IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
261	 25.12	0	338352..338984	+	210	83319845	-	MCAP_0275	-	hypothetical protein
262	 33.52	+2	339294..339815	+	173	83319673	-	MCAP_0276	-	hypothetical protein
263	 23.46	0	339845..340249	+	134	83319701	-	MCAP_0277	-	plasmid replication-initiation protein
264	 19.05	-1	340321..340929	+	202	83319630	-	MCAP_0278	-	hypothetical protein
265	 24.27	0	340973..341833	+	286	83319516	-	MCAP_0279	-	hypothetical protein
266	 21.33	0	342147..342296	+	49	83319428	-	MCAP_0280	-	hypothetical protein
267	 25.57	0	342461..342769	+	102	83319433	-	MCAP_0281	-	single-strand binding protein family
268	 23.35	0	342820..343560	+	246	83319475	-	MCAP_0282	-	hypothetical protein
269	 21.76	0	343562..343777	+	71	83319562	-	MCAP_0283	-	hypothetical protein
270	 18.59	-1	343855..344736	+	293	83319371	-	MCAP_0284	-	hypothetical protein
271	 19.02	-1	344834..345322	+	162	83319257	-	MCAP_0285	-	hypothetical protein
272	 19.30	-1	345374..345943	+	189	83319367	-	MCAP_0286	-	hypothetical protein
273	 29.79	+1	346021..346839	+	272	83319861	-	MCAP_0287	-	putative lipoprotein
274	 26.00	0	346886..347458	+	190	83319966	-	MCAP_0288	-	hypothetical protein
275	 27.17	0	347716..348396	+	226	83319740	-	MCAP_0289	-	hypothetical protein
276	 23.74	0	348460..348876	+	138	83319791	-	MCAP_0290	-	hypothetical protein
277	 24.04	0	348951..349499	+	182	83319321	-	MCAP_0291	-	hypothetical protein
278	 26.56	0	349555..350307	+	250	83319636	-	MCAP_0292	-	hypothetical protein
279	 25.53	0	350364..351119	+	251	83319408	-	MCAP_0293	-	hypothetical protein
280	 20.10	0	351168..351779	+	203	83319733	-	MCAP_0294	-	hypothetical protein
281	 21.50	0	351830..352243	+	137	83319820	-	MCAP_0295	-	hypothetical protein
282	 18.53	-1	352322..353125	+	267	83319585	-	MCAP_0296	-	hypothetical protein
283	 18.98	-1	353126..353794	+	222	83319273	-	MCAP_0297	-	adenine-specific DNA methylase, putative
284	 16.27	-1	353798..354178	+	126	83319363	-	MCAP_0298	-	hypothetical protein
285	 23.60	0	354758..359698	+	1646	83319865	-	MCAP_0299	-	hypothetical protein
286	 29.32	+1	360401..361894	-	497	83319882	-	MCAP_0300	-	hypothetical protein
287	 21.90	0	362143..364599	-	818	83319712	-	MCAP_0301	-	hypothetical protein
288	 29.81	+1	364659..365339	-	226	83319818	-	MCAP_0302	-	hypothetical protein
289	 22.45	0	366143..366730	-	195	83319515	-	MCAP_0303	-	hypothetical protein
290	 26.13	0	366730..368646	-	638	83319337	-	MCAP_0304	-	E3 binding domain-containing protein
291	 24.55	0	368903..370393	-	496	83320036	-	MCAP_0305	-	hypothetical protein
292	 26.48	0	370524..370844	-	106	83319919	-	MCAP_0306	-	hypothetical protein
293	 23.94	0	371320..372405	-	361	83319526	-	MCAP_0307	-	hypothetical protein
294	 25.82	0	372470..373015	-	181	83319684	-	MCAP_0308	-	hypothetical protein
295	 30.75	+1	373077..374006	-	309	83319306	-	MCAP_0309	-	hypothetical protein
296	 30.45	+1	374061..374963	-	300	83319628	-	MCAP_0310	-	hypothetical protein
297	 29.12	+1	375026..375997	-	323	83319573	-	MCAP_0311	-	hypothetical protein
298	 24.73	0	376060..377175	-	371	83319853	-	MCAP_0312	-	putative lipoprotein
299	 21.51	0	377232..377510	-	92	83319387	hupB	MCAP_0313	-	DNA-binding protein, HU
300	 24.64	0	377579..378211	-	210	83320065	-	MCAP_0314	-	hypothetical protein
301	 19.27	-1	378592..379707	+	371	83319713	-	MCAP_0315	-	IS3 family transposase
302	 19.34	-1	380492..381184	+	230	83319763	-	MCAP_0317	-	hypothetical protein
303	 24.42	0	381165..382589	+	474	162316930	proS	MCAP_0318	-	prolyl-tRNA synthetase
304	 21.74	0	382602..383222	+	206	83319587	-	MCAP_0319	-	ribonuclease H1, putative
305	 15.11	-2	383224..384123	+	299	83319424	-	MCAP_0320	-	hypothetical protein
306	 27.12	0	384137..385939	+	600	83319434	lepA	MCAP_0321	-	GTP-binding protein LepA
307	 22.51	0	385973..386776	+	267	83319589	-	MCAP_0322	-	hypothetical protein
308	 24.65	0	386797..388524	-	575	83319674	aspS	MCAP_0323	-	aspartyl-tRNA synthetase
309	 22.57	0	388533..389777	-	414	83319312	hisS	MCAP_0324	-	histidyl-tRNA synthetase
310	 22.32	0	389949..390302	+	117	83319338	rbfA	MCAP_0325	-	ribosome-binding factor A
311	 20.59	0	390352..391230	+	292	83319374	-	MCAP_0326	-	tRNA pseudouridine synthase B, putative
312	 17.66	-1	391217..391771	+	184	83319941	-	MCAP_0327	-	riboflavin kinase domain-containing protein
313	 21.18	0	391784..393832	-	682	83319972	-	MCAP_0328	-	hypothetical protein
314	 18.76	-1	393844..395682	-	612	83319670	-	MCAP_0329	-	putative lipoprotein
315	 24.72	0	395895..396161	+	88	83319798	rpsO	MCAP_0330	-	30S ribosomal protein S15
316	 16.28	-1	396385..397035	+	216	83319456	-	MCAP_0332	-	hypothetical protein
317	 27.75	0	397049..398911	-	620	83319583	infB	MCAP_0333	-	translation initiation factor IF-2
318	 23.33	0	398931..399230	-	99	83319415	-	MCAP_0334	-	ribosomal protein L7A family protein
319	 21.18	0	399217..399504	-	95	83319398	-	MCAP_0335	-	hypothetical protein
320	 24.93	0	399479..401155	-	558	83319641	nusA	MCAP_0336	-	transcription elongation factor NusA
321	 20.61	0	401164..401658	-	164	83319689	-	MCAP_0337	-	hypothetical protein
322	 23.40	0	401771..402394	-	207	83319910	-	MCAP_0338	-	nitroreductase family protein
323	 23.94	0	402434..406873	-	1479	83319984	polC	MCAP_0339	-	DNA polymerase III, alpha subunit
324	 20.21	0	406882..407910	-	342	83319347	cdsA	MCAP_0340	-	phosphatidate cytidylyltransferase
325	 25.53	0	408108..409184	-	358	83319612	-	MCAP_0341	-	Xaa-Pro peptidase
326	 24.83	0	409342..410352	+	336	83319724	trpS	MCAP_0342	-	tryptophanyl-tRNA synthetase
327	 19.87	-1	410382..411272	-	296	83319766	-	MCAP_0343	-	hypothetical protein
328	 20.53	0	411606..412175	+	189	83319886	-	MCAP_0344	-	Fic family protein
329	 27.30	0	412795..415050	+	751	83320046	-	MCAP_0345	-	hypothetical protein
330	 25.18	0	415071..417659	+	862	83319263	-	MCAP_0346	-	putative lipoprotein
331	 26.28	0	417869..420121	+	750	83319546	-	MCAP_0347	-	hypothetical protein
332	 25.23	0	420139..422718	+	859	83319626	-	MCAP_0348	-	putative lipoprotein
333	 26.71	0	422903..425152	+	749	83319956	-	MCAP_0349	-	hypothetical protein
334	 25.43	0	425172..427751	+	859	83319681	-	MCAP_0350	-	putative lipoprotein
335	 28.01	0	428011..430263	+	750	83319325	-	MCAP_0351	-	hypothetical protein
336	 25.43	0	430287..432854	+	855	83319949	-	MCAP_0352	-	putative lipoprotein
337	 19.06	-1	432889..434352	+	487	83319499	-	MCAP_0353	-	hypothetical protein
338	 20.20	0	434327..434821	+	164	83319918	-	MCAP_0354	-	hypothetical protein
339	 17.87	-1	434823..435734	+	303	83319680	-	MCAP_0355	-	hypothetical protein
340	 17.12	-1	435734..436177	+	147	83319308	-	MCAP_0356	-	hypothetical protein
341	 24.34	0	436179..438446	+	755	83319895	-	MCAP_0357	-	hypothetical protein
342	 24.94	0	438451..439998	+	515	83319286	atpA2	MCAP_0358	-	F0F1 ATP synthase subunit alpha
343	 26.52	0	439998..441377	+	459	83319416	atpD2	MCAP_0359	-	F0F1 ATP synthase subunit beta
344	 22.36	0	441432..443936	-	834	83319350	-	MCAP_0360	-	hypothetical protein
345	 22.30	0	444199..446745	-	848	83319607	-	MCAP_0361	-	hypothetical protein
346	 21.09	0	446899..449406	-	835	83319780	-	MCAP_0362	-	hypothetical protein
347	 21.50	0	449586..450185	+	199	83319285	-	MCAP_0363	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
348	 25.46	0	450199..450744	+	181	83319378	-	MCAP_0364	-	RNA methyltransferase
349	 21.11	0	450744..451610	+	288	83319438	-	MCAP_0365	-	HAD superfamily hydrolase
350	 26.80	0	451775..453916	+	713	83319920	-	MCAP_0366	-	ATP-dependent Clp protease, ATP-binding subunit ClpB, putative
351	 21.51	0	453921..454943	+	340	83319975	hrcA	MCAP_0367	-	heat-inducible transcription repressor HrcA
352	 23.03	0	454927..455547	+	206	83319669	grpE	MCAP_0368	-	co-chaperone GrpE
353	 29.22	+1	455607..457382	+	591	83319686	dnaK	MCAP_0369	-	chaperone protein dnaK
354	 23.59	0	457447..458565	+	372	83319522	dnaJ	MCAP_0370	-	chaperone protein dnaJ
355	 28.31	+1	458769..459644	+	291	83319465	rpsB	MCAP_0371	-	30S ribosomal protein S2
356	 27.59	0	459656..460543	+	295	83319962	tsf	MCAP_0372	-	elongation factor Ts
357	 17.00	-1	460546..461151	+	201	83319256	-	MCAP_0373	-	hypothetical protein
358	 27.17	0	461283..461996	+	237	83319388	pyrH	MCAP_0374	-	uridylate kinase
359	 25.14	0	462007..462555	+	182	83319658	frr	MCAP_0375	-	ribosome recycling factor
360	 23.36	0	462557..464221	+	554	83319739	argS	MCAP_0376	-	arginyl-tRNA synthetase
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.