein
401	 28.04	0	491534..493516	-	660	12045252	-	MG_390	-	ABC transporter, ATP-binding/permease protein
402	 33.93	0	493624..494967	-	447	12045253	-	MG_391	-	leucyl aminopeptidase
403	 33.58	0	494984..496615	-	543	108885109	groEL	MG_392	-	chaperonin GroEL
404	 34.53	0	496628..496960	-	110	12045255	groES	MG_393	-	co-chaperonin GroES
405	 33.99	0	497086..498306	-	406	12045256	glyA	MG_394	-	serine hydroxymethyltransferase
406	 30.48	0	498316..499890	-	524	12045257	-	MG_395	-	putative lipoprotein
407	 33.33	0	500261..500719	-	152	12045258	-	MG_396	-	ribose-5-phosphate isomerase B
408	 25.46	-1	500720..502420	-	566	12045259	-	MG_397	-	hypothetical protein
409	 28.86	0	502422..502823	-	133	12045260	atpC	MG_398	-	F0F1 ATP synthase subunit epsilon
410	 34.38	0	502828..504258	-	476	12045261	atpD	MG_399	-	F0F1 ATP synthase subunit beta
411	 29.05	0	504260..505099	-	279	12045262	atpG	MG_400	-	F0F1 ATP synthase subunit gamma
412	 32.31	0	505099..506655	-	518	12045263	atpA	MG_401	-	F0F1 ATP synthase subunit alpha
413	 25.42	-1	506671..507201	-	176	12045264	atpH	MG_402	-	F0F1 ATP synthase subunit delta
414	 28.71	0	507194..507820	-	208	12045265	atpF	MG_403	-	F0F1 ATP synthase subunit B
415	 34.30	0	507823..508131	-	102	12045266	atpE	MG_404	-	F0F1 ATP synthase subunit C
416	 29.92	0	508134..509012	-	292	12045267	atpB	MG_405	-	F0F1 ATP synthase subunit A
417	 25.79	-1	508978..509454	-	158	108885110	-	MG_406	-	hypothetical protein
418	 32.61	0	509460..510836	-	458	12045269	eno	MG_407	-	phosphopyruvate hydratase
419	 27.85	-1	510903..511376	+	157	12045270	pmsR	MG_408	-	methionine sulfoxide reductase A
420	 26.25	-1	511373..512050	-	225	12045271	-	MG_409	-	phosphate transport system regulatory protein PhoU, putative
421	 29.19	0	512053..513042	-	329	12045272	pstB	MG_410	-	phosphate ABC transporter, ATP-binding protein
422	 27.63	-1	513027..514991	-	654	12045273	pstA	MG_411	-	phosphate ABC transporter, permease protein PstA
423	 28.57	0	514991..516124	-	377	12045274	-	MG_412	-	phosphate ABC transporter, substrate-binding protein
424	 25.68	-1	516245..519355	-	1036	12045275	-	MG_414	-	hypothetical protein
425	 22.66	-2	519420..521414	-	664	108885111	-	MG_525	-	hypothetical protein
426	 32.33	0	521470..521868	-	132	12045277	rpsI	MG_417	-	30S ribosomal protein S9
427	 30.39	0	521874..522314	-	146	12045278	rplM	MG_418	-	50S ribosomal protein L13
428	 26.98	-1	522352..524145	-	597	108885112	-	MG_419	-	DNA polymerase III subunits gamma and tau
429	 30.86	0	524151..527015	-	954	12045281	uvrA	MG_421	-	excinuclease ABC subunit A
430	 24.00	-2	526987..529494	-	835	12045282	-	MG_422	-	hypothetical protein
431	 29.60	0	529532..531217	-	561	12045283	-	MG_423	-	hypothetical protein
432	 30.27	0	531220..531480	-	86	12045284	rpsO	MG_424	-	30S ribosomal protein S15
433	 30.37	0	531669..533018	+	449	12045285	deaD	MG_425	-	DEAD-box ATP dependent DNA helicase
434	 31.79	0	533041..533235	+	64	12045286	rpmB	MG_426	-	50S ribosomal protein L28
435	 35.45	+1	533271..533696	+	141	12045287	-	MG_427	-	OsmC-like protein
436	 27.71	-1	533807..534322	+	171	12045288	-	MG_428	-	LuxR regulatory protein, putative
437	 30.02	0	534319..536037	-	572	12045289	ptsI	MG_429	-	phosphoenolpyruvate-protein phosphotransferase
438	 30.91	0	536041..537564	-	507	108885113	pgm	MG_430	-	phosphoglyceromutase
439	 30.48	0	537557..538291	-	244	12045291	tpiA	MG_431	-	triosephosphate isomerase
440	 29.07	0	538351..539547	-	398	12045292	-	MG_432	-	hypothetical protein
441	 27.20	-1	539633..540529	+	298	12045293	tsf	MG_433	-	elongation factor Ts
442	 30.33	0	540510..541241	+	243	12045294	pyrH	MG_434	-	uridylate kinase
443	 27.72	-1	541241..541792	+	183	12045295	frr	MG_435	-	ribosome recycling factor
444	 30.07	0	541793..542986	+	397	108885114	-	MG_437	-	phosphatidate cytidylyltransferase
445	 30.38	0	543006..544157	+	383	12045297	-	MG_438	-	type I restriction modification DNA specificity domain-containing protein
446	 28.94	0	544562..545380	-	272	12045298	-	MG_439	-	putative lipoprotein
447	 29.47	0	545380..546156	-	258	12045299	-	MG_440	-	putative lipoprotein
448	 22.14	-2	546299..546709	-	136	12045300	-	MG_441	-	hypothetical protein
449	 27.55	-1	546880..547692	-	270	12045301	rbgA	MG_442	-	ribosomal biogenesis GTPase
450	 28.54	0	547664..548851	-	395	12045302	-	MG_443	-	hypothetical protein
451	 32.22	0	548867..549226	-	119	12045303	rplS	MG_444	-	50S ribosomal protein L19
452	 28.30	0	549210..549905	-	231	12045304	trmD	MG_445	-	tRNA (guanine-N1)-methyltransferase
453	 33.68	0	549905..550192	-	95	108885115	rpsP	MG_446	-	30S ribosomal protein S16
454	 26.76	-1	550803..552446	-	547	12045306	-	MG_447	-	hypothetical protein
455	 32.67	0	552447..552899	-	150	12045307	-	MG_448	-	methionine sulfoxide reductase B
456	 30.93	0	553558..554430	-	290	108885116	-	MG_450	-	degV family protein
457	 39.32	+2	554430..555614	-	394	12045310	tuf	MG_451	-	elongation factor Tu
458	 26.46	-1	555667..556452	+	261	12045311	-	MG_452	-	hypothetical protein
459	 30.94	0	556437..557315	+	292	12045312	gtaB	MG_453	-	UTP-glucose-1-phosphate uridylyltransferase
460	 29.06	0	557305..557772	-	155	12045313	-	MG_454	-	OsmC-like protein
461	 27.29	-1	557759..558949	+	396	108885117	tyrS	MG_455	-	tyrosyl-tRNA synthetase
462	 27.46	-1	558939..559943	-	334	12045315	-	MG_456	-	hypothetical protein
463	 34.61	0	560496..562604	-	702	12045316	ftsH	MG_457	-	ATP-dependent metalloprotease FtsH
464	 30.68	0	562782..563309	-	175	12045317	hpt	MG_458	-	hypoxanthine phosphoribosyltransferase
465	 29.80	0	563311..563820	-	169	12045318	-	MG_459	-	hypothetical protein
466	 33.55	0	563993..564931	+	312	12045319	ldh	MG_460	-	L-lactate dehydrogenase/malate dehydrogenase
467	 27.86	-1	564928..566205	-	425	108885118	-	MG_461	-	HD domain-containing protein
468	 30.65	0	566186..567640	-	484	12045321	gltX	MG_462	-	glutamyl-tRNA synthetase
469	 28.21	0	567627..568406	-	259	12045322	ksgA	MG_463	-	dimethyladenosine transferase
470	 31.69	0	568399..569556	-	385	12045323	-	MG_464	-	putative inner membrane protein translocase component YidC
471	 31.27	0	569528..569914	-	128	12045324	rnpA	MG_465	-	ribonuclease P protein component
472	 40.82	+2	569883..570029	-	48	12045325	rpmH	MG_466	-	50S ribosomal protein L34
473	 30.77	0	570055..570990	-	311	12045326	-	MG_467	-	ABC transporter, ATP-binding protein
474	 30.92	0	570994..576345	-	1783	12045327	-	MG_468	-	ABC transporter, permease protein
475	 29.59	0	576351..577205	-	284	12045328	-	MG_526	-	ABC transporter, ATP-binding protein
476	 27.55	-1	577268..578581	-	437	12045329	dnaA	MG_469	-	chromosomal replication initiation protein
477	 29.88	0	579224..580033	-	269	12045330	soj	MG_470	-	CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
31.58	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.