IslandPathversion 1.0

IslandPath Analysis: Mycoplasma genitalium G37



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.58 STD DEV: 3.61
Mycoplasma genitalium G37, complete genome - 1..580076
477 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
239	 36.19	+1	279799..280674	+	291	12045090	-	MG_235	-	apurinic endonuclease (APN1)
240	 34.99	0	280664..281086	+	140	12045091	-	MG_236	-	hypothetical protein
241	 31.75	0	281079..281963	+	294	12045092	-	MG_237	-	hypothetical protein
242	 32.13	0	281993..283327	+	444	12045093	tig	MG_238	-	trigger factor
243	 36.68	+1	283396..285783	+	795	12045094	lon	MG_239	-	ATP-dependent protease La
244	 31.34	0	285780..286832	-	350	108885097	nadD	MG_240	-	putative nicotinate-nucleotide adenylyltransferase
245	 28.40	0	286885..288747	+	620	12045096	-	MG_241	-	hypothetical protein
246	 28.21	0	288753..290645	+	630	12045097	-	MG_242	-	hypothetical protein
247	 28.93	0	291334..293445	+	703	12045098	-	MG_244	-	UvrD/REP helicase
248	 25.90	-1	293448..293945	+	165	12045099	-	MG_245	-	5-formyltetrahydrofolate cyclo-ligase, putative
249	 31.68	0	293938..294783	+	281	12045100	-	MG_246	-	Ser/Thr protein phosphatase family protein
250	 30.14	0	294767..295486	-	239	12045101	-	MG_247	-	putative glycerol-3-phosphate acyltransferase PlsY
251	 27.55	-1	295473..296129	-	218	12045102	-	MG_248	-	hypothetical protein
252	 34.47	0	296113..297606	-	497	12045103	rpoD	MG_249	-	RNA polymerase sigma factor
253	 29.61	0	297651..299474	-	607	12045104	dnaE	MG_250	-	DNA primase
254	 32.36	0	299464..300804	-	446	12045105	-	MG_251	-	glycyl-tRNA synthetase
255	 31.14	0	300824..301552	-	242	12045106	-	MG_252	-	RNA methyltransferase
256	 31.00	0	301555..302841	-	428	12045107	cysS	MG_253	-	cysteinyl-tRNA synthetase
257	 30.35	0	302846..304825	-	659	12045108	-	MG_254	-	DNA ligase, NAD-dependent
258	 29.23	0	305001..306098	+	365	12045109	-	MG_255	-	hypothetical protein
259	 30.02	0	306202..306654	+	150	108885098	-	MG_494	-	hypothetical protein
260	 29.31	0	306821..307591	+	256	12045111	-	MG_256	-	hypothetical protein
261	 37.07	+1	307637..307930	+	97	12045112	rpmE	MG_257	-	50S ribosomal protein L31
262	 34.72	0	307930..309009	+	359	12045113	prfA	MG_258	-	peptide chain release factor 1
263	 28.52	0	309010..310380	+	456	12045114	-	MG_259	-	HemK family modification methylase
264	 31.90	0	310511..312808	+	765	12045115	-	MG_260	-	putative lipoprotein
265	 29.37	0	315701..318325	+	874	12045116	polC-2	MG_261	-	DNA polymerase III, alpha subunit
266	 30.48	0	318332..319207	+	291	12045117	-	MG_262	-	5'-3' exonuclease, putative
267	 28.65	0	319207..320061	+	284	12045118	mutM	MG_498	-	formamidopyrimidine-DNA glycosylase
268	 31.39	0	320177..321052	+	291	12045119	-	MG_263	-	Cof-like hydrolase
269	 30.49	0	321046..321642	+	198	12045120	-	MG_264	-	dephospho-CoA kinase
270	 29.51	0	321578..322414	-	278	12045121	-	MG_265	-	Cof-like hydrolase
271	 32.62	0	322433..324811	-	792	12045122	leuS	MG_266	-	leucyl-tRNA synthetase
272	 33.05	0	324812..325159	-	115	12045123	-	MG_267	-	hypothetical protein
273	 31.59	0	325193..325879	-	228	12045124	-	MG_268	-	hypothetical protein
274	 33.04	0	326030..327052	-	340	12045125	-	MG_269	-	hypothetical protein
275	 32.94	0	327433..328443	-	336	12045126	lplA	MG_270	-	lipoyltransferase/lipoate-protein ligase, putative
276	 35.37	+1	328454..329827	-	457	12045127	pdhD	MG_271	-	dihydrolipoamide dehydrogenase
277	 35.76	+1	329831..330985	-	384	12045128	pdhC	MG_272	-	branched-chain alpha-keto acid dehydrogenase subunit E2
278	 39.45	+2	331235..332215	-	326	12045129	pdhB	MG_273	-	pyruvate dehydrogenase component E1, beta subunit
279	 37.60	+1	332233..333309	-	358	12045130	pdhA	MG_274	-	pyruvate dehydrogenase component E1, alpha subunit
280	 35.42	+1	333337..334773	-	478	108885099	nox	MG_275	-	NADH oxidase
281	 36.28	+1	334856..335398	-	180	12045132	-	MG_276	-	adenine phosphoribosyltransferase
282	 33.81	0	335412..338324	-	970	12045133	-	MG_277	-	hypothetical protein
283	 31.44	0	338367..340529	+	720	12045134	relA	MG_278	-	GTP pyrophosphokinase
284	 29.68	0	340526..341182	-	218	12045135	-	MG_279	-	hypothetical protein
285	 31.95	0	341175..341972	-	265	108885100	-	MG_280	-	hypothetical protein
286	 34.89	0	342033..343703	-	556	12045137	-	MG_281	-	hypothetical protein
287	 36.21	+1	344365..344850	-	161	12045138	greA	MG_282	-	transcription elongation factor GreA
288	 31.82	0	345182..346633	+	483	12045139	proS	MG_283	-	prolyl-tRNA synthetase
289	 29.57	0	346854..347252	+	132	12045140	-	MG_284	-	hypothetical protein
290	 32.09	0	347215..348258	+	347	12045141	-	MG_285	-	hypothetical protein
291	 27.92	-1	348261..348851	+	196	12045142	-	MG_286	-	hypothetical protein
292	 26.27	-1	348883..349137	+	84	12045143	-	MG_287	-	acyl carrier protein
293	 27.91	-1	354024..355130	+	368	12045144	-	MG_289	-	phosphonate ABC transporter, substrate binding protein (P37), putative
294	 26.42	-1	355120..355857	+	245	12045145	-	MG_290	-	phosphonate ABC transporter, ATP-binding protein, putative
295	 26.04	-1	355847..357478	+	543	12045146	-	MG_291	-	phosphonate ABC transporter, permease protein (P69), putative
296	 26.62	-1	357475..357891	-	138	12045147	-	MG_505	-	hypothetical protein
297	 28.15	0	357891..360593	-	900	12045148	alaS	MG_292	-	alanyl-tRNA synthetase
298	 27.76	-1	360651..361385	-	244	12045149	-	MG_293	-	glycerophosphoryl diester phosphodiesterase family protein
299	 31.93	0	361378..362802	-	474	12045150	-	MG_294	-	major facilitator superfamily protein, putative
300	 28.17	0	362920..364023	-	367	12045151	-	MG_295	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
301	 28.21	0	364026..364415	-	129	12045152	-	MG_296	-	hypothetical protein
302	 30.55	0	364535..365575	-	346	12045153	ftsY	MG_297	-	signal recognition particle-docking protein FtsY
303	 32.38	0	365582..368530	-	982	12045154	-	MG_298	-	chromosome segregation protein SMC
304	 34.58	0	368733..369695	-	320	12045155	eutD	MG_299	-	phosphotransacetylase
305	 33.58	0	369713..370948	-	411	108885101	pgk	MG_300	-	phosphoglycerate kinase
306	 36.59	+1	370950..371963	-	337	12045157	gap	MG_301	-	glyceraldehyde-3-phosphate dehydrogenase
307	 27.78	-1	371994..372947	-	317	12045158	-	MG_302	-	metal ion ABC transporter, permease protein, putative
308	 29.14	0	372926..373999	-	357	12045159	-	MG_303	-	metal ion ABC transporter, ATP-binding protein, putative
309	 31.24	0	373981..374793	-	270	108885102	-	MG_304	-	metal ion ABC transporter, ATP binding protein, putative
310	 36.91	+1	374919..376706	-	595	12045161	dnaK	MG_305	-	molecular chaperone DnaK
311	 31.13	0	376794..377975	-	393	12045162	-	MG_306	-	hypothetical protein
312	 31.21	0	377975..381508	-	1177	12045163	-	MG_307	-	putative lipoprotein
313	 28.39	0	381493..382725	-	410	12045164	-	MG_308	-	DEAD-box ATP dependent DNA helicase
314	 30.59	0	382732..386409	-	1225	108885103	-	MG_309	-	putative lipoprotein
315	 31.35	0	386463..387269	+	268	12045166	-	MG_310	-	alpha/beta fold family hydrolase
316	 33.01	0	387276..387893	-	205	12045167	rpsD	MG_311	-	30S ribosomal protein S4
317	 32.28	0	387916..391335	-	1139	12045168	hmw1	MG_312	-	HMW1 cytadherence accessory protein
318	 29.75	0	391395..392258	-	287	12045169	-	MG_313	-	hypothetical protein
319	 31.91	0	392303..393634	-	443	12045170	-	MG_314	-	hypothetical protein
320	 27.07	-1	393658..394551	-	297	12045171	-	MG_315	-	DNA polymerase III, delta subunit, putative
321	 27.48	-1	394475..395584	-	369	12045172	-	MG_316	-	ComEC/Rec2-related protein
322	 34.17	0	395625..397424	-	599	12045173	hmw3	MG_317	-	HMW3 cytadherence accessory protein
323	 39.50	+2	397439..398281	-	280	12045174	-	MG_318	-	P32 adhesin
324	 32.96	0	398298..398834	-	178	12045175	-	MG_319	-	hypothetical protein
325	 32.17	0	398938..399798	-	286	12045176	-	MG_320	-	hypothetical protein
326	 35.44	+1	400119..402923	-	934	12045178	-	MG_321	-	putative lipoprotein
327	 33.04	0	403723..405399	-	558	12045179	-	MG_322	-	TrkH family potassium uptake protein , putative
328	 33.04	0	405456..406139	+	227	12045180	-	MG_323	-	TrkA family potassium uptake protein
329	 28.77	0	406975..407784	-	269	12045181	-	MG_515	-	hypothetical protein
330	 33.05	0	407729..408793	-	354	12045182	pepP	MG_324	-	M24 family metallopeptidase
331	 31.48	0	408793..408954	-	53	12045183	rpmG	MG_325	-	50S ribosomal protein L33
332	 30.41	0	408971..409858	-	295	12045184	-	MG_326	-	degV family protein
333	 29.86	0	409871..410677	-	268	12045185	-	MG_327	-	alpha/beta fold family hydrolase
334	 29.24	0	410664..412934	-	756	12045186	-	MG_328	-	hypothetical protein
335	 31.85	0	412973..414319	-	448	12045187	engA	MG_329	-	GTP-binding protein EngA
336	 30.58	0	414323..414976	-	217	12045188	cmk	MG_330	-	cytidylate kinase
337	 25.51	-1	414985..415623	-	212	12045189	-	MG_331	-	hypothetical protein
338	 30.42	0	415611..416330	-	239	12045190	-	MG_332	-	hypothetical protein
31.58	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.