IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
357	 17.00	-1	460546..461151	+	201	83319256	-	MCAP_0373	-	hypothetical protein
358	 27.17	0	461283..461996	+	237	83319388	pyrH	MCAP_0374	-	uridylate kinase
359	 25.14	0	462007..462555	+	182	83319658	frr	MCAP_0375	-	ribosome recycling factor
360	 23.36	0	462557..464221	+	554	83319739	argS	MCAP_0376	-	arginyl-tRNA synthetase
361	 20.49	0	469387..473832	+	1481	83319964	-	MCAP_0381	-	hypothetical protein
362	 15.11	-2	473844..474452	+	202	83319969	-	MCAP_0382	-	hypothetical protein
363	 22.32	0	474483..475535	+	350	83319370	pheS	MCAP_0383	-	phenylalanyl-tRNA synthetase, alpha subunit
364	 18.87	-1	475544..477928	+	794	83319488	pheT	MCAP_0384	-	phenylalanyl-tRNA synthetase, beta subunit
365	 19.38	-1	477928..478443	+	171	83319758	-	MCAP_0385	-	hypothetical protein
366	 31.11	+1	478458..478637	+	59	83319397	rpmF	MCAP_0386	-	50S ribosomal protein L32
367	 23.06	0	478742..479140	+	132	83319903	-	MCAP_0387	-	cell division protein MraZ
368	 23.87	0	479149..480078	+	309	83319603	mraW	MCAP_0388	-	S-adenosyl-methyltransferase MraW
369	 16.67	-1	480087..481244	+	385	83319280	-	MCAP_0389	-	hypothetical protein
370	 30.09	+1	481359..482498	+	379	83319750	ftsZ	MCAP_0390	-	cell division protein FtsZ
371	 19.14	-1	482511..482954	+	147	83319461	-	MCAP_0391	-	hypothetical protein
372	 20.61	0	482987..483976	+	329	83319292	-	MCAP_0392	-	hypothetical protein
373	 24.97	0	484559..487285	+	908	83319396	ileS	MCAP_0393	-	isoleucyl-tRNA synthetase
374	 21.35	0	487294..487902	+	202	83319849	lspA	MCAP_0394	-	signal peptidase (SPase) II
375	 24.05	0	487883..488851	+	322	83319260	-	MCAP_0395	-	ribosomal large subunit pseudouridine synthase A
376	 21.82	0	488835..490145	+	436	83319827	-	MCAP_0396	-	hypothetical protein
377	 26.84	0	490172..490633	+	153	83319549	-	MCAP_0397	-	deoxycytidylate deaminase
378	 20.35	0	490673..491827	+	384	83319976	-	MCAP_0398	-	hypothetical protein
379	 24.82	0	491908..493293	+	461	83319851	-	MCAP_0399	-	hypothetical protein
380	 21.02	0	493313..493645	+	110	83319324	-	MCAP_0400	-	holo-(acyl-carrier-protein) synthase, putative
381	 23.78	0	493687..494838	+	383	83320014	-	MCAP_0401	-	hypothetical protein
382	 24.42	0	494973..495926	+	317	83319707	-	MCAP_0402	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
383	 19.09	-1	495977..496594	+	205	83319633	-	MCAP_0403	-	hypothetical protein
384	 25.26	0	497250..498314	-	354	83319936	-	MCAP_0409	-	putative lipoprotein
385	 20.20	0	498691..499581	+	296	83319469	-	MCAP_0410	-	hypothetical protein
386	 25.62	0	499603..500004	+	133	83319657	-	MCAP_0411	-	hypothetical protein
387	 28.38	+1	500149..500451	+	100	83319974	rplU	MCAP_0412	-	50S ribosomal protein L21
388	 22.22	0	500454..500768	+	104	83320038	-	MCAP_0413	-	hypothetical protein
389	 31.21	+1	500770..501051	+	93	83319594	rpmA	MCAP_0414	-	50S ribosomal protein L27
390	 26.01	0	501245..502132	+	295	83319454	nanA	MCAP_0415	-	N-acetylneuraminate lyase
391	 23.76	0	502136..503848	+	570	83319608	-	MCAP_0416	-	sodium/solute symporter family protein
392	 20.00	-1	503857..504306	+	149	83319313	-	MCAP_0417	-	hypothetical protein
393	 20.21	0	504299..505174	+	291	83319464	-	MCAP_0418	-	ROK family protein
394	 26.58	0	505254..505934	+	226	83319759	-	MCAP_0419	-	N-acetylmannosamine-6-phosphate 2-epimerase
395	 25.93	0	506088..507437	+	449	83319943	-	MCAP_0420	-	dipeptidase, putative
396	 20.92	0	507518..507952	+	144	83319980	-	MCAP_0421	-	hypothetical protein
397	 24.36	0	507977..508600	+	207	83319803	udk	MCAP_0422	-	uridine kinase
398	 19.97	-1	508728..509954	+	408	83319646	-	MCAP_0423	-	ImpB/MucB/SamB family protein
399	 19.20	-1	509967..511070	-	367	83319349	-	MCAP_0424	-	hypothetical protein
400	 17.48	-1	511079..511999	-	306	83319410	-	MCAP_0425	-	hypothetical protein
401	 18.63	-1	512075..512890	+	271	83319427	-	MCAP_0426	-	hypothetical protein
402	 24.16	0	512935..514296	-	453	83319314	-	MCAP_0427	-	dihydrolipoamide dehydrogenase
403	 18.00	-1	515351..515911	-	186	83319351	ruvA	MCAP_0429	-	Holliday junction DNA helicase ruvA, putative
404	 29.09	+1	516022..516186	-	54	162316929	rpsU	MCAP_0430	-	30S ribosomal protein S21
405	 25.87	0	516454..517083	+	209	83319364	-	MCAP_0431	-	putative lipoprotein
406	 25.28	0	517320..518039	+	239	83319990	-	MCAP_0432	-	putative lipoprotein
407	 24.88	0	518278..518916	+	212	83319705	-	MCAP_0433	-	putative lipoprotein
408	 19.38	-1	518964..520697	-	577	83319690	-	MCAP_0434	-	hypothetical protein
409	 19.96	-1	520850..522502	+	550	83320040	-	MCAP_0435	-	hypothetical protein
410	 14.83	-2	522507..523106	+	199	83319494	-	MCAP_0436	-	hypothetical protein
411	 18.77	-1	523118..523927	-	269	83319776	-	MCAP_0437	-	hypothetical protein
412	 22.37	0	524021..525178	+	385	83319687	nagA	MCAP_0438	-	N-acetylglucosamine-6-phosphate deacetylase
413	 30.71	+1	525231..526184	+	317	83319961	ldh	MCAP_0439	-	L-lactate/malate dehydrogenase
414	 22.47	0	526250..526912	-	220	83320009	-	MCAP_0440	-	hypothetical protein
415	 25.87	0	527269..527469	-	66	83319348	-	MCAP_0441	-	hypothetical protein
416	 24.38	0	527481..528965	-	494	83319272	-	MCAP_0442	-	putative lipoprotein
417	 22.71	0	529220..529492	+	90	83319497	-	MCAP_0443	-	hypothetical protein
418	 25.68	0	529607..530716	+	369	83319953	-	MCAP_0444	-	hypothetical protein
419	 23.18	0	530742..531539	-	265	83320055	-	MCAP_0445	-	triacylglycerol lipase
420	 24.71	0	531553..532341	-	262	83319797	-	MCAP_0446	-	triacylglycerol lipase, putative
421	 23.19	0	532528..532872	+	114	83319901	-	MCAP_0447	-	glycine cleavage system H protein, putative
422	 19.60	-1	532879..533730	+	283	83319543	-	MCAP_0448	-	hypothetical protein
423	 25.14	0	533708..534745	+	345	83319826	-	MCAP_0449	-	lipoate-protein ligase
424	 25.11	0	534745..535923	+	392	83319344	-	MCAP_0450	-	NADH:flavin oxidoreductase/NADH oxidase family protein
425	 27.07	0	536187..538070	-	627	83319979	-	MCAP_0451	-	lipoprotein, putative (LppB)
426	 18.91	-1	538184..538987	-	267	83319874	gtsC	MCAP_0452	-	glycerol ABC transporter, permease
427	 18.51	-1	538965..539969	-	334	83319767	gtsB	MCAP_0453	-	glycerol ABC transporter, permease
428	 19.64	-1	539962..541173	-	403	83319663	gtsA	MCAP_0454	-	glycerol ABC transporter, ATP-binding protein
429	 19.99	-1	541179..543374	-	731	83319614	-	MCAP_0455	-	RecD/TraA family helicase
430	 22.89	0	543485..546184	-	899	83319790	parC	MCAP_0456	-	DNA topoisomerase IV, A subunit
431	 26.19	0	546186..548117	-	643	83319442	parE	MCAP_0457	-	DNA topoisomerase IV, B subunit
432	 27.63	0	548347..549924	+	525	83319987	-	MCAP_0458	-	PTS system, mannitol-specific IIBC component
433	 20.63	0	549927..550367	+	146	83319579	-	MCAP_0459	-	PTS system, mannitol-specific IIA component
434	 27.11	0	550367..551266	+	299	83319446	-	MCAP_0460	-	6-phosphogluconate dehydrogenase-like protein
435	 27.47	0	551321..552736	-	471	83319779	-	MCAP_0461	-	aldehyde dehydrogenase (NAD) family protein
436	 25.26	0	552903..553670	-	255	83319453	-	MCAP_0462	-	RNA methyltransferase
437	 17.66	-1	553687..554190	-	167	83319664	-	MCAP_0463	-	hypothetical protein
438	 24.83	0	554231..554677	-	148	83319773	-	MCAP_0464	-	hypothetical protein
439	 25.55	0	554703..555986	-	427	83319876	pgi	MCAP_0465	-	glucose-6-phosphate isomerase
440	 22.78	0	556207..558102	-	631	83319496	pepO	MCAP_0466	-	endopeptidase O
441	 18.07	-1	558116..558685	-	189	83319768	-	MCAP_0467	-	5-formyltetrahydrofolate cyclo-ligase
442	 20.32	0	558678..559115	-	145	83320031	-	MCAP_0468	-	hypothetical protein
443	 22.60	0	559119..560357	-	412	83319944	-	MCAP_0469	-	aminotransferase, class V
444	 25.78	0	560551..563544	+	997	83319431	-	MCAP_0470	-	putative lipoprotein
445	 24.63	0	563566..565737	+	723	83319261	-	MCAP_0471	-	putative lipoprotein
446	 20.71	0	565740..566135	+	131	83319570	-	MCAP_0472	-	HIT family protein
447	 22.53	0	566171..567151	-	326	83319859	-	MCAP_0473	-	hypothetical protein
448	 20.85	0	567220..567876	-	218	83319985	ung	MCAP_0474	-	uracil-DNA glycosylase
449	 23.55	0	567869..568798	-	309	83319703	pmi	MCAP_0475	-	phosphomannose isomerase type I
450	 25.28	0	568919..570235	-	438	83319822	gid	MCAP_0476	-	tRNA (uracil-5-)-methyltransferase Gid
451	 23.54	0	570228..570911	-	227	83319533	-	MCAP_0477	-	copper homeostasis protein CutC, putative
452	 26.63	0	570902..572065	-	387	83319655	metK	MCAP_0478	-	S-adenosylmethionine synthetase
453	 25.97	0	572276..573049	-	257	83319258	-	MCAP_0479	-	hypothetical protein
454	 17.84	-1	573037..573378	-	113	83319384	p13	MCAP_0480	-	UPF0122 protein, putative
455	 24.24	0	573362..574636	-	424	83319748	ftsY	MCAP_0481	-	signal recognition particle-docking protein FtsY
456	 23.81	0	574705..575376	-	223	83319786	-	MCAP_0482	-	phosphate transport system regulatory protein PhoU, putative
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.