IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
682	 26.77	0	838759..839688	-	309	83319765	-	MCAP_0722	-	peptide methionine sulfoxide reductase msrA/msrB
683	 23.13	0	839804..842017	-	737	83319879	-	MCAP_0723	-	putative lipoprotein
684	 20.75	0	842026..842931	-	301	83319996	-	MCAP_0724	-	hypothetical protein
685	 21.71	0	843048..844337	-	429	83319544	-	MCAP_0725	-	hypothetical protein
686	 21.98	0	844625..845593	-	322	83319624	-	MCAP_0726	-	hypothetical protein
687	 23.22	0	845783..848155	-	790	83320053	-	MCAP_0727	-	putative lipoprotein
688	 22.33	0	848167..849066	-	299	83319752	-	MCAP_0728	-	hypothetical protein
689	 19.73	-1	849165..850913	-	582	83319380	-	MCAP_0729	-	ABC transporter permease protein p69
690	 22.27	0	850877..851626	-	249	83319557	-	MCAP_0730	-	ABC transporter, ATP-binding protein
691	 27.24	0	851627..853087	-	486	83319275	-	MCAP_0731	-	ABC transporter, substrate-binding protein
692	 24.19	0	853320..854183	-	287	83319627	-	MCAP_0732	-	Cof-like hydrolase
693	 21.02	0	854317..855510	+	397	83319553	-	MCAP_0733	-	aminotransferase, classes I and II, putative
694	 24.88	0	855520..855921	+	133	83320015	-	MCAP_0734	-	endoribonuclease L-PSP, putative
695	 27.40	0	855962..857209	-	415	83319300	-	MCAP_0735	-	hypothetical protein
696	 26.34	0	857413..858684	-	423	83319772	-	MCAP_0736	-	hypothetical protein
697	 25.85	0	858892..860133	-	413	83319902	-	MCAP_0737	-	hypothetical protein
698	 26.25	0	860356..861696	-	446	83319778	-	MCAP_0738	-	hypothetical protein
699	 21.50	0	861836..862984	+	382	83319760	-	MCAP_0739	-	hypothetical protein
700	 24.55	0	864129..864857	+	242	83319404	nagB1	MCAP_0749	-	glucosamine-6-phosphate isomerase
701	 25.57	0	864962..865708	+	248	83319507	tpiA	MCAP_0750	-	triosephosphate isomerase
702	 22.82	0	865701..866537	+	278	83319355	-	MCAP_0751	-	HAD family hydrolase
703	 26.57	0	866540..868135	+	531	83320056	gpmI	MCAP_0752	-	phosphoglyceromutase
704	 23.83	0	868232..868831	+	199	83319808	-	MCAP_0753	-	hypothetical protein
705	 23.02	0	868833..869831	+	332	83319672	-	MCAP_0754	-	hypothetical protein
706	 26.01	0	869897..870565	-	222	83320004	deoC	MCAP_0755	-	deoxyribose-phosphate aldolase
707	 24.30	0	870577..872259	-	560	83319929	-	MCAP_0756	-	phosphoglucomutase/phosphomannomutase
708	 28.92	+1	872424..873737	+	437	83320010	deoA	MCAP_0757	-	pyrimidine-nucleoside phosphorylase
709	 22.16	0	873824..875980	-	718	83319284	-	MCAP_0758	-	putative lipoprotein
710	 21.01	0	876647..878050	+	467	83319394	mgtE	MCAP_0760	-	magnesium transporter
711	 19.91	-1	878052..878714	+	220	83319486	trmB	MCAP_0761	-	tRNA (guanine-N(7)-)-methyltransferase
712	 22.00	0	879090..879680	-	196	83319532	-	MCAP_0762	-	hypothetical protein
713	 27.37	0	879834..880520	-	228	83319536	-	MCAP_0763	-	hypothetical protein
714	 15.45	-2	880855..880977	-	40	83319616	-	MCAP_0764	-	hypothetical protein
715	 23.73	0	881281..881832	-	183	83319960	hpt2	MCAP_0765	-	hypoxanthine phosphoribosyltransferase
716	 22.71	0	881855..883153	-	432	83319287	purB	MCAP_0766	-	adenylosuccinate lyase
717	 25.40	0	883146..884444	-	432	83319683	purA	MCAP_0767	-	adenylosuccinate synthetase
718	 23.85	0	884729..885529	-	266	83319887	-	MCAP_0768	-	TatD family deoxyribonuclease
719	 26.20	0	885990..887348	+	452	83319539	-	MCAP_0770	-	putative lipoprotein
720	 21.70	0	887434..888903	-	489	83319268	-	MCAP_0771	-	hypothetical protein
721	 15.46	-2	888906..889856	-	316	83319994	-	MCAP_0772	-	hypothetical protein
722	 25.78	0	890143..892140	+	665	83319947	uvrB	MCAP_0773	-	excinuclease ABC subunit B
723	 25.84	0	892149..894989	+	946	83319666	uvrA	MCAP_0774	-	excinuclease ABC, A subunit
724	 20.54	0	894982..896091	+	369	83319540	folC	MCAP_0775	-	folate synthetase-polyglutamyl folate synthetase
725	 26.52	0	896119..896793	+	224	83319841	-	MCAP_0776	-	hypothetical protein
726	 24.20	0	896874..897815	+	313	83319297	-	MCAP_0777	-	HPr kinase/phosphorylase
727	 20.94	0	897826..899406	+	526	83319642	lgt1	MCAP_0778	-	prolipoprotein diacylglyceryl transferase
728	 30.55	+1	899390..900322	+	310	83319334	trxB	MCAP_0779	-	thioredoxin reductase
729	 24.95	0	900331..901761	+	476	83319801	lgt2	MCAP_0780	-	prolipoprotein diacylglyceryl transferase
730	 22.26	0	901773..902702	+	309	83319881	-	MCAP_0781	-	hypothetical protein
731	 26.28	0	903025..904158	-	377	83320064	-	MCAP_0782	-	putative lipoprotein
732	 27.11	0	904220..905842	-	540	83319432	-	MCAP_0783	-	PTS system, IIBC component, putative
733	 23.81	0	905894..906124	-	76	83319303	-	MCAP_0784	-	hypothetical protein
734	 20.42	0	906114..906833	-	239	83319561	-	MCAP_0785	-	hypothetical protein
735	 21.18	0	906833..907342	-	169	83319697	-	MCAP_0786	-	hypothetical protein
736	 30.42	+1	907342..909021	-	559	83319785	-	MCAP_0787	-	PTS system, IIBC component, putative
737	 17.26	-1	909644..909811	+	55	83320062	-	MCAP_0788	-	DeoR family transcriptional regulator
738	 19.44	-1	909935..910906	+	323	83319867	-	MCAP_0789	-	hypothetical protein
739	 21.76	0	911127..912845	+	572	83319968	-	MCAP_0790	-	hypothetical protein
740	 19.36	-1	912884..913699	-	271	83319448	-	MCAP_0791	-	hypothetical protein
741	 25.52	0	913892..915823	+	643	83319302	topA	MCAP_0792	-	DNA topoisomerase I
742	 19.73	-1	916628..917509	-	293	83319900	-	MCAP_0794	-	hypothetical protein
743	 19.85	-1	917496..918311	-	271	83319811	-	MCAP_0795	-	hypothetical protein
744	 18.99	-1	918301..919653	-	450	83319634	-	MCAP_0796	-	putative lipoprotein
745	 21.99	0	919631..920335	-	234	83319478	-	MCAP_0797	-	ABC transporter, ATP-binding protein
746	 17.31	-1	920337..922202	-	621	83319360	-	MCAP_0798	-	ABC transporter, permease protein, putative
747	 24.08	0	922342..923238	-	298	83319269	-	MCAP_0799	-	putative lipoprotein
748	 23.57	0	923231..924070	-	279	83319393	-	MCAP_0800	-	hypothetical protein
749	 21.28	0	924057..925010	-	317	83320022	-	MCAP_0801	-	putative lipoprotein
750	 20.45	0	925029..926867	-	612	83319911	-	MCAP_0802	-	hypothetical protein
751	 26.49	0	926975..928741	-	588	83319426	-	MCAP_0803	-	C4-dicarboxylate anaerobic carrier
752	 20.87	0	928810..929499	-	229	83319948	-	MCAP_0804	-	zinc metalloprotease, putative
753	 27.49	0	929506..930600	-	364	83319819	engD	MCAP_0805	-	translation-associated GTPase
754	 22.89	0	930636..930836	-	66	83319609	-	MCAP_0806	-	hypothetical protein
755	 19.54	-1	930838..931533	-	231	83319743	gidB	MCAP_0807	-	methyltransferase gidB
756	 22.28	0	931533..932129	-	198	83319934	pgsA	MCAP_0808	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
757	 23.98	0	933920..934603	-	227	83319992	-	MCAP_0810	-	hypothetical protein
758	 27.00	0	934569..936116	-	515	83319547	-	MCAP_0811	-	hypothetical protein
759	 20.14	0	936175..938910	-	911	83319694	-	MCAP_0812	-	magnesium-transporting ATPase E1-E2 family protein
760	 31.10	+1	938918..939544	-	208	83319548	hup	MCAP_0813	-	DNA-binding protein HU
761	 27.31	0	940433..941860	-	475	83319340	-	MCAP_0814	-	transporter protein, putative
762	 20.51	0	942121..943695	-	524	83319492	-	MCAP_0815	-	hypothetical protein
763	 17.63	-1	943860..944483	-	207	83319921	-	MCAP_0816	-	hypothetical protein
764	 24.26	0	944540..945520	-	326	83319586	asnA	MCAP_0817	-	asparagine synthetase AsnA
765	 26.02	0	945932..946177	+	81	83319493	rpsT	MCAP_0818	-	30S ribosomal protein S20
766	 23.62	0	946228..947586	-	452	83319722	trmE	MCAP_0819	-	tRNA modification GTPase TrmE
767	 32.44	+2	947790..948014	+	74	83320042	-	MCAP_0820	-	hypothetical protein
768	 24.90	0	948123..949082	+	319	83319909	-	MCAP_0821	-	glycoprotease family protein
769	 19.81	-1	949106..950236	+	376	83319420	-	MCAP_0822	-	hypothetical protein
770	 24.88	0	950247..951086	+	279	83319279	-	MCAP_0823	-	HAD superfamily hydrolase
771	 28.64	+1	951095..952459	+	454	83319692	asnC	MCAP_0824	-	asparaginyl-tRNA synthetase
772	 27.11	0	952728..954092	+	454	83319503	-	MCAP_0825	-	phosphonate ABC transporter, phosphonate-binding protein, putative
773	 26.56	0	954106..954858	+	250	83319390	-	MCAP_0826	-	phosphonate ABC transporter, ATP-binding protein
774	 21.60	0	954862..957597	+	911	83320020	-	MCAP_0827	-	alkylphosphonate ABC transporter, permease protein
775	 16.55	-1	957622..959688	-	688	83319950	-	MCAP_0828	-	metallo-beta-lactamase superfamily protein, putative
776	 25.86	0	965268..966110	+	280	83319761	-	MCAP_0834	-	HAD superfamily hydrolase
777	 27.83	0	966122..966430	+	102	83319455	trxA	MCAP_0835	-	thioredoxin
778	 28.01	0	966562..968064	-	500	83319783	lysS	MCAP_0836	-	lysyl-tRNA synthetase
779	 29.23	+1	968067..968993	-	308	83320047	dus	MCAP_0837	-	tRNA-dihydrouridine synthase
780	 25.40	0	969043..969357	-	104	83319857	-	MCAP_0838	-	hypothetical protein
781	 26.08	0	969451..970719	-	422	83319858	serS	MCAP_0839	-	seryl-tRNA synthetase
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.