IslandPath Analysis: Mycoplasma genitalium G37



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.58   STD DEV: 3.61
Mycoplasma genitalium G37, complete genome - 1..580076
477 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
331	 31.48	0	408793..408954	-	53	12045183	rpmG	MG_325	-	50S ribosomal protein L33
332	 30.41	0	408971..409858	-	295	12045184	-	MG_326	-	degV family protein
333	 29.86	0	409871..410677	-	268	12045185	-	MG_327	-	alpha/beta fold family hydrolase
334	 29.24	0	410664..412934	-	756	12045186	-	MG_328	-	hypothetical protein
335	 31.85	0	412973..414319	-	448	12045187	engA	MG_329	-	GTP-binding protein EngA
336	 30.58	0	414323..414976	-	217	12045188	cmk	MG_330	-	cytidylate kinase
337	 25.51	-1	414985..415623	-	212	12045189	-	MG_331	-	hypothetical protein
338	 30.42	0	415611..416330	-	239	12045190	-	MG_332	-	hypothetical protein
339	 30.47	0	416337..416930	-	197	13277519	-	MG_333	-	azoreductase
340	 28.64	0	416967..419480	-	837	12045191	valS	MG_334	-	valyl-tRNA synthetase
341	 27.26	-1	419470..420045	-	191	12045192	-	MG_335	-	GTPase EngB
342	 31.53	0	420053..420274	-	73	12045193	-	MG_516	-	hypothetical protein
343	 25.05	-1	420333..421358	+	341	12045194	-	MG_517	-	glycosyl transferase, group 2 family protein
344	 26.89	-1	421467..422693	+	408	12045195	nifS	MG_336	-	aminotransferase, class V
345	 23.26	-2	422697..423113	+	138	12045196	-	MG_337	-	hypothetical protein
346	 29.40	0	423100..426912	-	1270	108885104	-	MG_338	-	putative lipoprotein
347	 30.11	0	427090..428112	-	340	12045198	recA	MG_339	-	recombinase A
348	 34.67	0	430580..434458	-	1292	108885105	rpoC	MG_340	-	DNA-directed RNA polymerase subunit beta'
349	 34.56	0	434468..438640	-	1390	12045200	rpoB	MG_341	-	DNA-directed RNA polymerase subunit beta
350	 29.78	0	438730..439236	-	168	12045201	-	MG_342	-	NADPH-dependent FMN reductase domain-containing protein
351	 24.98	-1	439315..440355	-	346	12045202	-	MG_343	-	hypothetical protein
352	 27.74	-1	440359..441180	-	273	12045203	-	MG_344	-	alpha/beta fold family hydrolase
353	 27.19	-1	441191..443878	-	895	108885106	ileS	MG_345	-	isoleucyl-tRNA synthetase
354	 28.74	0	443922..444422	+	166	12045205	-	MG_346	-	RNA methyltransferase
355	 25.75	-1	444413..445045	+	210	12045206	-	MG_347	-	tRNA (guanine-N(7)-)-methyltransferase
356	 35.19	+1	445197..446165	-	322	12045207	-	MG_348	-	putative lipoprotein
357	 28.31	0	446576..447790	+	404	12045208	-	MG_349	-	hypothetical protein
358	 25.43	-1	447790..448725	+	311	12045209	-	MG_350	-	hypothetical protein
359	 27.56	-1	448943..449617	-	224	12045210	-	MG_521	-	hypothetical protein
360	 28.29	0	449665..450219	+	184	12045211	ppa	MG_351	-	inorganic pyrophosphatase
361	 29.34	0	450222..450722	+	166	12045212	-	MG_352	-	recombination protein U
362	 32.12	0	450719..451048	-	109	12045213	-	MG_353	-	DNA-binding protein HU, putative
363	 26.81	-1	451197..451610	+	137	12045214	-	MG_354	-	hypothetical protein
364	 31.10	0	451613..453757	-	714	12045215	clpB	MG_355	-	ATP-dependent Clp protease, ATPase subunit
365	 27.40	-1	453911..454753	-	280	12045216	-	MG_356	-	choline/ethanolamine kinase, putative
366	 29.53	0	454766..455947	-	393	12045217	ackA	MG_357	-	acetate kinase
367	 27.02	-1	456755..457372	+	205	108885107	ruvA	MG_358	-	Holliday junction DNA helicase motor protein
368	 29.11	0	457347..458270	+	307	12045219	ruvB	MG_359	-	Holliday junction DNA helicase B
369	 25.40	-1	458260..459495	-	411	12045220	-	MG_360	-	ImpB/MucB/SamB family protein
370	 30.06	0	459615..460103	+	162	12045221	rplJ	MG_361	-	50S ribosomal protein L10
371	 34.69	0	460126..460494	+	122	12045222	rplL	MG_362	-	50S ribosomal protein L7/L12
372	 39.08	+2	460497..460670	+	57	12045223	rpmF	MG_363	-	50S ribosomal protein L32
373	 24.34	-2	460685..460951	-	88	12045224	rpsT	MG_522	-	30S ribosomal protein S20
374	 29.33	0	461015..461689	+	224	12045225	-	MG_364	-	hypothetical protein
375	 27.99	0	461682..462617	+	311	12045226	fmt	MG_365	-	methionyl-tRNA formyltransferase
376	 23.00	-2	462619..464622	+	667	12045227	-	MG_366	-	hypothetical protein
377	 27.76	-1	464646..465434	-	262	12045228	rnc	MG_367	-	ribonuclease III
378	 29.89	0	465424..466410	-	328	12045229	plsX	MG_368	-	putative glycerol-3-phosphate acyltransferase PlsX
379	 30.23	0	466410..468083	-	557	12045230	-	MG_369	-	DAK2 domain-containing protein
380	 26.75	-1	468152..469123	-	323	12045231	-	MG_370	-	RluA family pseudouridine synthase
381	 31.28	0	469110..470084	-	324	12045232	-	MG_371	-	DHH family protein
382	 27.20	-1	470077..471234	-	385	12045233	guaA	MG_372	-	thiamine biosynthesis/tRNA modification protein ThiI
383	 27.78	-1	471221..472066	-	281	12045234	-	MG_373	-	hypothetical protein
384	 26.30	-1	472067..472891	-	274	12045235	-	MG_374	-	hypothetical protein
385	 28.44	0	472884..474578	-	564	12045236	thrS	MG_375	-	threonyl-tRNA synthetase
386	 29.84	0	474578..474892	-	104	12045237	-	MG_376	-	hypothetical protein
387	 27.84	-1	474898..475479	-	193	12045238	-	MG_377	-	hypothetical protein
388	 26.89	-1	475526..477139	-	537	12045239	argS	MG_378	-	arginyl-tRNA synthetase
389	 29.36	0	477168..479006	+	612	12045240	gidA	MG_379	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
390	 24.01	-2	478999..479577	+	192	12045241	gidB	MG_380	-	methyltransferase GidB
391	 23.59	-2	479570..480226	+	218	12045242	-	MG_381	-	hypothetical protein
392	 29.75	0	480691..481332	+	213	12045243	udk	MG_382	-	uridine kinase
393	 29.85	0	481329..482075	-	248	12045244	-	MG_383	-	NH(3)-dependent NAD+ synthetase, putative
394	 30.26	0	482068..483369	-	433	12045245	obgE	MG_384	-	GTPase ObgE
395	 23.78	-2	483369..483818	-	149	12045246	-	MG_524	-	hypothetical protein
396	 27.71	-1	483989..484699	-	236	12045247	-	MG_385	-	glycerophosphoryl diester phosphodiesterase family protein
397	 32.30	0	484702..489552	-	1616	12045248	-	MG_386	-	P200 protein
398	 25.09	-1	489839..490711	-	290	12045249	era	MG_387	-	GTP-binding protein Era
399	 31.18	0	490699..491163	-	154	108885108	-	MG_388	-	hypothetical protein
400	 25.78	-1	491147..491530	-	127	12045251	-	MG_389	-	hypothetical protein
401	 28.04	0	491534..493516	-	660	12045252	-	MG_390	-	ABC transporter, ATP-binding/permease protein
402	 33.93	0	493624..494967	-	447	12045253	-	MG_391	-	leucyl aminopeptidase
403	 33.58	0	494984..496615	-	543	108885109	groEL	MG_392	-	chaperonin GroEL
404	 34.53	0	496628..496960	-	110	12045255	groES	MG_393	-	co-chaperonin GroES
405	 33.99	0	497086..498306	-	406	12045256	glyA	MG_394	-	serine hydroxymethyltransferase
406	 30.48	0	498316..499890	-	524	12045257	-	MG_395	-	putative lipoprotein
407	 33.33	0	500261..500719	-	152	12045258	-	MG_396	-	ribose-5-phosphate isomerase B
408	 25.46	-1	500720..502420	-	566	12045259	-	MG_397	-	hypothetical protein
409	 28.86	0	502422..502823	-	133	12045260	atpC	MG_398	-	F0F1 ATP synthase subunit epsilon
410	 34.38	0	502828..504258	-	476	12045261	atpD	MG_399	-	F0F1 ATP synthase subunit beta
411	 29.05	0	504260..505099	-	279	12045262	atpG	MG_400	-	F0F1 ATP synthase subunit gamma
412	 32.31	0	505099..506655	-	518	12045263	atpA	MG_401	-	F0F1 ATP synthase subunit alpha
413	 25.42	-1	506671..507201	-	176	12045264	atpH	MG_402	-	F0F1 ATP synthase subunit delta
414	 28.71	0	507194..507820	-	208	12045265	atpF	MG_403	-	F0F1 ATP synthase subunit B
415	 34.30	0	507823..508131	-	102	12045266	atpE	MG_404	-	F0F1 ATP synthase subunit C
416	 29.92	0	508134..509012	-	292	12045267	atpB	MG_405	-	F0F1 ATP synthase subunit A
417	 25.79	-1	508978..509454	-	158	108885110	-	MG_406	-	hypothetical protein
418	 32.61	0	509460..510836	-	458	12045269	eno	MG_407	-	phosphopyruvate hydratase
419	 27.85	-1	510903..511376	+	157	12045270	pmsR	MG_408	-	methionine sulfoxide reductase A
420	 26.25	-1	511373..512050	-	225	12045271	-	MG_409	-	phosphate transport system regulatory protein PhoU, putative
421	 29.19	0	512053..513042	-	329	12045272	pstB	MG_410	-	phosphate ABC transporter, ATP-binding protein
422	 27.63	-1	513027..514991	-	654	12045273	pstA	MG_411	-	phosphate ABC transporter, permease protein PstA
423	 28.57	0	514991..516124	-	377	12045274	-	MG_412	-	phosphate ABC transporter, substrate-binding protein
424	 25.68	-1	516245..519355	-	1036	12045275	-	MG_414	-	hypothetical protein
425	 22.66	-2	519420..521414	-	664	108885111	-	MG_525	-	hypothetical protein
426	 32.33	0	521470..521868	-	132	12045277	rpsI	MG_417	-	30S ribosomal protein S9
427	 30.39	0	521874..522314	-	146	12045278	rplM	MG_418	-	50S ribosomal protein L13
428	 26.98	-1	522352..524145	-	597	108885112	-	MG_419	-	DNA polymerase III subunits gamma and tau
429	 30.86	0	524151..527015	-	954	12045281	uvrA	MG_421	-	excinuclease ABC subunit A
430	 24.00	-2	526987..529494	-	835	12045282	-	MG_422	-	hypothetical protein
31.58	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.