IslandPath Analysis: Mycoplasma capricolum subsp. capricolum ATCC 27343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 24.05   STD DEV: 4.02
Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome - 1..1010023
812 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
70	 29.71	+1	91782..93023	+	413	83319931	glyA	MCAP_0075	-	serine hydroxymethyltransferase
71	 30.29	+1	93125..93748	+	207	83319896	upp	MCAP_0076	-	uracil phosphoribosyltransferase
72	 19.55	-1	93889..94287	+	132	83319999	-	MCAP_0077	-	hypothetical protein
73	 23.93	0	94287..95147	+	286	83319402	atpB	MCAP_0078	-	F0F1 ATP synthase subunit A
74	 31.37	+1	95186..95491	+	101	83319513	atpE	MCAP_0079	-	ATP synthase F0, subunit c
75	 23.99	0	95519..96064	+	181	83319804	atpF	MCAP_0080	-	ATP synthase F0, B subunit
76	 21.79	0	96066..96611	+	181	83319489	atpH	MCAP_0081	-	F0F1 ATP synthase subunit delta
77	 29.85	+1	96623..98200	+	525	83319474	atpA1	MCAP_0082	-	F0F1 ATP synthase subunit alpha
78	 23.37	0	98202..99044	+	280	83319574	atpG	MCAP_0083	-	F0F1 ATP synthase subunit gamma
79	 30.33	+1	99053..100483	+	476	83319730	atpD1	MCAP_0084	-	F0F1 ATP synthase subunit beta
80	 22.33	0	100483..100782	+	99	83320026	atpC	MCAP_0085	-	ATP synthase F1, epsilon subunit
81	 22.44	0	100840..102051	-	403	83319904	-	MCAP_0086	-	hypothetical protein
82	 26.12	0	102390..105218	+	942	83319358	mgtA	MCAP_0087	-	magnesium-translocating P-type ATPase
83	 17.78	-1	105679..105813	-	44	83319328	-	MCAP_0088	-	hypothetical protein
84	 29.79	+1	105998..107209	+	403	83319656	arcA	MCAP_0089	-	arginine deiminase
85	 30.72	+1	107227..108222	+	331	83319698	arcB	MCAP_0090	-	ornithine carbamoyltransferase, catabolic
86	 29.46	+1	108285..109754	+	489	83319593	-	MCAP_0091	-	transporter, putative
87	 21.99	0	111276..112403	-	375	83319262	-	MCAP_0093	-	beta-lactamase, putative
88	 31.07	+1	112508..114721	-	737	83319967	ptsG	MCAP_0094	-	PTS system, glucose-specific IIABC component
89	 19.43	-1	115141..115629	-	162	83319512	-	MCAP_0095	-	hypothetical protein
90	 19.69	-1	115629..116075	-	148	83319425	smpB	MCAP_0096	-	SsrA-binding protein
91	 21.28	0	116085..118199	-	704	83319777	-	MCAP_0097	-	3'-5' exoribonuclease
92	 24.93	0	118235..118591	-	118	83319671	secG	MCAP_0098	-	preprotein translocase subunit SecG
93	 28.53	+1	118773..119792	+	339	83319806	nrdF	MCAP_0099	-	ribonucleotide-diphosphate reductase subunit beta
94	 27.00	0	119802..120275	+	157	83319863	nrdI	MCAP_0100	-	ribonucleotide reductase stimulatory protein
95	 27.18	0	120262..122424	+	720	83319418	nrdE	MCAP_0101	-	ribonucleotide-diphosphate reductase subunit alpha
96	 29.66	+1	122709..123743	+	344	83320003	prs	MCAP_0104	-	phosphoribosylpyrophosphate synthase
97	 19.96	-1	124048..124608	+	186	83320028	pth	MCAP_0105	-	peptidyl-tRNA hydrolase
98	 23.20	0	124739..125182	+	147	83319898	rplI	MCAP_0106	-	50S ribosomal protein L9
99	 27.46	0	125184..126512	+	442	83319407	dnaC	MCAP_0107	-	replicative DNA helicase
100	 22.88	0	126601..127863	+	420	83319523	-	MCAP_0108	-	hypothetical protein
101	 25.35	0	127990..128916	+	308	83319622	-	MCAP_0109	-	hypothetical protein
102	 20.29	0	128925..130250	+	441	83319731	cysS	MCAP_0110	-	cysteinyl-tRNA synthetase
103	 21.63	0	130252..130986	+	244	83319473	-	MCAP_0111	-	RNA methyltransferase
104	 28.40	+1	131047..131208	+	53	83319914	rpmG	MCAP_0112	-	50S ribosomal protein L33
105	 21.27	0	131208..131522	+	104	83320011	secE	MCAP_0113	-	preprotein translocase, SecE subunit, putative
106	 28.53	+1	131539..132183	+	214	83319581	nusG	MCAP_0114	-	transcription antitermination protein NusG
107	 24.84	0	132631..138528	+	1965	83319484	-	MCAP_0115	-	hypothetical protein
108	 25.75	0	138537..141491	+	984	83319343	-	MCAP_0116	-	oligopeptide ABC transporter, oligopeptide-binding protein, putative
109	 26.07	0	141491..142564	+	357	83319676	-	MCAP_0117	-	oligopeptide ABC transporter, permease protein
110	 25.12	0	142566..143576	+	336	83319997	-	MCAP_0118	-	oligopeptide ABC transporter, permease protein
111	 26.49	0	143655..145028	+	457	83319554	-	MCAP_0119	-	oligopeptide ABC transporter, ATP-binding protein
112	 25.28	0	145104..146357	+	417	83319311	-	MCAP_0120	-	oligopeptide ABC transporter, ATP-binding protein
113	 15.85	-2	146389..146817	-	142	83319856	-	MCAP_0121	-	hypothetical protein
114	 24.10	0	146872..147651	+	259	83319906	-	MCAP_0122	-	hypothetical protein
115	 25.86	0	147705..149243	+	512	83319480	-	MCAP_0123	-	ABC transporter, ATP-binding protein
116	 25.94	0	149275..150072	-	265	83319824	-	MCAP_0124	-	TatD family hydrolase
117	 26.24	0	150259..151485	+	408	83319702	ilvA	MCAP_0125	-	threonine dehydratase
118	 24.91	0	151701..153290	+	529	83319391	-	MCAP_0126	-	hypothetical protein
119	 20.95	0	153295..154158	+	287	83319514	-	MCAP_0127	-	hypothetical protein
120	 24.09	0	154353..155120	+	255	162316927	nagB	MCAP_0128	-	glucosamine-6-phosphate deaminase
121	 27.51	0	155124..156806	+	560	83320032	-	MCAP_0129	-	PTS system, N-acetylglucosamine-specific IIBC component, putative
122	 23.55	0	156937..158388	+	483	83320024	gltX	MCAP_0130	-	glutamyl-tRNA synthetase
123	 26.03	0	159630..160067	+	145	83319457	-	MCAP_0132	-	DNA-directed RNA polymerase, delta subunit, putative
124	 26.77	0	160160..161758	+	532	83319784	pyrG	MCAP_0133	-	CTP synthetase
125	 31.01	+1	162260..163033	+	257	83319691	-	MCAP_0134	-	hypothetical protein
126	 27.28	0	163048..164022	+	324	83319923	-	MCAP_0135	-	hypothetical protein
127	 31.10	+1	164174..165067	+	297	83319873	fba	MCAP_0136	-	fructose-1,6-bisphosphate aldolase, class II
128	 27.44	0	165285..166778	-	497	83319320	-	MCAP_0137	-	hypothetical protein
129	 28.31	+1	166983..168434	+	483	83319449	-	MCAP_0138	-	hypothetical protein
130	 22.59	0	168519..169235	+	238	83319738	-	MCAP_0139	-	glycerophosphoryl diester phosphodiesterase family protein
131	 32.62	+2	169372..169650	+	92	83319835	rpmE	MCAP_0140	-	50S ribosomal protein L31
132	 21.00	0	169725..171653	+	642	83319848	-	MCAP_0141	-	hypothetical protein
133	 23.24	0	171663..172613	+	316	83319541	-	MCAP_0142	-	DHH phosphoesterase family protein, putative
134	 26.35	0	172616..173245	+	209	83319659	tdk	MCAP_0143	-	thymidine kinase
135	 28.57	+1	173248..174339	+	363	83319336	prfA	MCAP_0144	-	peptide chain release factor 1
136	 18.82	-1	174332..175144	+	270	83319283	-	MCAP_0145	-	HemK family modification methylase
137	 18.33	-1	175190..176662	+	490	83319538	-	MCAP_0146	-	hypothetical protein
138	 19.36	-1	176671..177171	+	166	83319443	-	MCAP_0147	-	hypothetical protein
139	 22.22	0	177239..178192	+	317	83319267	-	MCAP_0148	-	hypothetical protein
140	 14.41	-2	178316..179023	+	235	83320063	-	MCAP_0149	-	hypothetical protein
141	 20.85	0	179023..180552	+	509	83319330	-	MCAP_0150	-	cardiolipin synthetase, putative
142	 34.29	+2	180676..181095	+	139	162316928	rpsL	MCAP_0151	-	30S ribosomal protein S12
143	 27.35	0	181185..181652	+	155	83319930	rpsG	MCAP_0152	-	30S ribosomal protein S7
144	 31.98	+1	181679..183748	+	689	83319565	fusA	MCAP_0153	-	elongation factor G
145	 35.77	+2	183880..185067	+	395	83319675	tuf	MCAP_0154	-	elongation factor Tu
146	 27.74	0	185190..187031	+	613	83319654	-	MCAP_0155	-	PTS system, IIBC component, putative
147	 23.50	0	187015..189282	+	755	83320029	-	MCAP_0156	-	isoglycosyl hydrolase family protein
148	 28.98	+1	189469..190824	+	451	83319471	pepA1	MCAP_0157	-	cytosol aminopeptidase
149	 24.08	0	192390..195080	-	896	83319899	alaS	MCAP_0159	-	alanyl-tRNA synthetase
150	 18.18	-1	195149..195643	-	164	83319810	-	MCAP_0160	-	hypothetical protein
151	 27.55	0	195862..197106	+	414	83319342	-	MCAP_0161	-	oligopeptide ABC transporter, permease protein, putative
152	 26.41	0	197122..198132	+	336	83320012	-	MCAP_0162	-	oligopeptide ABC transporter, permease protein, putative
153	 25.51	0	198146..199846	+	566	83319727	-	MCAP_0163	-	oligopeptide ABC transporter, ATP-binding protein
154	 25.40	0	199848..201725	+	625	83319578	-	MCAP_0164	-	oligopeptide ABC transporter, ATP-binding protein
155	 26.83	0	201742..204849	+	1035	83319441	-	MCAP_0165	-	oligopeptide ABC transporter, oligopeptide-binding protein, putative
156	 19.61	-1	204948..205049	+	33	83319938	-	MCAP_0166	-	truncated membrane protein
157	 21.43	0	205361..206965	+	534	83320033	-	MCAP_0167	-	hypothetical protein
158	 19.85	-1	207895..209073	+	392	83319892	-	MCAP_0168	-	hypothetical protein
159	 24.37	0	209054..209689	+	211	83319986	-	MCAP_0169	-	hypothetical protein
160	 27.89	0	209791..210543	+	250	83319682	-	MCAP_0170	-	hypothetical protein
161	 25.19	0	210593..211243	+	216	83319847	-	MCAP_0171	-	hypothetical protein
162	 22.98	0	211364..212194	+	276	83319639	-	MCAP_0172	-	putative lipoprotein
163	 29.51	+1	212404..212691	+	95	83319644	-	MCAP_0173	-	hypothetical protein
164	 20.53	0	213766..214179	+	137	83319409	-	MCAP_0175	-	hypothetical protein
165	 21.37	0	214289..214405	-	38	83319569	-	MCAP_0176	-	hypothetical protein
166	 24.87	0	214527..214916	+	129	83319373	-	MCAP_0177	-	hypothetical protein
167	 26.19	0	215059..216234	+	391	83320057	-	MCAP_0178	-	hypothetical protein
168	 23.92	0	216319..219186	+	955	83319660	-	MCAP_0179	-	membrane bound ATPase, putative
169	 22.12	0	219507..219827	+	106	83319774	-	MCAP_0180	-	hypothetical protein
24.05	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.