IslandPathversion 1.0

IslandPath Analysis: Mycoplasma genitalium G37



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.58 STD DEV: 3.61
Mycoplasma genitalium G37, complete genome - 1..580076
477 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
175	 37.09	+1	202424..202636	+	70	12045026	infA	MG_173	-	translation initiation factor IF-1
176	 37.72	+1	202647..202760	+	37	12045027	rpmJ	MG_174	-	50S ribosomal protein L36
177	 39.20	+2	202760..203134	+	124	12045028	rpsM	MG_175	-	30S ribosomal protein S13
178	 44.26	+2	203134..203499	+	121	108885090	rpS11	MG_176	-	30S ribosomal protein S11
179	 37.79	+1	203515..204501	+	328	12045030	rpoA	MG_177	-	DNA-directed RNA polymerase subunit alpha
180	 36.02	+1	204514..204885	+	123	12045031	rplQ	MG_178	-	50S ribosomal protein L17
181	 35.64	+1	204872..205696	+	274	12045032	-	MG_179	-	cobalt transporter ATP-binding subunit
182	 36.94	+1	205681..206595	+	304	12045033	-	MG_180	-	cobalt transporter ATP-binding subunit
183	 35.55	+1	206588..207850	+	420	12045034	-	MG_181	-	metal ion ABC transporter, permease protein
184	 34.83	0	207843..208577	+	244	12045035	truA	MG_182	-	tRNA pseudouridine synthase A
185	 32.18	0	208567..210390	+	607	12045036	pepF	MG_183	-	oligoendopeptidase F
186	 30.40	0	210391..211344	+	317	12045037	-	MG_184	-	adenine-specific DNA modification methylase
187	 32.62	0	211444..213549	+	701	12045038	-	MG_185	-	putative lipoprotein
188	 36.39	+1	216016..216768	+	250	12045039	-	MG_186	-	nuclease-like protein
189	 33.79	0	216761..218518	+	585	12045040	-	MG_187	-	ABC transporter, ATP-binding protein
190	 37.68	+1	218521..219510	+	329	12045041	-	MG_188	-	ABC transporter, permease protein
191	 36.15	+1	219482..220438	+	318	108885091	-	MG_189	-	ABC transporter, permease protein
192	 33.54	0	220607..221563	+	318	108885092	mgpA	MG_190	-	DHH family phosphoesterase
193	 39.86	+2	221570..225904	+	1444	12045044	mgpB	MG_191	-	MgPa adhesin
194	 40.70	+2	225906..229067	+	1053	108885093	mgpC	MG_192	-	P110 protein
195	 33.04	0	232009..233034	+	341	12045046	pheS	MG_194	-	phenylalanyl-tRNA synthetase subunit alpha
196	 32.42	0	233038..235458	+	806	12045047	pheT	MG_195	-	phenylalanyl-tRNA synthetase subunit beta
197	 35.16	0	235517..236062	+	181	12045048	infC	MG_196	-	translation initiation factor IF-3
198	 40.56	+2	236065..236244	+	59	12045049	rpmI	MG_197	-	50S ribosomal protein L35
199	 35.20	+1	236247..236621	+	124	12045050	rplT	MG_198	-	50S ribosomal protein L20
200	 38.98	+2	237347..239152	+	601	12045052	-	MG_200	-	DnaJ domain-containing protein
201	 35.32	+1	239164..239817	+	217	12045053	grpE	MG_201	-	co-chaperone GrpE
202	 36.31	+1	239827..240195	+	122	12045054	-	MG_202	-	hypothetical protein
203	 36.54	+1	240323..242224	+	633	12045055	parE	MG_203	-	DNA topoisomerase IV, B subunit
204	 33.72	0	242224..244569	+	781	12045056	parC	MG_204	-	DNA topoisomerase IV, A subunit
205	 34.50	0	244566..245597	-	343	12045057	hrcA	MG_205	-	heat-inducible transcription repressor
206	 32.78	0	245633..247426	+	597	12045058	uvrC	MG_206	-	excinuclease ABC, C subunit
207	 35.52	+1	247407..247910	+	167	12045059	-	MG_207	-	Ser/Thr protein phosphatase family protein
208	 33.50	0	247903..248493	-	196	12045060	-	MG_208	-	glycoprotease family protein
209	 34.30	0	248477..249403	-	308	12045061	-	MG_209	-	RluA family pseudouridine synthase
210	 29.67	0	249403..249948	-	181	12045062	lspA	MG_210	-	signal peptidase II
211	 35.15	0	250149..250808	+	219	12045063	-	MG_480	-	hypothetical protein
212	 38.62	+1	250808..250996	+	62	12045331	rpsU	MG_481	-	30S ribosomal protein S21
213	 33.33	0	250998..251441	+	147	12045064	-	MG_211	-	hypothetical protein
214	 32.75	0	251444..251788	+	114	12045065	acpS	MG_482	-	4'-phosphopantetheinyl transferase
215	 32.22	0	251781..252587	+	268	12045066	plsC	MG_212	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
216	 32.06	0	252580..253995	+	471	12045067	scpA	MG_213	-	fused segregation and condensation protein A/unknown domain-containing protein
217	 35.10	0	253979..254602	+	207	12045068	scpB	MG_214	-	segregation and condensation protein B
218	 36.32	+1	254621..255592	+	323	12045069	pfkA	MG_215	-	6-phosphofructokinase
219	 36.28	+1	255595..257121	+	508	12045070	pyk	MG_216	-	pyruvate kinase
220	 34.05	0	258041..259159	+	372	12045071	-	MG_217	-	proline-rich P65 protein
221	 34.15	0	259177..264594	+	1805	12045072	hmw2	MG_218	-	HMW2 cytadherence accessory protein
222	 35.83	+1	264597..265637	+	346	12045073	-	MG_491	-	hypothetical protein
223	 33.78	0	265597..266043	+	148	12045074	-	MG_219	-	hypothetical protein
224	 34.04	0	266075..266356	-	93	108885094	-	MG_220	-	hypothetical protein
225	 34.98	0	266666..267091	+	141	108885095	-	MG_221	-	cell division protein MraZ
226	 33.44	0	267081..268010	+	309	12045077	-	MG_222	-	S-adenosyl-methyltransferase MraW
227	 31.07	0	268012..269247	+	411	12045078	-	MG_223	-	hypothetical protein
228	 33.24	0	269250..270359	+	369	12045079	ftsZ	MG_224	-	cell division protein FtsZ
229	 33.47	0	270405..271874	+	489	12045080	-	MG_225	-	amino acid-polyamine-organocation (APC) permease family protein
230	 32.39	0	271840..273318	+	492	108885096	-	MG_226	-	amino acid-polyamine-organocation (APC) permease family protein
231	 33.10	0	273790..274653	+	287	12045082	thyA	MG_227	-	thymidylate synthase
232	 30.02	0	274653..275135	+	160	12045083	dhfR	MG_228	-	dihydrofolate reductase
233	 37.24	+1	275141..276163	+	340	12045084	nrdF	MG_229	-	ribonucleotide-diphosphate reductase subunit beta
234	 34.42	0	276167..276628	+	153	12045085	nrdI	MG_230	-	ribonucleotide reductase stimulatory protein
235	 35.36	+1	276647..278812	+	721	12045086	nrdE	MG_231	-	ribonucleotide-diphosphate reductase subunit alpha
236	 36.63	+1	278905..279207	+	100	12045087	rplU	MG_232	-	50S ribosomal protein L21
237	 35.00	0	279200..279499	+	99	12045088	-	MG_233	-	hypothetical protein
238	 40.32	+2	279492..279806	+	104	12045089	rpmA	MG_234	-	50S ribosomal protein L27
239	 36.19	+1	279799..280674	+	291	12045090	-	MG_235	-	apurinic endonuclease (APN1)
240	 34.99	0	280664..281086	+	140	12045091	-	MG_236	-	hypothetical protein
241	 31.75	0	281079..281963	+	294	12045092	-	MG_237	-	hypothetical protein
242	 32.13	0	281993..283327	+	444	12045093	tig	MG_238	-	trigger factor
243	 36.68	+1	283396..285783	+	795	12045094	lon	MG_239	-	ATP-dependent protease La
244	 31.34	0	285780..286832	-	350	108885097	nadD	MG_240	-	putative nicotinate-nucleotide adenylyltransferase
245	 28.40	0	286885..288747	+	620	12045096	-	MG_241	-	hypothetical protein
246	 28.21	0	288753..290645	+	630	12045097	-	MG_242	-	hypothetical protein
247	 28.93	0	291334..293445	+	703	12045098	-	MG_244	-	UvrD/REP helicase
248	 25.90	-1	293448..293945	+	165	12045099	-	MG_245	-	5-formyltetrahydrofolate cyclo-ligase, putative
249	 31.68	0	293938..294783	+	281	12045100	-	MG_246	-	Ser/Thr protein phosphatase family protein
250	 30.14	0	294767..295486	-	239	12045101	-	MG_247	-	putative glycerol-3-phosphate acyltransferase PlsY
251	 27.55	-1	295473..296129	-	218	12045102	-	MG_248	-	hypothetical protein
252	 34.47	0	296113..297606	-	497	12045103	rpoD	MG_249	-	RNA polymerase sigma factor
253	 29.61	0	297651..299474	-	607	12045104	dnaE	MG_250	-	DNA primase
254	 32.36	0	299464..300804	-	446	12045105	-	MG_251	-	glycyl-tRNA synthetase
255	 31.14	0	300824..301552	-	242	12045106	-	MG_252	-	RNA methyltransferase
256	 31.00	0	301555..302841	-	428	12045107	cysS	MG_253	-	cysteinyl-tRNA synthetase
257	 30.35	0	302846..304825	-	659	12045108	-	MG_254	-	DNA ligase, NAD-dependent
258	 29.23	0	305001..306098	+	365	12045109	-	MG_255	-	hypothetical protein
259	 30.02	0	306202..306654	+	150	108885098	-	MG_494	-	hypothetical protein
260	 29.31	0	306821..307591	+	256	12045111	-	MG_256	-	hypothetical protein
261	 37.07	+1	307637..307930	+	97	12045112	rpmE	MG_257	-	50S ribosomal protein L31
262	 34.72	0	307930..309009	+	359	12045113	prfA	MG_258	-	peptide chain release factor 1
263	 28.52	0	309010..310380	+	456	12045114	-	MG_259	-	HemK family modification methylase
264	 31.90	0	310511..312808	+	765	12045115	-	MG_260	-	putative lipoprotein
265	 29.37	0	315701..318325	+	874	12045116	polC-2	MG_261	-	DNA polymerase III, alpha subunit
266	 30.48	0	318332..319207	+	291	12045117	-	MG_262	-	5'-3' exonuclease, putative
267	 28.65	0	319207..320061	+	284	12045118	mutM	MG_498	-	formamidopyrimidine-DNA glycosylase
268	 31.39	0	320177..321052	+	291	12045119	-	MG_263	-	Cof-like hydrolase
269	 30.49	0	321046..321642	+	198	12045120	-	MG_264	-	dephospho-CoA kinase
270	 29.51	0	321578..322414	-	278	12045121	-	MG_265	-	Cof-like hydrolase
271	 32.62	0	322433..324811	-	792	12045122	leuS	MG_266	-	leucyl-tRNA synthetase
272	 33.05	0	324812..325159	-	115	12045123	-	MG_267	-	hypothetical protein
273	 31.59	0	325193..325879	-	228	12045124	-	MG_268	-	hypothetical protein
274	 33.04	0	326030..327052	-	340	12045125	-	MG_269	-	hypothetical protein
31.58	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.