IslandPathversion 1.0

IslandPath Analysis: Mycoplasma genitalium G37



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.58 STD DEV: 3.61
Mycoplasma genitalium G37, complete genome - 1..580076
477 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
151	 29.89	0	189492..189956	+	154	108885089	-	MG_478	-	hypothetical protein
152	 36.45	+1	190046..190366	+	106	12045003	rpsJ	MG_150	-	30S ribosomal protein S10
153	 38.76	+1	190370..191143	+	257	12045004	rplC	MG_151	-	50S ribosomal protein L3
154	 36.79	+1	191143..191778	+	211	12045005	rplD	MG_152	-	50S ribosomal protein L4
155	 34.58	0	191782..192102	+	106	12045006	rplW	MG_153	-	50S ribosomal protein L23
156	 40.33	+2	192102..192959	+	285	12045007	rplB	MG_154	-	50S ribosomal protein L2
157	 36.36	+1	192959..193222	+	87	12045008	rpsS	MG_155	-	30S ribosomal protein S19
158	 36.32	+1	193225..193659	+	144	12045009	rplV	MG_156	-	50S ribosomal protein L22
159	 39.03	+2	193662..194468	+	268	12045010	rpsC	MG_157	-	30S ribosomal protein S3
160	 41.01	+2	194474..194890	+	138	12045011	rplP	MG_158	-	50S ribosomal protein L16
161	 32.50	0	194890..195492	+	200	12045012	rpmC	MG_159	-	50S ribosomal protein L29
162	 37.21	+1	195492..195749	+	85	12045013	rpsQ	MG_160	-	30S ribosomal protein S17
163	 38.48	+1	195753..196121	+	122	12045014	rplN	MG_161	-	50S ribosomal protein L14
164	 35.47	+1	196121..196447	+	108	12045015	rplX	MG_162	-	50S ribosomal protein L24
165	 36.65	+1	196453..196995	+	180	12045016	rplE	MG_163	-	50S ribosomal protein L5
166	 41.94	+2	196998..197183	+	61	12045017	rpsN	MG_164	-	30S ribosomal protein S14
167	 33.80	0	197177..197602	+	141	12045018	rpsH	MG_165	-	30S ribosomal protein S8
168	 34.77	0	197609..198163	+	184	12045019	rplF	MG_166	-	50S ribosomal protein L6
169	 35.63	+1	198165..198512	+	115	12045020	rplR	MG_167	-	50S ribosomal protein L18
170	 38.84	+2	198517..199152	+	211	12045021	rpsE	MG_168	-	30S ribosomal protein S5
171	 37.75	+1	199158..199610	+	150	12045022	rplO	MG_169	-	50S ribosomal protein L15
172	 39.64	+2	199610..201037	+	475	12045023	secY	MG_170	-	preprotein translocase subunit SecY
173	 33.95	0	201031..201675	+	214	12045024	adk	MG_171	-	adenylate kinase
174	 35.61	+1	201678..202424	+	248	12045025	map	MG_172	-	methionine aminopeptidase, type I
175	 37.09	+1	202424..202636	+	70	12045026	infA	MG_173	-	translation initiation factor IF-1
176	 37.72	+1	202647..202760	+	37	12045027	rpmJ	MG_174	-	50S ribosomal protein L36
177	 39.20	+2	202760..203134	+	124	12045028	rpsM	MG_175	-	30S ribosomal protein S13
178	 44.26	+2	203134..203499	+	121	108885090	rpS11	MG_176	-	30S ribosomal protein S11
179	 37.79	+1	203515..204501	+	328	12045030	rpoA	MG_177	-	DNA-directed RNA polymerase subunit alpha
180	 36.02	+1	204514..204885	+	123	12045031	rplQ	MG_178	-	50S ribosomal protein L17
181	 35.64	+1	204872..205696	+	274	12045032	-	MG_179	-	cobalt transporter ATP-binding subunit
182	 36.94	+1	205681..206595	+	304	12045033	-	MG_180	-	cobalt transporter ATP-binding subunit
183	 35.55	+1	206588..207850	+	420	12045034	-	MG_181	-	metal ion ABC transporter, permease protein
184	 34.83	0	207843..208577	+	244	12045035	truA	MG_182	-	tRNA pseudouridine synthase A
185	 32.18	0	208567..210390	+	607	12045036	pepF	MG_183	-	oligoendopeptidase F
186	 30.40	0	210391..211344	+	317	12045037	-	MG_184	-	adenine-specific DNA modification methylase
187	 32.62	0	211444..213549	+	701	12045038	-	MG_185	-	putative lipoprotein
188	 36.39	+1	216016..216768	+	250	12045039	-	MG_186	-	nuclease-like protein
189	 33.79	0	216761..218518	+	585	12045040	-	MG_187	-	ABC transporter, ATP-binding protein
190	 37.68	+1	218521..219510	+	329	12045041	-	MG_188	-	ABC transporter, permease protein
191	 36.15	+1	219482..220438	+	318	108885091	-	MG_189	-	ABC transporter, permease protein
192	 33.54	0	220607..221563	+	318	108885092	mgpA	MG_190	-	DHH family phosphoesterase
193	 39.86	+2	221570..225904	+	1444	12045044	mgpB	MG_191	-	MgPa adhesin
194	 40.70	+2	225906..229067	+	1053	108885093	mgpC	MG_192	-	P110 protein
195	 33.04	0	232009..233034	+	341	12045046	pheS	MG_194	-	phenylalanyl-tRNA synthetase subunit alpha
196	 32.42	0	233038..235458	+	806	12045047	pheT	MG_195	-	phenylalanyl-tRNA synthetase subunit beta
197	 35.16	0	235517..236062	+	181	12045048	infC	MG_196	-	translation initiation factor IF-3
198	 40.56	+2	236065..236244	+	59	12045049	rpmI	MG_197	-	50S ribosomal protein L35
199	 35.20	+1	236247..236621	+	124	12045050	rplT	MG_198	-	50S ribosomal protein L20
200	 38.98	+2	237347..239152	+	601	12045052	-	MG_200	-	DnaJ domain-containing protein
201	 35.32	+1	239164..239817	+	217	12045053	grpE	MG_201	-	co-chaperone GrpE
202	 36.31	+1	239827..240195	+	122	12045054	-	MG_202	-	hypothetical protein
203	 36.54	+1	240323..242224	+	633	12045055	parE	MG_203	-	DNA topoisomerase IV, B subunit
204	 33.72	0	242224..244569	+	781	12045056	parC	MG_204	-	DNA topoisomerase IV, A subunit
205	 34.50	0	244566..245597	-	343	12045057	hrcA	MG_205	-	heat-inducible transcription repressor
206	 32.78	0	245633..247426	+	597	12045058	uvrC	MG_206	-	excinuclease ABC, C subunit
207	 35.52	+1	247407..247910	+	167	12045059	-	MG_207	-	Ser/Thr protein phosphatase family protein
208	 33.50	0	247903..248493	-	196	12045060	-	MG_208	-	glycoprotease family protein
209	 34.30	0	248477..249403	-	308	12045061	-	MG_209	-	RluA family pseudouridine synthase
210	 29.67	0	249403..249948	-	181	12045062	lspA	MG_210	-	signal peptidase II
211	 35.15	0	250149..250808	+	219	12045063	-	MG_480	-	hypothetical protein
212	 38.62	+1	250808..250996	+	62	12045331	rpsU	MG_481	-	30S ribosomal protein S21
213	 33.33	0	250998..251441	+	147	12045064	-	MG_211	-	hypothetical protein
214	 32.75	0	251444..251788	+	114	12045065	acpS	MG_482	-	4'-phosphopantetheinyl transferase
215	 32.22	0	251781..252587	+	268	12045066	plsC	MG_212	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
216	 32.06	0	252580..253995	+	471	12045067	scpA	MG_213	-	fused segregation and condensation protein A/unknown domain-containing protein
217	 35.10	0	253979..254602	+	207	12045068	scpB	MG_214	-	segregation and condensation protein B
218	 36.32	+1	254621..255592	+	323	12045069	pfkA	MG_215	-	6-phosphofructokinase
219	 36.28	+1	255595..257121	+	508	12045070	pyk	MG_216	-	pyruvate kinase
220	 34.05	0	258041..259159	+	372	12045071	-	MG_217	-	proline-rich P65 protein
221	 34.15	0	259177..264594	+	1805	12045072	hmw2	MG_218	-	HMW2 cytadherence accessory protein
222	 35.83	+1	264597..265637	+	346	12045073	-	MG_491	-	hypothetical protein
223	 33.78	0	265597..266043	+	148	12045074	-	MG_219	-	hypothetical protein
224	 34.04	0	266075..266356	-	93	108885094	-	MG_220	-	hypothetical protein
225	 34.98	0	266666..267091	+	141	108885095	-	MG_221	-	cell division protein MraZ
226	 33.44	0	267081..268010	+	309	12045077	-	MG_222	-	S-adenosyl-methyltransferase MraW
227	 31.07	0	268012..269247	+	411	12045078	-	MG_223	-	hypothetical protein
228	 33.24	0	269250..270359	+	369	12045079	ftsZ	MG_224	-	cell division protein FtsZ
229	 33.47	0	270405..271874	+	489	12045080	-	MG_225	-	amino acid-polyamine-organocation (APC) permease family protein
230	 32.39	0	271840..273318	+	492	108885096	-	MG_226	-	amino acid-polyamine-organocation (APC) permease family protein
231	 33.10	0	273790..274653	+	287	12045082	thyA	MG_227	-	thymidylate synthase
232	 30.02	0	274653..275135	+	160	12045083	dhfR	MG_228	-	dihydrofolate reductase
233	 37.24	+1	275141..276163	+	340	12045084	nrdF	MG_229	-	ribonucleotide-diphosphate reductase subunit beta
234	 34.42	0	276167..276628	+	153	12045085	nrdI	MG_230	-	ribonucleotide reductase stimulatory protein
235	 35.36	+1	276647..278812	+	721	12045086	nrdE	MG_231	-	ribonucleotide-diphosphate reductase subunit alpha
236	 36.63	+1	278905..279207	+	100	12045087	rplU	MG_232	-	50S ribosomal protein L21
237	 35.00	0	279200..279499	+	99	12045088	-	MG_233	-	hypothetical protein
238	 40.32	+2	279492..279806	+	104	12045089	rpmA	MG_234	-	50S ribosomal protein L27
239	 36.19	+1	279799..280674	+	291	12045090	-	MG_235	-	apurinic endonuclease (APN1)
240	 34.99	0	280664..281086	+	140	12045091	-	MG_236	-	hypothetical protein
241	 31.75	0	281079..281963	+	294	12045092	-	MG_237	-	hypothetical protein
242	 32.13	0	281993..283327	+	444	12045093	tig	MG_238	-	trigger factor
243	 36.68	+1	283396..285783	+	795	12045094	lon	MG_239	-	ATP-dependent protease La
244	 31.34	0	285780..286832	-	350	108885097	nadD	MG_240	-	putative nicotinate-nucleotide adenylyltransferase
245	 28.40	0	286885..288747	+	620	12045096	-	MG_241	-	hypothetical protein
246	 28.21	0	288753..290645	+	630	12045097	-	MG_242	-	hypothetical protein
247	 28.93	0	291334..293445	+	703	12045098	-	MG_244	-	UvrD/REP helicase
248	 25.90	-1	293448..293945	+	165	12045099	-	MG_245	-	5-formyltetrahydrofolate cyclo-ligase, putative
249	 31.68	0	293938..294783	+	281	12045100	-	MG_246	-	Ser/Thr protein phosphatase family protein
250	 30.14	0	294767..295486	-	239	12045101	-	MG_247	-	putative glycerol-3-phosphate acyltransferase PlsY
31.58	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.