IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
397	 24.36	0	507977..508600	+	207	83319803	udk	MCAP_0422	-	uridine kinase
398	 19.97	-1	508728..509954	+	408	83319646	-	MCAP_0423	-	ImpB/MucB/SamB family protein
399	 19.20	-1	509967..511070	-	367	83319349	-	MCAP_0424	-	hypothetical protein
400	 17.48	-1	511079..511999	-	306	83319410	-	MCAP_0425	-	hypothetical protein
401	 18.63	-1	512075..512890	+	271	83319427	-	MCAP_0426	-	hypothetical protein
402	 24.16	0	512935..514296	-	453	83319314	-	MCAP_0427	-	dihydrolipoamide dehydrogenase
403	 18.00	-1	515351..515911	-	186	83319351	ruvA	MCAP_0429	-	Holliday junction DNA helicase ruvA, putative
404	 29.09	+1	516022..516186	-	54	162316929	rpsU	MCAP_0430	-	30S ribosomal protein S21
405	 25.87	0	516454..517083	+	209	83319364	-	MCAP_0431	-	putative lipoprotein
406	 25.28	0	517320..518039	+	239	83319990	-	MCAP_0432	-	putative lipoprotein
407	 24.88	0	518278..518916	+	212	83319705	-	MCAP_0433	-	putative lipoprotein
408	 19.38	-1	518964..520697	-	577	83319690	-	MCAP_0434	-	hypothetical protein
409	 19.96	-1	520850..522502	+	550	83320040	-	MCAP_0435	-	hypothetical protein
410	 14.83	-2	522507..523106	+	199	83319494	-	MCAP_0436	-	hypothetical protein
411	 18.77	-1	523118..523927	-	269	83319776	-	MCAP_0437	-	hypothetical protein
412	 22.37	0	524021..525178	+	385	83319687	nagA	MCAP_0438	-	N-acetylglucosamine-6-phosphate deacetylase
413	 30.71	+1	525231..526184	+	317	83319961	ldh	MCAP_0439	-	L-lactate/malate dehydrogenase
414	 22.47	0	526250..526912	-	220	83320009	-	MCAP_0440	-	hypothetical protein
415	 25.87	0	527269..527469	-	66	83319348	-	MCAP_0441	-	hypothetical protein
416	 24.38	0	527481..528965	-	494	83319272	-	MCAP_0442	-	putative lipoprotein
417	 22.71	0	529220..529492	+	90	83319497	-	MCAP_0443	-	hypothetical protein
418	 25.68	0	529607..530716	+	369	83319953	-	MCAP_0444	-	hypothetical protein
419	 23.18	0	530742..531539	-	265	83320055	-	MCAP_0445	-	triacylglycerol lipase
420	 24.71	0	531553..532341	-	262	83319797	-	MCAP_0446	-	triacylglycerol lipase, putative
421	 23.19	0	532528..532872	+	114	83319901	-	MCAP_0447	-	glycine cleavage system H protein, putative
422	 19.60	-1	532879..533730	+	283	83319543	-	MCAP_0448	-	hypothetical protein
423	 25.14	0	533708..534745	+	345	83319826	-	MCAP_0449	-	lipoate-protein ligase
424	 25.11	0	534745..535923	+	392	83319344	-	MCAP_0450	-	NADH:flavin oxidoreductase/NADH oxidase family protein
425	 27.07	0	536187..538070	-	627	83319979	-	MCAP_0451	-	lipoprotein, putative (LppB)
426	 18.91	-1	538184..538987	-	267	83319874	gtsC	MCAP_0452	-	glycerol ABC transporter, permease
427	 18.51	-1	538965..539969	-	334	83319767	gtsB	MCAP_0453	-	glycerol ABC transporter, permease
428	 19.64	-1	539962..541173	-	403	83319663	gtsA	MCAP_0454	-	glycerol ABC transporter, ATP-binding protein
429	 19.99	-1	541179..543374	-	731	83319614	-	MCAP_0455	-	RecD/TraA family helicase
430	 22.89	0	543485..546184	-	899	83319790	parC	MCAP_0456	-	DNA topoisomerase IV, A subunit
431	 26.19	0	546186..548117	-	643	83319442	parE	MCAP_0457	-	DNA topoisomerase IV, B subunit
432	 27.63	0	548347..549924	+	525	83319987	-	MCAP_0458	-	PTS system, mannitol-specific IIBC component
433	 20.63	0	549927..550367	+	146	83319579	-	MCAP_0459	-	PTS system, mannitol-specific IIA component
434	 27.11	0	550367..551266	+	299	83319446	-	MCAP_0460	-	6-phosphogluconate dehydrogenase-like protein
435	 27.47	0	551321..552736	-	471	83319779	-	MCAP_0461	-	aldehyde dehydrogenase (NAD) family protein
436	 25.26	0	552903..553670	-	255	83319453	-	MCAP_0462	-	RNA methyltransferase
437	 17.66	-1	553687..554190	-	167	83319664	-	MCAP_0463	-	hypothetical protein
438	 24.83	0	554231..554677	-	148	83319773	-	MCAP_0464	-	hypothetical protein
439	 25.55	0	554703..555986	-	427	83319876	pgi	MCAP_0465	-	glucose-6-phosphate isomerase
440	 22.78	0	556207..558102	-	631	83319496	pepO	MCAP_0466	-	endopeptidase O
441	 18.07	-1	558116..558685	-	189	83319768	-	MCAP_0467	-	5-formyltetrahydrofolate cyclo-ligase
442	 20.32	0	558678..559115	-	145	83320031	-	MCAP_0468	-	hypothetical protein
443	 22.60	0	559119..560357	-	412	83319944	-	MCAP_0469	-	aminotransferase, class V
444	 25.78	0	560551..563544	+	997	83319431	-	MCAP_0470	-	putative lipoprotein
445	 24.63	0	563566..565737	+	723	83319261	-	MCAP_0471	-	putative lipoprotein
446	 20.71	0	565740..566135	+	131	83319570	-	MCAP_0472	-	HIT family protein
447	 22.53	0	566171..567151	-	326	83319859	-	MCAP_0473	-	hypothetical protein
448	 20.85	0	567220..567876	-	218	83319985	ung	MCAP_0474	-	uracil-DNA glycosylase
449	 23.55	0	567869..568798	-	309	83319703	pmi	MCAP_0475	-	phosphomannose isomerase type I
450	 25.28	0	568919..570235	-	438	83319822	gid	MCAP_0476	-	tRNA (uracil-5-)-methyltransferase Gid
451	 23.54	0	570228..570911	-	227	83319533	-	MCAP_0477	-	copper homeostasis protein CutC, putative
452	 26.63	0	570902..572065	-	387	83319655	metK	MCAP_0478	-	S-adenosylmethionine synthetase
453	 25.97	0	572276..573049	-	257	83319258	-	MCAP_0479	-	hypothetical protein
454	 17.84	-1	573037..573378	-	113	83319384	p13	MCAP_0480	-	UPF0122 protein, putative
455	 24.24	0	573362..574636	-	424	83319748	ftsY	MCAP_0481	-	signal recognition particle-docking protein FtsY
456	 23.81	0	574705..575376	-	223	83319786	-	MCAP_0482	-	phosphate transport system regulatory protein PhoU, putative
457	 26.42	0	575385..576194	-	269	83319542	pstB	MCAP_0483	-	phosphate ABC transporter, ATP-binding protein
458	 22.14	0	576187..578277	-	696	83319640	-	MCAP_0484	-	phosphate ABC transporter, permease, putative
459	 21.78	0	578281..579492	-	403	83319693	-	MCAP_0485	-	phosphate ABC transporter, phosphate-binding protein, putative
460	 18.16	-1	579583..580017	-	144	83319383	-	MCAP_0486	-	hypothetical protein
461	 30.30	+1	580246..580443	-	65	83319933	rpmB	MCAP_0488	-	50S ribosomal protein L28
462	 26.36	0	580603..580932	+	109	83319555	-	MCAP_0489	-	hypothetical protein
463	 26.40	0	580962..582605	+	547	83319282	-	MCAP_0490	-	dihydroxyacetone kinase 2 domain-containing protein
464	 26.67	0	582637..583641	+	334	83319479	plsX	MCAP_0491	-	putative glycerol-3-phosphate acyltransferase PlsX
465	 24.46	0	583631..584329	+	232	83319588	-	MCAP_0492	-	ribonuclease III
466	 29.29	+1	584513..584908	+	131	83319679	-	MCAP_0493	-	hypothetical protein
467	 23.26	0	584911..585297	+	128	83319800	-	MCAP_0494	-	hypothetical protein
468	 25.21	0	585624..588590	+	988	83319729	-	MCAP_0495	-	structural maintenance of chromosomes (SMC) superfamily protein
469	 24.33	0	588629..590893	-	754	83319815	-	MCAP_0496	-	RelA/SpoT family protein
470	 25.54	0	590953..591465	-	170	83319437	apt	MCAP_0497	-	adenine phosphoribosyltransferase
471	 21.30	0	591477..595691	-	1404	83319955	-	MCAP_0498	-	hypothetical protein
472	 22.82	0	595793..597304	-	503	83319610	-	MCAP_0499	-	hypothetical protein
473	 21.29	0	597343..598704	-	453	83319293	-	MCAP_0500	-	DEAD-box ATP dependent DNA helicase
474	 17.50	-1	598713..599489	-	258	83319709	-	MCAP_0501	-	hypothetical protein
475	 19.32	-1	599476..600153	-	225	83319817	-	MCAP_0502	-	hypothetical protein
476	 26.68	0	600156..601673	-	505	83319868	rpoD	MCAP_0503	-	RNA polymerase sigma factor RpoD
477	 20.44	0	601676..603490	-	604	83319946	dnaG	MCAP_0504	-	DNA primase
478	 24.36	0	603527..604897	-	456	83319862	glyS	MCAP_0505	-	glycyl-tRNA synthetase
479	 18.27	-1	604961..605710	-	249	83319326	-	MCAP_0506	-	DNA repair protein RecO
480	 21.96	0	605710..606615	-	301	83319405	era	MCAP_0507	-	GTP-binding protein Era
481	 20.81	0	606618..607112	-	164	83319995	-	MCAP_0508	-	hypothetical protein
482	 15.19	-2	607118..609007	-	629	83319878	-	MCAP_0509	-	peptidase C39 family protein
483	 25.50	0	609000..609548	-	182	83319368	-	MCAP_0510	-	DJ-1 family protein
484	 21.47	0	609596..614857	-	1753	83319322	-	MCAP_0511	-	hypothetical protein
485	 23.44	0	617508..619751	+	747	83319406	-	MCAP_0513	-	putative lipoprotein
486	 22.94	0	619809..622079	+	756	83319880	-	MCAP_0514	-	putative lipoprotein
487	 23.89	0	622111..623349	-	412	83319965	-	MCAP_0515	-	recombination factor protein RarA
488	 26.84	0	623462..625801	-	779	83319891	lon	MCAP_0516	-	ATP-dependent protease La
489	 25.02	0	625920..627206	-	428	83319723	tig	MCAP_0517	-	trigger factor
490	 19.80	-1	627223..627525	-	100	83319794	-	MCAP_0518	-	hypothetical protein
491	 30.09	+1	627543..628097	-	184	83319745	efp	MCAP_0519	-	translation elongation factor P
492	 23.38	0	628187..629140	-	317	83319576	fmt	MCAP_0520	-	methionyl-tRNA formyltransferase
493	 20.65	0	629130..631274	-	714	83319463	-	MCAP_0521	-	hypothetical protein
494	 23.30	0	631351..631968	-	205	83319952	-	MCAP_0522	-	hypothetical protein
495	 23.40	0	632010..633137	-	375	83319617	trmU	MCAP_0523	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
496	 22.26	0	633233..634117	-	294	83320054	-	MCAP_0524	-	putative lipoprotein
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.