IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
23	 29.93	+1	29212..29652	+	146	83319323	ssb	MCAP_0025	-	single-strand DNA-binding protein
24	 24.12	0	29671..29898	+	75	83319872	rpsR	MCAP_0026	-	30S ribosomal protein S18
25	 23.90	0	30594..31982	+	462	83319435	-	MCAP_0027	-	hypothetical protein
26	 27.41	0	32257..33810	+	517	83319352	-	MCAP_0028	-	PTS system, mannitol-specific IIBC component, putative
27	 24.77	0	33810..34568	+	252	83320002	-	MCAP_0029	-	sorbitol-6-phosphate dehydrogenase
28	 19.92	-1	34568..34813	+	81	83319928	-	MCAP_0030	-	PTS system, mannitol-specific IIA component, putative
29	 21.43	0	35027..35824	+	265	83319840	-	MCAP_0031	-	RpiR family phosphosugar-binding transcriptional regulator , putative
30	 19.70	-1	35825..36829	+	334	83319746	-	MCAP_0032	-	mannitol-1-phosphate 5-dehydrogenase, putative
31	 26.24	0	36866..38458	-	530	83319296	-	MCAP_0033	-	lipoprotein, putative (LppA)
32	 24.23	0	38483..40042	-	519	83319596	-	MCAP_0034	-	LppA family lipoprotein
33	 23.40	0	40240..41769	+	509	83320001	metG	MCAP_0035	-	methionyl-tRNA synthetase
34	 28.11	+1	43614..45221	+	535	83319838	-	MCAP_0037	-	ABC transporter, ATP-binding protein
35	 22.82	0	45211..47769	+	852	83319467	-	MCAP_0038	-	ABC transporter, permease protein
36	 28.83	+1	47772..48749	+	325	83319356	-	MCAP_0039	-	ABC transporter, permease protein
37	 27.22	0	48817..51204	-	795	83319625	gyrA	MCAP_0040	-	DNA gyrase, A subunit
38	 28.50	+1	51336..53240	-	634	83319520	gyrB	MCAP_0041	-	DNA gyrase, B subunit
39	 23.78	0	53640..55241	-	533	83319266	-	MCAP_0042	-	putative lipoprotein
40	 20.16	0	55409..56182	-	257	83319304	-	MCAP_0043	-	hypothetical protein
41	 21.72	0	56166..56888	-	240	83319582	-	MCAP_0044	-	hypothetical protein
42	 27.13	0	56998..59832	-	944	83319511	secA	MCAP_0045	-	preprotein translocase subunit SecA
43	 18.58	-1	59912..60487	+	191	83319813	-	MCAP_0046	-	hypothetical protein
44	 20.98	0	60583..61497	+	304	83319696	-	MCAP_0047	-	5-3 exonuclease family protein
45	 24.88	0	61692..62708	+	338	83319983	-	MCAP_0048	-	adenine-specific DNA methylase, putative
46	 22.19	0	62638..63615	+	325	83319264	dam	MCAP_0049	-	DNA adenine methylase
47	 25.48	0	63593..65170	+	525	83319365	-	MCAP_0050	-	restriction endonuclease
48	 30.57	+1	66644..67114	+	156	83319665	-	MCAP_0052	-	hypothetical protein
49	 22.83	0	67839..68114	+	91	83320006	-	MCAP_0053	-	hypothetical protein
50	 19.93	-1	68104..68670	+	188	83320013	-	MCAP_0054	-	dephospho-CoA kinase
51	 21.73	0	68672..69481	-	269	83319276	-	MCAP_0055	-	hemolysin A
52	 23.15	0	69481..69696	-	71	83319277	-	MCAP_0056	-	hypothetical protein
53	 22.89	0	69689..71095	-	468	83319530	xseA	MCAP_0057	-	exodeoxyribonuclease VII, large subunit
54	 23.81	0	71097..71495	-	132	83319650	-	MCAP_0058	-	N utilization substance protein B (nusB), putative
55	 22.50	0	71507..72577	-	356	83319506	-	MCAP_0059	-	putative lipoprotein
56	 24.48	0	72604..73473	-	289	83319329	-	MCAP_0060	-	endonuclease IV
57	 18.06	-1	73466..74218	-	250	83320034	-	MCAP_0061	-	riboflavin kinase / FAD synthetase family protein
58	 21.84	0	74775..76349	+	524	83319717	-	MCAP_0063	-	glycosyl transferase, group 2 family protein
59	 25.60	0	76352..77230	+	292	83319439	-	MCAP_0064	-	UTP-glucose-1-phosphate uridylyltransferase
60	 31.93	+1	77432..77860	+	142	83319927	rplK	MCAP_0065	-	50S ribosomal protein L11
61	 29.37	+1	77860..78540	+	226	83319637	rplA	MCAP_0066	-	50S ribosomal protein L1
62	 31.33	+1	78769..79266	+	165	83319357	rplJ	MCAP_0067	-	50S ribosomal protein L10
63	 33.60	+2	79342..79710	+	122	83319793	rplL	MCAP_0068	-	50S ribosomal protein L7/L12
64	 18.33	-1	79881..81053	+	390	83319531	-	MCAP_0069	-	hypothetical protein
65	 28.00	0	81043..84906	+	1287	83319487	rpoB	MCAP_0070	-	DNA-directed RNA polymerase subunit beta
66	 29.25	+1	84918..88685	+	1255	83319423	rpoC	MCAP_0071	-	DNA-directed RNA polymerase beta' subunit
67	 24.66	0	88775..90964	+	729	83319632	-	MCAP_0072	-	putative lipoprotein
68	 27.12	0	90971..91276	-	101	83319742	-	MCAP_0073	-	hypothetical protein
69	 26.91	0	91301..91798	+	165	83319834	-	MCAP_0074	-	ribose 5-phosphate isomerase B, putative
70	 29.71	+1	91782..93023	+	413	83319931	glyA	MCAP_0075	-	serine hydroxymethyltransferase
71	 30.29	+1	93125..93748	+	207	83319896	upp	MCAP_0076	-	uracil phosphoribosyltransferase
72	 19.55	-1	93889..94287	+	132	83319999	-	MCAP_0077	-	hypothetical protein
73	 23.93	0	94287..95147	+	286	83319402	atpB	MCAP_0078	-	F0F1 ATP synthase subunit A
74	 31.37	+1	95186..95491	+	101	83319513	atpE	MCAP_0079	-	ATP synthase F0, subunit c
75	 23.99	0	95519..96064	+	181	83319804	atpF	MCAP_0080	-	ATP synthase F0, B subunit
76	 21.79	0	96066..96611	+	181	83319489	atpH	MCAP_0081	-	F0F1 ATP synthase subunit delta
77	 29.85	+1	96623..98200	+	525	83319474	atpA1	MCAP_0082	-	F0F1 ATP synthase subunit alpha
78	 23.37	0	98202..99044	+	280	83319574	atpG	MCAP_0083	-	F0F1 ATP synthase subunit gamma
79	 30.33	+1	99053..100483	+	476	83319730	atpD1	MCAP_0084	-	F0F1 ATP synthase subunit beta
80	 22.33	0	100483..100782	+	99	83320026	atpC	MCAP_0085	-	ATP synthase F1, epsilon subunit
81	 22.44	0	100840..102051	-	403	83319904	-	MCAP_0086	-	hypothetical protein
82	 26.12	0	102390..105218	+	942	83319358	mgtA	MCAP_0087	-	magnesium-translocating P-type ATPase
83	 17.78	-1	105679..105813	-	44	83319328	-	MCAP_0088	-	hypothetical protein
84	 29.79	+1	105998..107209	+	403	83319656	arcA	MCAP_0089	-	arginine deiminase
85	 30.72	+1	107227..108222	+	331	83319698	arcB	MCAP_0090	-	ornithine carbamoyltransferase, catabolic
86	 29.46	+1	108285..109754	+	489	83319593	-	MCAP_0091	-	transporter, putative
87	 21.99	0	111276..112403	-	375	83319262	-	MCAP_0093	-	beta-lactamase, putative
88	 31.07	+1	112508..114721	-	737	83319967	ptsG	MCAP_0094	-	PTS system, glucose-specific IIABC component
89	 19.43	-1	115141..115629	-	162	83319512	-	MCAP_0095	-	hypothetical protein
90	 19.69	-1	115629..116075	-	148	83319425	smpB	MCAP_0096	-	SsrA-binding protein
91	 21.28	0	116085..118199	-	704	83319777	-	MCAP_0097	-	3'-5' exoribonuclease
92	 24.93	0	118235..118591	-	118	83319671	secG	MCAP_0098	-	preprotein translocase subunit SecG
93	 28.53	+1	118773..119792	+	339	83319806	nrdF	MCAP_0099	-	ribonucleotide-diphosphate reductase subunit beta
94	 27.00	0	119802..120275	+	157	83319863	nrdI	MCAP_0100	-	ribonucleotide reductase stimulatory protein
95	 27.18	0	120262..122424	+	720	83319418	nrdE	MCAP_0101	-	ribonucleotide-diphosphate reductase subunit alpha
96	 29.66	+1	122709..123743	+	344	83320003	prs	MCAP_0104	-	phosphoribosylpyrophosphate synthase
97	 19.96	-1	124048..124608	+	186	83320028	pth	MCAP_0105	-	peptidyl-tRNA hydrolase
98	 23.20	0	124739..125182	+	147	83319898	rplI	MCAP_0106	-	50S ribosomal protein L9
99	 27.46	0	125184..126512	+	442	83319407	dnaC	MCAP_0107	-	replicative DNA helicase
100	 22.88	0	126601..127863	+	420	83319523	-	MCAP_0108	-	hypothetical protein
101	 25.35	0	127990..128916	+	308	83319622	-	MCAP_0109	-	hypothetical protein
102	 20.29	0	128925..130250	+	441	83319731	cysS	MCAP_0110	-	cysteinyl-tRNA synthetase
103	 21.63	0	130252..130986	+	244	83319473	-	MCAP_0111	-	RNA methyltransferase
104	 28.40	+1	131047..131208	+	53	83319914	rpmG	MCAP_0112	-	50S ribosomal protein L33
105	 21.27	0	131208..131522	+	104	83320011	secE	MCAP_0113	-	preprotein translocase, SecE subunit, putative
106	 28.53	+1	131539..132183	+	214	83319581	nusG	MCAP_0114	-	transcription antitermination protein NusG
107	 24.84	0	132631..138528	+	1965	83319484	-	MCAP_0115	-	hypothetical protein
108	 25.75	0	138537..141491	+	984	83319343	-	MCAP_0116	-	oligopeptide ABC transporter, oligopeptide-binding protein, putative
109	 26.07	0	141491..142564	+	357	83319676	-	MCAP_0117	-	oligopeptide ABC transporter, permease protein
110	 25.12	0	142566..143576	+	336	83319997	-	MCAP_0118	-	oligopeptide ABC transporter, permease protein
111	 26.49	0	143655..145028	+	457	83319554	-	MCAP_0119	-	oligopeptide ABC transporter, ATP-binding protein
112	 25.28	0	145104..146357	+	417	83319311	-	MCAP_0120	-	oligopeptide ABC transporter, ATP-binding protein
113	 15.85	-2	146389..146817	-	142	83319856	-	MCAP_0121	-	hypothetical protein
114	 24.10	0	146872..147651	+	259	83319906	-	MCAP_0122	-	hypothetical protein
115	 25.86	0	147705..149243	+	512	83319480	-	MCAP_0123	-	ABC transporter, ATP-binding protein
116	 25.94	0	149275..150072	-	265	83319824	-	MCAP_0124	-	TatD family hydrolase
117	 26.24	0	150259..151485	+	408	83319702	ilvA	MCAP_0125	-	threonine dehydratase
118	 24.91	0	151701..153290	+	529	83319391	-	MCAP_0126	-	hypothetical protein
119	 20.95	0	153295..154158	+	287	83319514	-	MCAP_0127	-	hypothetical protein
120	 24.09	0	154353..155120	+	255	162316927	nagB	MCAP_0128	-	glucosamine-6-phosphate deaminase
121	 27.51	0	155124..156806	+	560	83320032	-	MCAP_0129	-	PTS system, N-acetylglucosamine-specific IIBC component, putative
122	 23.55	0	156937..158388	+	483	83320024	gltX	MCAP_0130	-	glutamyl-tRNA synthetase
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.