IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
538	 24.59	0	682175..682540	+	121	83320043	-	MCAP_0569	-	hypothetical protein
539	 25.16	0	682755..683672	+	305	83319850	-	MCAP_0570	-	hypothetical protein
540	 21.82	0	683782..685014	+	410	83319924	-	MCAP_0571	-	hypothetical protein
541	 21.96	0	685488..685865	-	125	83319477	-	MCAP_0572	-	hypothetical protein
542	 18.43	-1	685929..686438	+	169	83319747	-	MCAP_0573	-	recombination protein U, putative
543	 14.90	-2	686410..686946	-	178	83319254	-	MCAP_0574	-	hypothetical protein
544	 26.74	0	687004..687276	-	90	83320061	hupA	MCAP_0575	-	DNA-binding protein HU 1
545	 18.92	-1	687308..688306	-	332	83319366	gpsA	MCAP_0576	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
546	 22.55	0	688308..689615	-	435	83319844	engA	MCAP_0577	-	GTP-binding protein EngA
547	 22.12	0	689615..690283	-	222	83320058	cmk	MCAP_0578	-	cytidylate kinase
548	 16.38	-1	690292..690987	-	231	83319419	-	MCAP_0579	-	hypothetical protein
549	 23.99	0	691056..691943	-	295	83319289	-	MCAP_0580	-	hypothetical protein
550	 29.23	+1	692084..692644	+	186	83319598	ppa	MCAP_0581	-	inorganic pyrophosphatase
551	 21.94	0	692752..693453	-	233	83319490	-	MCAP_0582	-	hypothetical protein
552	 26.23	0	693511..695775	-	754	83319399	-	MCAP_0583	-	putative lipoprotein
553	 30.08	+1	695820..695942	-	40	83319957	-	MCAP_0584	-	putative lipoprotein
554	 38.10	+2	696234..696569	-	111	83319661	-	MCAP_0585	-	putative lipoprotein
555	 18.78	-1	696604..698397	-	597	83320021	-	MCAP_0586	-	ABC transporter permease
556	 21.24	0	698444..700279	-	611	83319333	-	MCAP_0587	-	ABC transporter, ATP-binding protein, putative
557	 20.37	0	701486..702133	-	215	83319620	-	MCAP_0589	-	ribulose-phosphate 3-epimerase, putative
558	 26.04	0	702133..703941	-	602	83319837	-	MCAP_0590	-	ascorbate-specific PTS system enzyme IIC/IIB
559	 22.44	0	703953..704402	-	149	83319770	-	MCAP_0591	-	PTS system, IIA component, putative
560	 26.67	0	704691..704795	-	34	83319860	-	MCAP_0592	-	hypothetical protein
561	 30.54	+1	704901..705830	-	309	83319331	-	MCAP_0593	-	lipoprotein (VmcD)
562	 31.26	+1	706228..706662	-	144	83319662	-	MCAP_0594	-	lipoprotein (VmcC)
563	 32.77	+2	707728..708435	-	235	83319605	-	MCAP_0595	-	lipoprotein (VmcB)
564	 34.14	+2	709888..711366	-	492	83319732	-	MCAP_0596	-	lipoprotein (VmcA)
565	 18.00	-1	711633..712460	-	275	83319842	-	MCAP_0597	-	hypothetical protein
566	 28.01	0	712560..713273	-	237	83319369	-	MCAP_0598	-	hypothetical protein
567	 23.30	0	713285..713902	-	205	83319375	-	MCAP_0599	-	nucleoside kinase
568	 22.53	0	713913..714671	-	252	83319317	-	MCAP_0600	-	ribosomal large subunit pseudouridine synthase B
569	 22.86	0	714745..715374	-	209	83320037	scpB	MCAP_0601	-	chromosomal segregation and condensation protein B
570	 22.10	0	715358..716194	-	278	83319619	scpA	MCAP_0602	-	chromosomal segregation and condensation protein A
571	 17.59	-1	716204..716965	-	253	83319888	-	MCAP_0603	-	hypothetical protein
572	 19.20	-1	716977..718476	-	499	83320008	-	MCAP_0604	-	hypothetical protein
573	 27.07	0	718785..719183	-	132	83319413	-	MCAP_0605	-	putative lipoprotein
574	 20.25	0	719333..720127	-	264	83319715	-	MCAP_0606	-	alpha/beta fold family hydrolase
575	 22.67	0	720139..722595	-	818	83319651	-	MCAP_0607	-	putative lipoprotein
576	 20.19	0	722695..724239	-	514	83319889	-	MCAP_0608	-	hypothetical protein
577	 25.61	0	724303..724548	-	81	83319560	-	MCAP_0609	-	hypothetical protein
578	 27.50	0	724564..726534	-	656	83319912	tkt	MCAP_0610	-	transketolase
579	 17.28	-1	726575..726736	-	53	83319422	-	MCAP_0611	-	hypothetical protein
580	 25.37	0	726871..727611	-	246	83319755	-	MCAP_0612	-	hypothetical protein
581	 19.81	-1	727710..728981	-	423	83319831	-	MCAP_0613	-	tRNA (uracil-5-)-methyltransferase Gid
582	 18.94	-1	729282..730358	+	358	83319734	-	MCAP_0614	-	hypothetical protein
583	 19.58	-1	730500..730739	-	79	83319846	-	MCAP_0615	-	hypothetical protein
584	 26.83	0	730932..731777	-	281	83319504	-	MCAP_0616	-	fructose/tagatose bisphosphate aldolase, class II
585	 23.54	0	731978..732712	+	244	83319550	-	MCAP_0617	-	DeoR family transcriptional regulator
586	 23.95	0	732721..734607	+	628	83319908	-	MCAP_0618	-	PTS system, IIBC components, putative
587	 22.82	0	734620..735561	+	313	83319290	-	MCAP_0619	-	1-phosphofructokinase
588	 21.07	0	735640..737490	-	616	83319735	-	MCAP_0620	-	hypothetical protein
589	 20.33	0	738045..738590	-	181	83319917	-	MCAP_0621	-	hypothetical protein
590	 21.76	0	740123..741652	+	509	83319884	-	MCAP_0622	-	hypothetical protein
591	 27.18	0	741987..743822	+	611	83319447	-	MCAP_0623	-	metallo-beta-lactamase superfamily protein
592	 22.75	0	743900..744853	+	317	83319571	-	MCAP_0624	-	hypothetical protein
593	 20.48	0	745896..747140	+	414	83319341	-	MCAP_0625	-	hypothetical protein
594	 23.50	0	747406..748809	+	467	83319444	-	MCAP_0626	-	hypothetical protein
595	 21.35	0	749130..750881	+	583	83320017	-	MCAP_0627	-	hypothetical protein
596	 24.07	0	750894..751562	+	222	83319458	-	MCAP_0628	-	hypothetical protein
597	 45.06	+2	751744..752391	+	215	83319937	-	MCAP_0629	-	lipoprotein (VmcE)
598	 42.75	+2	753218..753748	+	176	83319556	-	MCAP_0630	-	lipoprotein (VmcF)
599	 27.49	0	753818..755032	-	404	83319915	pgk	MCAP_0631	-	phosphoglycerate kinase
600	 28.42	+1	755160..756176	-	338	83320051	gap	MCAP_0632	-	glyceraldehyde-3-phosphate dehydrogenase
601	 19.23	-1	756269..757204	-	311	83319318	-	MCAP_0633	-	hypothetical protein
602	 19.24	-1	757214..758398	-	394	83319403	-	MCAP_0634	-	hypothetical protein
603	 22.18	0	758556..759380	-	274	83319527	mutM	MCAP_0635	-	formamidopyrimidine-DNA glycosylase
604	 21.09	0	759391..762126	-	911	83319510	polA	MCAP_0636	-	DNA polymerase I
605	 19.55	-1	762135..765095	-	986	83319615	dnaE	MCAP_0637	-	DNA-directed DNA polymerase III (polc)
606	 21.39	0	765267..767921	+	884	83319315	-	MCAP_0638	-	hypothetical protein
607	 24.58	0	768010..769254	-	414	83319274	tyrS	MCAP_0639	-	tyrosyl-tRNA synthetase
608	 25.99	0	769262..770323	-	353	83319385	-	MCAP_0640	-	nicotinate phosphoribosyltransferase
609	 24.17	0	770301..770933	-	210	83319951	-	MCAP_0641	-	methionyl/phenylalanyl tRNA synthetase domain-containing protein
610	 26.31	0	770984..771823	+	279	83320049	-	MCAP_0642	-	hypothetical protein
611	 25.12	0	771834..772685	+	283	83319590	-	MCAP_0643	-	degV family protein
612	 19.66	-1	772982..773449	-	155	83319836	-	MCAP_0646	-	FUR family transcriptional regulator
613	 25.68	0	773451..773672	-	73	83319519	-	MCAP_0647	-	acyl carrier protein, putative
614	 18.97	-1	773693..774061	-	122	83319259	-	MCAP_0648	-	putative lipoprotein
615	 17.23	-1	774048..775115	-	355	83319476	-	MCAP_0649	-	hypothetical protein
616	 29.26	+1	775419..776351	-	310	83319524	arcC	MCAP_0651	-	carbamate kinase
617	 30.96	+1	776470..777564	-	364	83319708	-	MCAP_0652	-	agmatine deiminase
618	 27.91	0	777571..778989	-	472	83319362	-	MCAP_0653	-	amino acid permease family protein
619	 29.87	+1	779011..780108	-	365	83319535	argF	MCAP_0654	-	putrescine carbamoyltransferase
620	 22.52	0	780339..781226	+	295	83319711	-	MCAP_0655	-	ABC transporter, ATP-binding protein
621	 20.13	0	781228..781992	+	254	83319830	-	MCAP_0656	-	ABC transporter permease
622	 22.50	0	782026..782505	-	159	83319926	-	MCAP_0657	-	hypothetical protein
623	 24.97	0	782589..784154	-	521	83319998	-	MCAP_0658	-	hypothetical protein
624	 26.50	0	784221..786635	-	804	83319332	leuS	MCAP_0659	-	leucyl-tRNA synthetase
625	 20.85	0	786903..789746	-	947	83319643	-	MCAP_0661	-	putative lipoprotein
626	 33.33	+2	789908..790306	-	132	83319563	rpsI	MCAP_0662	-	30S ribosomal protein S9
627	 29.17	+1	790306..790761	-	151	83319647	rplM	MCAP_0663	-	50S ribosomal protein L13
628	 20.82	0	790881..795026	-	1381	83319508	-	MCAP_0664	-	hypothetical protein
629	 20.00	-1	795151..795900	-	249	83320035	truA	MCAP_0665	-	tRNA pseudouridine synthase A
630	 25.22	0	795902..796912	-	336	83319897	-	MCAP_0666	-	cobalt ABC transporter, permease protein
631	 26.55	0	796925..797794	-	289	83319301	-	MCAP_0667	-	cobalt transporter ATP-binding subunit
632	 24.94	0	797821..799047	-	408	83319389	-	MCAP_0668	-	cobalt transporter ATP-binding subunit
633	 28.33	+1	799158..799517	-	119	83319893	rplQ	MCAP_0669	-	50S ribosomal protein L17
634	 27.46	0	799537..800490	-	317	83319728	rpoA	MCAP_0670	-	DNA-directed RNA polymerase subunit alpha
635	 36.41	+2	800494..800883	-	129	83319613	rpsK	MCAP_0671	-	30S ribosomal protein S11
636	 29.78	+1	800909..801274	-	121	83319525	rpsM	MCAP_0672	-	30S ribosomal protein S13
637	 35.09	+2	801312..801425	-	37	83319430	rpmJ	MCAP_0673	-	50S ribosomal protein L36
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.