IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
169	 22.12	0	219507..219827	+	106	83319774	-	MCAP_0180	-	hypothetical protein
170	 24.31	0	219869..220444	+	191	83319445	-	MCAP_0181	-	hypothetical protein
171	 19.60	-1	220472..221119	+	215	83319288	-	MCAP_0182	-	adenine-specific DNA methylase, putative
172	 16.90	-1	221144..221575	+	143	83319382	-	MCAP_0183	-	hypothetical protein
173	 25.07	0	221642..222379	+	245	83319821	-	MCAP_0184	-	hypothetical protein
174	 26.09	0	222379..222585	+	68	83319913	-	MCAP_0185	-	hypothetical protein
175	 27.13	0	222935..225676	+	913	83319629	-	MCAP_0186	-	hypothetical protein
176	 20.71	0	226062..227186	+	374	83319721	-	MCAP_0187	-	IS3 family transposase
177	 25.97	0	228765..229850	+	361	83319699	-	MCAP_0189	-	multiple sugar ABC transporter, ATP-binding protein
178	 23.63	0	229949..232246	+	765	83320019	-	MCAP_0190	-	glycosy hydrolase family protein
179	 24.49	0	232248..233852	+	534	83319866	-	MCAP_0191	-	glycosy hydrolase family protein
180	 20.56	0	233874..234593	+	239	83319991	-	MCAP_0192	-	GntR family transcriptional regulator
181	 24.08	0	234626..236419	-	597	83319855	-	MCAP_0193	-	oligoendopeptidase F
182	 22.08	0	236419..237102	-	227	83319720	-	MCAP_0194	-	hypothetical protein
183	 26.77	0	237118..238473	-	451	83319645	pepA2	MCAP_0195	-	cytosol aminopeptidase
184	 21.84	0	238589..239884	-	431	83319537	-	MCAP_0196	-	hypothetical protein
185	 23.51	0	240127..240747	+	206	83319604	-	MCAP_0197	-	chromate transporter
186	 24.34	0	240747..241424	+	225	83320041	-	MCAP_0198	-	chromate transporter
187	 22.33	0	242913..246038	-	1041	83319667	-	MCAP_0200	-	spermidine/putrescine ABC transporter, permease protein and spermidine/putrescine-binding protein
188	 26.08	0	246023..247015	-	330	83319963	-	MCAP_0201	-	spermidine/putrescine ABC transporter, permease protein
189	 26.80	0	247015..248070	-	351	83319839	-	MCAP_0202	-	spermidine/putrescine ABC transporter, ATP-binding protein
190	 27.50	0	248432..248791	-	119	83319552	rplT	MCAP_0203	-	50S ribosomal protein L20
191	 29.17	+1	248810..249001	-	63	83319631	rpmI	MCAP_0204	-	50S ribosomal protein L35
192	 26.92	0	249027..249572	-	181	83319316	infC	MCAP_0205	-	translation initiation factor IF-3
193	 24.21	0	249761..250363	-	200	83319871	def	MCAP_0206	-	polypeptide deformylase
194	 18.82	-1	250437..250994	+	185	83319982	-	MCAP_0207	-	methyltransferase, putative
195	 24.83	0	250997..251890	+	297	83320000	gmk	MCAP_0208	-	guanylate kinase
196	 20.05	0	251853..253139	+	428	83319809	-	MCAP_0209	-	rRNA methyltransferase RsmB (sun protein), putative
197	 26.99	0	253143..254972	-	609	83319795	typA	MCAP_0210	-	GTP-binding protein TypA/BipA
198	 27.65	0	255250..256059	+	269	83320016	-	MCAP_0211	-	putative lipoprotein
199	 21.80	0	256070..256867	+	265	83319421	-	MCAP_0212	-	putative lipoprotein
200	 29.72	+1	256990..258345	+	451	83319528	eno	MCAP_0213	-	enolase
201	 19.59	-1	258411..259232	+	273	83319575	-	MCAP_0214	-	PAP2 superfamily domain-containing protein
202	 23.61	0	259234..259665	+	143	83319719	-	MCAP_0215	-	holliday junction resolvase, putative
203	 26.18	0	259671..260243	+	190	83319716	hpt1	MCAP_0216	-	hypoxanthine phosphoribosyltransferase
204	 33.85	+2	260290..261069	-	259	83319518	-	MCAP_0217	-	glycerol uptake facilitator protein
205	 29.97	+1	261105..262622	-	505	83319894	glpK	MCAP_0218	-	glycerol kinase
206	 30.50	+1	262639..263802	-	387	83319339	-	MCAP_0219	-	glycerol-3-phosphate dehydrogenase, putative
207	 30.38	+1	264143..265123	+	326	83319678	pfkA	MCAP_0220	-	phosphofructokinase
208	 27.91	0	265192..266628	+	478	83319452	pyk	MCAP_0221	-	pyruvate kinase
209	 23.54	0	266899..268818	+	639	83319726	thrS	MCAP_0222	-	threonyl-tRNA synthetase
210	 30.04	+1	269448..270812	+	454	83319295	-	MCAP_0223	-	NADH oxidase
211	 26.87	0	270824..271828	+	334	83319395	-	MCAP_0224	-	lipoate-protein ligase
212	 30.19	+1	271863..272975	+	370	83319466	pdhA	MCAP_0225	-	pyruvate dehydrogenase complex, EI component, alpha subunit
213	 32.83	+2	272975..273964	+	329	83319905	pdhB	MCAP_0226	-	pyruvate dehydrogenase complex, E1 component, beta subunit
214	 32.19	+2	273993..275309	+	438	83319741	pdhC	MCAP_0227	-	branched-chain alpha-keto acid dehydrogenase subunit E2
215	 31.32	+1	275328..277217	+	629	83319618	pdhD	MCAP_0228	-	dihydrolipoamide dehydrogenase
216	 27.24	0	277239..278207	+	322	83319483	pta	MCAP_0229	-	phosphate acetyltransferase
217	 26.06	0	278221..279402	+	393	83319412	ackA	MCAP_0230	-	acetate kinase
218	 21.80	0	279470..281437	+	655	83319472	-	MCAP_0231	-	putative lipoprotein
219	 21.75	0	281447..281869	+	140	83319935	coaD	MCAP_0232	-	pantetheine-phosphate adenylyltransferase
220	 26.66	0	281962..283683	+	573	83319559	ptsI	MCAP_0233	-	phosphoenolpyruvate-protein phosphotransferase
221	 29.46	+1	283765..284229	+	154	83319491	crr	MCAP_0234	-	PTS system, glucose-specific IIA component
222	 27.59	0	284721..285347	+	208	83319954	-	MCAP_0235	-	dihydroxyacetone kinase family protein
223	 26.92	0	285355..285744	+	129	83319970	-	MCAP_0236	-	hypothetical protein
224	 26.48	0	285801..286427	-	208	83319988	rpsD	MCAP_0237	-	30S ribosomal protein S4
225	 17.56	-1	286682..288469	+	595	83319932	-	MCAP_0238	-	hypothetical protein
226	 22.31	0	288478..289665	+	395	83319792	thiI	MCAP_0239	-	thiamine biosynthesis protein ThiI
227	 21.51	0	289797..291767	+	656	83319648	-	MCAP_0240	-	hypothetical protein
228	 18.97	-1	291884..293554	+	556	83319568	-	MCAP_0241	-	hypothetical protein
229	 20.66	0	293564..295852	+	762	83319400	-	MCAP_0242	-	putative lipoprotein
230	 27.57	0	296087..298150	+	687	83319353	-	MCAP_0243	-	regulatory protein PfoR
231	 25.79	0	298176..301091	-	971	83319459	-	MCAP_0244	-	cation transporter E1-E2 family ATPase
232	 22.67	0	301100..301690	-	196	83319725	-	MCAP_0245	-	GTPase EngB
233	 15.86	-2	301684..302244	-	186	83319833	-	MCAP_0246	-	hypothetical protein
234	 17.62	-1	302246..302824	-	192	83319789	-	MCAP_0247	-	hypothetical protein
235	 17.83	-1	302827..303516	-	229	83319864	-	MCAP_0248	-	hypothetical protein
236	 16.67	-1	303598..304293	+	231	83319305	-	MCAP_0249	-	hypothetical protein
237	 26.42	0	304294..305016	-	240	83319566	-	MCAP_0250	-	short chain dehydrogenase/reductase family oxidoreductase
238	 27.64	0	305075..305548	-	157	83319925	greA	MCAP_0251	-	transcription elongation factor GreA
239	 21.20	0	305640..307394	-	584	83319764	uvrC	MCAP_0252	-	excinuclease ABC, C subunit
240	 18.57	-1	307403..308479	-	358	83319704	-	MCAP_0253	-	hypothetical protein
241	 26.66	0	310275..312026	-	583	83319270	-	MCAP_0255	-	hypothetical protein
242	 26.67	0	312145..312864	-	239	83319377	-	MCAP_0256	-	short chain dehydrogenase/reductase family oxidoreductase
243	 22.18	0	312876..313673	-	265	83319993	-	MCAP_0257	-	inorganic polyphosphate/ATP-NAD kinase, putative
244	 22.87	0	313797..316415	-	872	83319485	valS	MCAP_0258	-	valyl-tRNA synthetase
245	 21.37	0	316500..317126	-	208	83319805	-	MCAP_0259	-	hypothetical protein
246	 22.86	0	317116..317793	-	225	83319580	rpe	MCAP_0260	-	ribulose-phosphate 3-epimerase
247	 21.26	0	317795..318697	-	300	83319551	rsgA	MCAP_0261	-	ribosome small subunit-dependent GTPase A
248	 21.42	0	318707..319822	-	371	83319436	-	MCAP_0262	-	serine/threonine protein kinase, putative
249	 20.83	0	319822..320085	-	87	83319668	-	MCAP_0263	-	hypothetical protein
250	 22.16	0	320054..320581	-	175	83320005	-	MCAP_0264	-	hypothetical protein
251	 17.13	-1	320611..322023	-	470	83319751	-	MCAP_0265	-	hypothetical protein
252	 18.47	-1	322126..322542	+	138	83320050	-	MCAP_0266	-	hypothetical protein
253	 17.02	-1	322544..323107	+	187	83319754	-	MCAP_0267	-	metalloendopeptidase, putative
254	 26.11	0	323167..324522	-	451	83319816	-	MCAP_0268	-	putative lipoprotein
255	 25.72	0	324791..326143	-	450	83319470	-	MCAP_0269	-	putative lipoprotein
256	 21.24	0	326350..331656	-	1768	83319606	-	MCAP_0270	-	ABC transporter, permease protein, putative
257	 20.81	0	331924..335061	+	1045	83319602	-	MCAP_0271	-	hypothetical protein
258	 22.16	0	335085..335603	+	172	83320048	-	MCAP_0272	-	putative lipoprotein
259	 24.07	0	335689..336228	+	179	83320023	-	MCAP_0273	-	putative lipoprotein
260	 25.61	0	336621..337358	+	245	83319945	-	MCAP_0274	-	hypothetical protein
261	 25.12	0	338352..338984	+	210	83319845	-	MCAP_0275	-	hypothetical protein
262	 33.52	+2	339294..339815	+	173	83319673	-	MCAP_0276	-	hypothetical protein
263	 23.46	0	339845..340249	+	134	83319701	-	MCAP_0277	-	plasmid replication-initiation protein
264	 19.05	-1	340321..340929	+	202	83319630	-	MCAP_0278	-	hypothetical protein
265	 24.27	0	340973..341833	+	286	83319516	-	MCAP_0279	-	hypothetical protein
266	 21.33	0	342147..342296	+	49	83319428	-	MCAP_0280	-	hypothetical protein
267	 25.57	0	342461..342769	+	102	83319433	-	MCAP_0281	-	single-strand binding protein family
268	 23.35	0	342820..343560	+	246	83319475	-	MCAP_0282	-	hypothetical protein
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.