IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
597	 45.06	+2	751744..752391	+	215	83319937	-	MCAP_0629	-	lipoprotein (VmcE)
598	 42.75	+2	753218..753748	+	176	83319556	-	MCAP_0630	-	lipoprotein (VmcF)
599	 27.49	0	753818..755032	-	404	83319915	pgk	MCAP_0631	-	phosphoglycerate kinase
600	 28.42	+1	755160..756176	-	338	83320051	gap	MCAP_0632	-	glyceraldehyde-3-phosphate dehydrogenase
601	 19.23	-1	756269..757204	-	311	83319318	-	MCAP_0633	-	hypothetical protein
602	 19.24	-1	757214..758398	-	394	83319403	-	MCAP_0634	-	hypothetical protein
603	 22.18	0	758556..759380	-	274	83319527	mutM	MCAP_0635	-	formamidopyrimidine-DNA glycosylase
604	 21.09	0	759391..762126	-	911	83319510	polA	MCAP_0636	-	DNA polymerase I
605	 19.55	-1	762135..765095	-	986	83319615	dnaE	MCAP_0637	-	DNA-directed DNA polymerase III (polc)
606	 21.39	0	765267..767921	+	884	83319315	-	MCAP_0638	-	hypothetical protein
607	 24.58	0	768010..769254	-	414	83319274	tyrS	MCAP_0639	-	tyrosyl-tRNA synthetase
608	 25.99	0	769262..770323	-	353	83319385	-	MCAP_0640	-	nicotinate phosphoribosyltransferase
609	 24.17	0	770301..770933	-	210	83319951	-	MCAP_0641	-	methionyl/phenylalanyl tRNA synthetase domain-containing protein
610	 26.31	0	770984..771823	+	279	83320049	-	MCAP_0642	-	hypothetical protein
611	 25.12	0	771834..772685	+	283	83319590	-	MCAP_0643	-	degV family protein
612	 19.66	-1	772982..773449	-	155	83319836	-	MCAP_0646	-	FUR family transcriptional regulator
613	 25.68	0	773451..773672	-	73	83319519	-	MCAP_0647	-	acyl carrier protein, putative
614	 18.97	-1	773693..774061	-	122	83319259	-	MCAP_0648	-	putative lipoprotein
615	 17.23	-1	774048..775115	-	355	83319476	-	MCAP_0649	-	hypothetical protein
616	 29.26	+1	775419..776351	-	310	83319524	arcC	MCAP_0651	-	carbamate kinase
617	 30.96	+1	776470..777564	-	364	83319708	-	MCAP_0652	-	agmatine deiminase
618	 27.91	0	777571..778989	-	472	83319362	-	MCAP_0653	-	amino acid permease family protein
619	 29.87	+1	779011..780108	-	365	83319535	argF	MCAP_0654	-	putrescine carbamoyltransferase
620	 22.52	0	780339..781226	+	295	83319711	-	MCAP_0655	-	ABC transporter, ATP-binding protein
621	 20.13	0	781228..781992	+	254	83319830	-	MCAP_0656	-	ABC transporter permease
622	 22.50	0	782026..782505	-	159	83319926	-	MCAP_0657	-	hypothetical protein
623	 24.97	0	782589..784154	-	521	83319998	-	MCAP_0658	-	hypothetical protein
624	 26.50	0	784221..786635	-	804	83319332	leuS	MCAP_0659	-	leucyl-tRNA synthetase
625	 20.85	0	786903..789746	-	947	83319643	-	MCAP_0661	-	putative lipoprotein
626	 33.33	+2	789908..790306	-	132	83319563	rpsI	MCAP_0662	-	30S ribosomal protein S9
627	 29.17	+1	790306..790761	-	151	83319647	rplM	MCAP_0663	-	50S ribosomal protein L13
628	 20.82	0	790881..795026	-	1381	83319508	-	MCAP_0664	-	hypothetical protein
629	 20.00	-1	795151..795900	-	249	83320035	truA	MCAP_0665	-	tRNA pseudouridine synthase A
630	 25.22	0	795902..796912	-	336	83319897	-	MCAP_0666	-	cobalt ABC transporter, permease protein
631	 26.55	0	796925..797794	-	289	83319301	-	MCAP_0667	-	cobalt transporter ATP-binding subunit
632	 24.94	0	797821..799047	-	408	83319389	-	MCAP_0668	-	cobalt transporter ATP-binding subunit
633	 28.33	+1	799158..799517	-	119	83319893	rplQ	MCAP_0669	-	50S ribosomal protein L17
634	 27.46	0	799537..800490	-	317	83319728	rpoA	MCAP_0670	-	DNA-directed RNA polymerase subunit alpha
635	 36.41	+2	800494..800883	-	129	83319613	rpsK	MCAP_0671	-	30S ribosomal protein S11
636	 29.78	+1	800909..801274	-	121	83319525	rpsM	MCAP_0672	-	30S ribosomal protein S13
637	 35.09	+2	801312..801425	-	37	83319430	rpmJ	MCAP_0673	-	50S ribosomal protein L36
638	 34.67	+2	801495..801719	-	74	83319271	infA	MCAP_0674	-	translation initiation factor IF-1
639	 29.23	+1	801731..802486	-	251	83319870	map	MCAP_0675	-	methionine aminopeptidase, type I
640	 23.21	0	802486..803127	-	213	83319545	adk	MCAP_0676	-	adenylate kinase
641	 26.22	0	803256..804704	-	482	83319677	secY	MCAP_0677	-	preprotein translocase subunit SecY
642	 30.14	+1	804704..805141	-	145	83319799	rplO	MCAP_0678	-	50S ribosomal protein L15
643	 30.20	+1	805161..805925	-	254	83319769	rpsE	MCAP_0679	-	30S ribosomal protein S5
644	 27.07	0	805944..806294	-	116	83319958	rplR	MCAP_0680	-	50S ribosomal protein L18
645	 28.91	+1	806320..806862	-	180	83319736	rplF	MCAP_0681	-	50S ribosomal protein L6
646	 30.00	+1	806876..807265	-	129	83319832	rpsH	MCAP_0682	-	30S ribosomal protein S8
647	 29.57	+1	807287..807472	-	61	83319468	rpsN	MCAP_0683	-	30S ribosomal protein S14
648	 26.89	0	807491..808033	-	180	83319577	rplE	MCAP_0684	-	50S ribosomal protein L5
649	 30.28	+1	808052..808378	-	108	83320060	rplX	MCAP_0685	-	50S ribosomal protein L24
650	 32.52	+2	808392..808760	-	122	83319597	rplN	MCAP_0686	-	50S ribosomal protein L14
651	 25.97	0	808776..809033	-	85	83319386	rpsQ	MCAP_0687	-	30S ribosomal protein S17
652	 29.74	+1	809033..809449	-	138	83319500	rpmC	MCAP_0688	-	50S ribosomal protein L29
653	 33.33	+2	809449..809862	-	137	83319564	rplP	MCAP_0689	-	50S ribosomal protein L16
654	 28.77	+1	809865..810566	-	233	83319775	rpsC	MCAP_0690	-	30S ribosomal protein S3
655	 29.17	+1	810584..810919	-	111	83319685	rplV	MCAP_0691	-	50S ribosomal protein L22
656	 30.34	+1	810943..811209	-	88	83319959	rpsS	MCAP_0692	-	30S ribosomal protein S19
657	 33.10	+2	811231..812076	-	281	83319372	rplB	MCAP_0693	-	50S ribosomal protein L2
658	 24.56	0	812129..812413	-	94	83319653	rplW	MCAP_0694	-	50S ribosomal protein L23
659	 29.67	+1	812413..813039	-	208	83319335	rplD	MCAP_0695	-	50S ribosomal protein L4
660	 31.55	+1	813052..813723	-	223	83319916	rplC	MCAP_0696	-	50S ribosomal protein L3
661	 31.07	+1	813798..814106	-	102	83320025	rpsJ	MCAP_0697	-	30S ribosomal protein S10
662	 29.23	+1	814402..815400	-	332	83319762	-	MCAP_0698	-	dihydroxyacetone kinase family protein
663	 24.17	0	815710..816549	+	279	83319823	-	MCAP_0699	-	hypothetical protein
664	 24.17	0	817226..818425	-	399	83319591	-	MCAP_0704	-	putative lipoprotein
665	 20.26	0	818538..819233	-	231	83319621	-	MCAP_0705	-	hypothetical protein
666	 24.56	0	819238..820092	-	284	83319359	folD	MCAP_0706	-	methylene-tetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
667	 24.28	0	820101..821702	-	533	83319907	-	MCAP_0707	-	TrkH family potassium uptake protein , putative
668	 25.93	0	821781..822509	+	242	83319706	-	MCAP_0708	-	TrkA family potassium uptake protein , putative
669	 23.06	0	822546..823985	-	479	83319771	gatB	MCAP_0709	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
670	 26.06	0	823987..825444	-	485	83320039	gatA	MCAP_0710	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
671	 24.92	0	825444..825740	-	98	83319319	gatC	MCAP_0711	-	glutamyl-tRNA(Gln) amidotransferase, C subunit,
672	 22.92	0	825742..827748	-	668	83319601	ligA	MCAP_0712	-	DNA ligase, NAD-dependent
673	 22.29	0	827752..829752	-	666	83319495	-	MCAP_0713	-	hypothetical protein
674	 18.70	-1	829755..830663	-	302	83319852	-	MCAP_0714	-	ribosomal large subunit pseudouridine synthase A
675	 21.96	0	830666..831676	-	336	83319757	-	MCAP_0715	-	CAAX amino terminal protease family protein, putative
676	 30.74	+1	831735..832004	-	89	83319942	ptsH	MCAP_0716	-	phosphocarrier protein HPr
677	 22.82	0	832070..834238	-	722	83319825	pcrA	MCAP_0717	-	ATP-dependent DNA helicase pcrA
678	 19.14	-1	834250..834996	-	248	83319753	-	MCAP_0718	-	hypothetical protein
679	 20.69	0	834996..835952	-	318	83320045	-	MCAP_0719	-	glycosyl transferase, group 2 family protein
680	 25.04	0	836066..837283	-	405	83319595	-	MCAP_0720	-	putative lipoprotein
681	 24.66	0	837411..838655	-	414	83319462	-	MCAP_0721	-	putative lipoprotein
682	 26.77	0	838759..839688	-	309	83319765	-	MCAP_0722	-	peptide methionine sulfoxide reductase msrA/msrB
683	 23.13	0	839804..842017	-	737	83319879	-	MCAP_0723	-	putative lipoprotein
684	 20.75	0	842026..842931	-	301	83319996	-	MCAP_0724	-	hypothetical protein
685	 21.71	0	843048..844337	-	429	83319544	-	MCAP_0725	-	hypothetical protein
686	 21.98	0	844625..845593	-	322	83319624	-	MCAP_0726	-	hypothetical protein
687	 23.22	0	845783..848155	-	790	83320053	-	MCAP_0727	-	putative lipoprotein
688	 22.33	0	848167..849066	-	299	83319752	-	MCAP_0728	-	hypothetical protein
689	 19.73	-1	849165..850913	-	582	83319380	-	MCAP_0729	-	ABC transporter permease protein p69
690	 22.27	0	850877..851626	-	249	83319557	-	MCAP_0730	-	ABC transporter, ATP-binding protein
691	 27.24	0	851627..853087	-	486	83319275	-	MCAP_0731	-	ABC transporter, substrate-binding protein
692	 24.19	0	853320..854183	-	287	83319627	-	MCAP_0732	-	Cof-like hydrolase
693	 21.02	0	854317..855510	+	397	83319553	-	MCAP_0733	-	aminotransferase, classes I and II, putative
694	 24.88	0	855520..855921	+	133	83320015	-	MCAP_0734	-	endoribonuclease L-PSP, putative
695	 27.40	0	855962..857209	-	415	83319300	-	MCAP_0735	-	hypothetical protein
696	 26.34	0	857413..858684	-	423	83319772	-	MCAP_0736	-	hypothetical protein
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.