IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
645	 28.91	+1	806320..806862	-	180	83319736	rplF	MCAP_0681	-	50S ribosomal protein L6
646	 30.00	+1	806876..807265	-	129	83319832	rpsH	MCAP_0682	-	30S ribosomal protein S8
647	 29.57	+1	807287..807472	-	61	83319468	rpsN	MCAP_0683	-	30S ribosomal protein S14
648	 26.89	0	807491..808033	-	180	83319577	rplE	MCAP_0684	-	50S ribosomal protein L5
649	 30.28	+1	808052..808378	-	108	83320060	rplX	MCAP_0685	-	50S ribosomal protein L24
650	 32.52	+2	808392..808760	-	122	83319597	rplN	MCAP_0686	-	50S ribosomal protein L14
651	 25.97	0	808776..809033	-	85	83319386	rpsQ	MCAP_0687	-	30S ribosomal protein S17
652	 29.74	+1	809033..809449	-	138	83319500	rpmC	MCAP_0688	-	50S ribosomal protein L29
653	 33.33	+2	809449..809862	-	137	83319564	rplP	MCAP_0689	-	50S ribosomal protein L16
654	 28.77	+1	809865..810566	-	233	83319775	rpsC	MCAP_0690	-	30S ribosomal protein S3
655	 29.17	+1	810584..810919	-	111	83319685	rplV	MCAP_0691	-	50S ribosomal protein L22
656	 30.34	+1	810943..811209	-	88	83319959	rpsS	MCAP_0692	-	30S ribosomal protein S19
657	 33.10	+2	811231..812076	-	281	83319372	rplB	MCAP_0693	-	50S ribosomal protein L2
658	 24.56	0	812129..812413	-	94	83319653	rplW	MCAP_0694	-	50S ribosomal protein L23
659	 29.67	+1	812413..813039	-	208	83319335	rplD	MCAP_0695	-	50S ribosomal protein L4
660	 31.55	+1	813052..813723	-	223	83319916	rplC	MCAP_0696	-	50S ribosomal protein L3
661	 31.07	+1	813798..814106	-	102	83320025	rpsJ	MCAP_0697	-	30S ribosomal protein S10
662	 29.23	+1	814402..815400	-	332	83319762	-	MCAP_0698	-	dihydroxyacetone kinase family protein
663	 24.17	0	815710..816549	+	279	83319823	-	MCAP_0699	-	hypothetical protein
664	 24.17	0	817226..818425	-	399	83319591	-	MCAP_0704	-	putative lipoprotein
665	 20.26	0	818538..819233	-	231	83319621	-	MCAP_0705	-	hypothetical protein
666	 24.56	0	819238..820092	-	284	83319359	folD	MCAP_0706	-	methylene-tetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
667	 24.28	0	820101..821702	-	533	83319907	-	MCAP_0707	-	TrkH family potassium uptake protein , putative
668	 25.93	0	821781..822509	+	242	83319706	-	MCAP_0708	-	TrkA family potassium uptake protein , putative
669	 23.06	0	822546..823985	-	479	83319771	gatB	MCAP_0709	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
670	 26.06	0	823987..825444	-	485	83320039	gatA	MCAP_0710	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
671	 24.92	0	825444..825740	-	98	83319319	gatC	MCAP_0711	-	glutamyl-tRNA(Gln) amidotransferase, C subunit,
672	 22.92	0	825742..827748	-	668	83319601	ligA	MCAP_0712	-	DNA ligase, NAD-dependent
673	 22.29	0	827752..829752	-	666	83319495	-	MCAP_0713	-	hypothetical protein
674	 18.70	-1	829755..830663	-	302	83319852	-	MCAP_0714	-	ribosomal large subunit pseudouridine synthase A
675	 21.96	0	830666..831676	-	336	83319757	-	MCAP_0715	-	CAAX amino terminal protease family protein, putative
676	 30.74	+1	831735..832004	-	89	83319942	ptsH	MCAP_0716	-	phosphocarrier protein HPr
677	 22.82	0	832070..834238	-	722	83319825	pcrA	MCAP_0717	-	ATP-dependent DNA helicase pcrA
678	 19.14	-1	834250..834996	-	248	83319753	-	MCAP_0718	-	hypothetical protein
679	 20.69	0	834996..835952	-	318	83320045	-	MCAP_0719	-	glycosyl transferase, group 2 family protein
680	 25.04	0	836066..837283	-	405	83319595	-	MCAP_0720	-	putative lipoprotein
681	 24.66	0	837411..838655	-	414	83319462	-	MCAP_0721	-	putative lipoprotein
682	 26.77	0	838759..839688	-	309	83319765	-	MCAP_0722	-	peptide methionine sulfoxide reductase msrA/msrB
683	 23.13	0	839804..842017	-	737	83319879	-	MCAP_0723	-	putative lipoprotein
684	 20.75	0	842026..842931	-	301	83319996	-	MCAP_0724	-	hypothetical protein
685	 21.71	0	843048..844337	-	429	83319544	-	MCAP_0725	-	hypothetical protein
686	 21.98	0	844625..845593	-	322	83319624	-	MCAP_0726	-	hypothetical protein
687	 23.22	0	845783..848155	-	790	83320053	-	MCAP_0727	-	putative lipoprotein
688	 22.33	0	848167..849066	-	299	83319752	-	MCAP_0728	-	hypothetical protein
689	 19.73	-1	849165..850913	-	582	83319380	-	MCAP_0729	-	ABC transporter permease protein p69
690	 22.27	0	850877..851626	-	249	83319557	-	MCAP_0730	-	ABC transporter, ATP-binding protein
691	 27.24	0	851627..853087	-	486	83319275	-	MCAP_0731	-	ABC transporter, substrate-binding protein
692	 24.19	0	853320..854183	-	287	83319627	-	MCAP_0732	-	Cof-like hydrolase
693	 21.02	0	854317..855510	+	397	83319553	-	MCAP_0733	-	aminotransferase, classes I and II, putative
694	 24.88	0	855520..855921	+	133	83320015	-	MCAP_0734	-	endoribonuclease L-PSP, putative
695	 27.40	0	855962..857209	-	415	83319300	-	MCAP_0735	-	hypothetical protein
696	 26.34	0	857413..858684	-	423	83319772	-	MCAP_0736	-	hypothetical protein
697	 25.85	0	858892..860133	-	413	83319902	-	MCAP_0737	-	hypothetical protein
698	 26.25	0	860356..861696	-	446	83319778	-	MCAP_0738	-	hypothetical protein
699	 21.50	0	861836..862984	+	382	83319760	-	MCAP_0739	-	hypothetical protein
700	 24.55	0	864129..864857	+	242	83319404	nagB1	MCAP_0749	-	glucosamine-6-phosphate isomerase
701	 25.57	0	864962..865708	+	248	83319507	tpiA	MCAP_0750	-	triosephosphate isomerase
702	 22.82	0	865701..866537	+	278	83319355	-	MCAP_0751	-	HAD family hydrolase
703	 26.57	0	866540..868135	+	531	83320056	gpmI	MCAP_0752	-	phosphoglyceromutase
704	 23.83	0	868232..868831	+	199	83319808	-	MCAP_0753	-	hypothetical protein
705	 23.02	0	868833..869831	+	332	83319672	-	MCAP_0754	-	hypothetical protein
706	 26.01	0	869897..870565	-	222	83320004	deoC	MCAP_0755	-	deoxyribose-phosphate aldolase
707	 24.30	0	870577..872259	-	560	83319929	-	MCAP_0756	-	phosphoglucomutase/phosphomannomutase
708	 28.92	+1	872424..873737	+	437	83320010	deoA	MCAP_0757	-	pyrimidine-nucleoside phosphorylase
709	 22.16	0	873824..875980	-	718	83319284	-	MCAP_0758	-	putative lipoprotein
710	 21.01	0	876647..878050	+	467	83319394	mgtE	MCAP_0760	-	magnesium transporter
711	 19.91	-1	878052..878714	+	220	83319486	trmB	MCAP_0761	-	tRNA (guanine-N(7)-)-methyltransferase
712	 22.00	0	879090..879680	-	196	83319532	-	MCAP_0762	-	hypothetical protein
713	 27.37	0	879834..880520	-	228	83319536	-	MCAP_0763	-	hypothetical protein
714	 15.45	-2	880855..880977	-	40	83319616	-	MCAP_0764	-	hypothetical protein
715	 23.73	0	881281..881832	-	183	83319960	hpt2	MCAP_0765	-	hypoxanthine phosphoribosyltransferase
716	 22.71	0	881855..883153	-	432	83319287	purB	MCAP_0766	-	adenylosuccinate lyase
717	 25.40	0	883146..884444	-	432	83319683	purA	MCAP_0767	-	adenylosuccinate synthetase
718	 23.85	0	884729..885529	-	266	83319887	-	MCAP_0768	-	TatD family deoxyribonuclease
719	 26.20	0	885990..887348	+	452	83319539	-	MCAP_0770	-	putative lipoprotein
720	 21.70	0	887434..888903	-	489	83319268	-	MCAP_0771	-	hypothetical protein
721	 15.46	-2	888906..889856	-	316	83319994	-	MCAP_0772	-	hypothetical protein
722	 25.78	0	890143..892140	+	665	83319947	uvrB	MCAP_0773	-	excinuclease ABC subunit B
723	 25.84	0	892149..894989	+	946	83319666	uvrA	MCAP_0774	-	excinuclease ABC, A subunit
724	 20.54	0	894982..896091	+	369	83319540	folC	MCAP_0775	-	folate synthetase-polyglutamyl folate synthetase
725	 26.52	0	896119..896793	+	224	83319841	-	MCAP_0776	-	hypothetical protein
726	 24.20	0	896874..897815	+	313	83319297	-	MCAP_0777	-	HPr kinase/phosphorylase
727	 20.94	0	897826..899406	+	526	83319642	lgt1	MCAP_0778	-	prolipoprotein diacylglyceryl transferase
728	 30.55	+1	899390..900322	+	310	83319334	trxB	MCAP_0779	-	thioredoxin reductase
729	 24.95	0	900331..901761	+	476	83319801	lgt2	MCAP_0780	-	prolipoprotein diacylglyceryl transferase
730	 22.26	0	901773..902702	+	309	83319881	-	MCAP_0781	-	hypothetical protein
731	 26.28	0	903025..904158	-	377	83320064	-	MCAP_0782	-	putative lipoprotein
732	 27.11	0	904220..905842	-	540	83319432	-	MCAP_0783	-	PTS system, IIBC component, putative
733	 23.81	0	905894..906124	-	76	83319303	-	MCAP_0784	-	hypothetical protein
734	 20.42	0	906114..906833	-	239	83319561	-	MCAP_0785	-	hypothetical protein
735	 21.18	0	906833..907342	-	169	83319697	-	MCAP_0786	-	hypothetical protein
736	 30.42	+1	907342..909021	-	559	83319785	-	MCAP_0787	-	PTS system, IIBC component, putative
737	 17.26	-1	909644..909811	+	55	83320062	-	MCAP_0788	-	DeoR family transcriptional regulator
738	 19.44	-1	909935..910906	+	323	83319867	-	MCAP_0789	-	hypothetical protein
739	 21.76	0	911127..912845	+	572	83319968	-	MCAP_0790	-	hypothetical protein
740	 19.36	-1	912884..913699	-	271	83319448	-	MCAP_0791	-	hypothetical protein
741	 25.52	0	913892..915823	+	643	83319302	topA	MCAP_0792	-	DNA topoisomerase I
742	 19.73	-1	916628..917509	-	293	83319900	-	MCAP_0794	-	hypothetical protein
743	 19.85	-1	917496..918311	-	271	83319811	-	MCAP_0795	-	hypothetical protein
744	 18.99	-1	918301..919653	-	450	83319634	-	MCAP_0796	-	putative lipoprotein
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.