IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.70   STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
49	 71.83	0	53514..54230	+	238	188579335	-	Mpop_0049	-	malonate decarboxylase, gamma subunit
50	 73.48	0	54223..54882	+	219	188579336	-	Mpop_0050	-	hypothetical protein
51	 76.66	+1	54879..55739	+	286	188579337	-	Mpop_0051	-	triphosphoribosyl-dephospho-CoA synthase MdcB
52	 76.41	+1	55736..56659	+	307	188579338	-	Mpop_0052	-	acyl transferase domain protein
53	 69.99	0	56876..59161	+	761	188579339	-	Mpop_0053	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
54	 72.08	0	59272..60711	-	479	188579340	-	Mpop_0054	-	transcriptional regulator, GntR family with aminotransferase domain
55	 64.18	-1	61075..61557	+	160	188579341	-	Mpop_0055	-	hypothetical protein
56	 69.73	0	61617..62693	+	358	188579342	-	Mpop_0056	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
57	 70.92	0	62647..63750	+	367	188579343	-	Mpop_0057	-	Radical SAM domain protein
58	 71.45	0	63750..64292	+	180	188579344	-	Mpop_0058	-	GCN5-related N-acetyltransferase
59	 72.89	0	64292..65287	+	331	188579345	-	Mpop_0059	-	AIR synthase related protein
60	 71.81	0	65284..65808	+	174	188579346	-	Mpop_0060	-	glycosyltransferase
61	 72.70	0	65805..66980	+	391	188579347	-	Mpop_0061	-	glycosyl transferase group 1
62	 69.15	0	66973..67254	+	93	188579348	-	Mpop_0062	-	hypothetical protein
63	 67.30	0	67293..68561	+	422	188579349	-	Mpop_0063	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
64	 64.10	-1	68909..70000	-	363	188579350	-	Mpop_0064	-	hypothetical protein
65	 64.88	-1	70091..71155	-	354	188579351	-	Mpop_0065	-	hypothetical protein
66	 66.67	0	71625..71999	-	124	188579352	-	Mpop_0066	-	Glyoxalase/bleomycin resistance protein/dioxygenase
67	 69.45	0	72889..74469	+	526	188579353	-	Mpop_0067	-	integrase family protein
68	 69.84	0	74624..75001	+	125	188579354	-	Mpop_0068	-	metallophosphoesterase
69	 67.13	0	75117..76625	+	502	188579355	-	Mpop_0069	-	Integrase catalytic region
70	 66.53	0	76625..77356	+	243	188579356	-	Mpop_0070	-	IstB domain protein ATP-binding protein
71	 76.92	+1	77731..78003	+	90	188579357	-	Mpop_0072	-	hypothetical protein
72	 73.60	0	78000..78965	-	321	188579358	-	Mpop_0073	-	hypothetical protein
73	 75.89	+1	78965..79246	-	93	188579359	-	Mpop_0074	-	hypothetical protein
74	 70.56	0	79246..79836	-	196	188579360	-	Mpop_0075	-	hypothetical protein
75	 73.62	0	79926..80990	-	354	188579361	-	Mpop_0076	-	hypothetical protein
76	 74.90	+1	81085..81339	-	84	188579362	-	Mpop_0077	-	hypothetical protein
77	 74.68	+1	81378..81851	-	157	188579363	-	Mpop_0078	-	hypothetical protein
78	 72.85	0	81865..82866	-	333	188579364	-	Mpop_0079	-	HIRAN
79	 74.21	+1	82877..83194	-	105	188579365	-	Mpop_0080	-	hypothetical protein
80	 75.69	+1	83191..83445	-	84	188579366	-	Mpop_0081	-	hypothetical protein
81	 74.33	+1	83756..84616	+	286	188579367	-	Mpop_0082	-	hypothetical protein
82	 74.46	+1	84669..85502	+	277	188579368	-	Mpop_0083	-	hypothetical protein
83	 73.97	+1	85582..85896	-	104	188579369	-	Mpop_0084	-	hypothetical protein
84	 70.89	0	86830..87303	-	157	188579370	-	Mpop_0085	-	hypothetical protein
85	 74.50	+1	87578..89620	+	680	188579371	-	Mpop_0086	-	hypothetical protein
86	 72.90	0	90386..91123	+	245	188579372	-	Mpop_0088	-	TIR protein
87	 68.79	0	91288..92511	-	407	188579373	-	Mpop_0089	-	diguanylate cyclase
88	 69.01	0	92667..92879	+	70	188579374	-	Mpop_0090	-	hypothetical protein
89	 70.48	0	93093..95321	-	742	188579375	-	Mpop_0092	-	PAS/PAC sensor hybrid histidine kinase
90	 73.68	0	95330..95557	-	75	188579376	-	Mpop_0093	-	hypothetical protein
91	 71.51	0	95869..98658	+	929	188579377	-	Mpop_0094	-	signal transduction histidine kinase
92	 69.62	0	98948..99319	+	123	188579378	-	Mpop_0095	-	response regulator receiver protein
93	 70.66	0	99399..101624	-	741	188579379	-	Mpop_0096	-	multi-sensor hybrid histidine kinase
94	 71.57	0	101977..104139	-	720	188579380	-	Mpop_0097	-	integral membrane sensor hybrid histidine kinase
95	 70.69	0	104132..107284	-	1050	188579381	-	Mpop_0098	-	PAS/PAC sensor hybrid histidine kinase
96	 68.78	0	107288..107476	-	62	188579382	-	Mpop_0099	-	putative addiction module antidote protein, CopG/Arc/MetJ family
97	 75.16	+1	108270..108881	+	203	188579383	-	Mpop_0101	-	hypothetical protein
98	 68.68	0	109033..110376	-	447	188579384	-	Mpop_0102	-	transposase IS4 family protein
99	 72.96	0	110590..110748	+	52	188579385	-	Mpop_0103	-	hypothetical protein
100	 68.04	0	110767..110985	-	72	188579386	-	Mpop_0104	-	hypothetical protein
101	 67.87	0	111030..111779	-	249	188579387	-	Mpop_0105	-	integral membrane protein
102	 66.80	0	111776..112525	-	249	188579388	-	Mpop_0106	-	glutaredoxin
103	 66.97	0	112591..112923	-	110	188579389	-	Mpop_0107	-	hypothetical protein
104	 64.94	-1	113104..113508	-	134	188579390	-	Mpop_0108	-	protein of unknown function DUF305
105	 72.68	0	113532..113897	-	121	188579391	-	Mpop_0109	-	hypothetical protein
106	 70.00	0	113918..117067	-	1049	188579392	-	Mpop_0110	-	heavy metal efflux pump, CzcA family
107	 74.71	+1	117081..118820	-	579	188579393	-	Mpop_0111	-	efflux transporter, RND family, MFP subunit
108	 74.84	+1	118906..119370	-	154	188579394	-	Mpop_0112	-	hypothetical protein
109	 65.26	-1	119463..119675	-	70	188579395	-	Mpop_0113	-	Heavy metal transport/detoxification protein
110	 66.67	0	119816..120208	-	130	188579396	-	Mpop_0114	-	Rhodanese domain protein
111	 69.52	0	120214..121125	-	303	188579397	-	Mpop_0115	-	beta-lactamase domain protein
112	 72.24	0	121145..121951	-	268	188579398	-	Mpop_0116	-	protein of unknown function DUF81
113	 70.22	0	121951..122400	-	149	188579399	-	Mpop_0117	-	protein of unknown function DUF395 YeeE/YedE
114	 72.30	0	122404..122829	-	141	188579400	-	Mpop_0118	-	protein of unknown function DUF395 YeeE/YedE
115	 68.63	0	122993..123451	+	152	188579401	-	Mpop_0119	-	hypothetical protein
116	 68.17	0	123487..123951	-	154	188579402	-	Mpop_0120	-	protein of unknown function DUF1791
117	 71.85	0	123935..124783	-	282	188579403	-	Mpop_0121	-	ErfK/YbiS/YcfS/YnhG family protein
118	 69.50	0	124783..125418	-	211	188579404	-	Mpop_0122	-	DSBA oxidoreductase
119	 73.25	0	125452..127227	-	591	188579405	-	Mpop_0123	-	cytochrome c biogenesis protein transmembrane region
120	 72.10	0	127335..127997	+	220	188579406	-	Mpop_0124	-	two component transcriptional regulator, winged helix family
121	 70.54	0	127994..129310	+	438	188579407	-	Mpop_0125	-	integral membrane sensor signal transduction histidine kinase
122	 65.15	-1	129341..129538	-	65	188579408	-	Mpop_0126	-	hypothetical protein
123	 59.28	-2	129771..130244	+	157	188579409	-	Mpop_0127	-	hypothetical protein
124	 62.22	-1	130272..130451	-	59	188579410	-	Mpop_0128	-	hypothetical protein
125	 50.85	-2	130448..130978	-	176	188579411	-	Mpop_0129	-	hypothetical protein
126	 49.87	-2	130968..131747	-	259	188579412	-	Mpop_0130	-	hypothetical protein
127	 62.63	-1	131740..132681	-	313	188579413	-	Mpop_0131	-	ISSpo8, transposase
128	 67.90	0	132795..133118	-	107	188579414	-	Mpop_0132	-	transcriptional regulator, TrmB
129	 71.13	0	133779..134585	+	268	188579415	-	Mpop_0133	-	transcriptional regulator, Crp/Fnr family
130	 73.16	0	134596..136644	-	682	188579416	-	Mpop_0134	-	PAS/PAC sensor hybrid histidine kinase
131	 70.15	0	136641..138161	-	506	188579417	-	Mpop_0135	-	putative circadian clock protein, KaiC
132	 62.91	-1	138378..138590	+	70	188579418	-	Mpop_0136	-	hypothetical protein
133	 70.35	0	138622..139191	-	189	188579419	-	Mpop_0137	-	cytochrome B561
134	 75.81	+1	139188..140336	-	382	188579420	-	Mpop_0138	-	cyclic nucleotide-binding protein
135	 69.20	0	140596..141108	+	170	188579421	-	Mpop_0139	-	protein of unknown function DUF892
136	 73.44	0	141121..141312	+	63	188579422	-	Mpop_0140	-	hypothetical protein
137	 73.28	0	141454..143841	+	795	188579423	-	Mpop_0141	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
138	 75.73	+1	143915..144289	+	124	188579424	-	Mpop_0142	-	NADH dehydrogenase subunit G
139	 74.01	+1	144286..146028	+	580	188579425	-	Mpop_0143	-	methyl-accepting chemotaxis sensory transducer
140	 69.54	0	146067..148361	-	764	188579426	-	Mpop_0144	-	PAS/PAC sensor hybrid histidine kinase
141	 69.11	0	148925..150028	+	367	188579427	-	Mpop_0145	-	ribonuclease BN
142	 69.59	0	150096..154241	+	1381	188579428	-	Mpop_0146	-	multi-sensor hybrid histidine kinase
143	 72.22	0	154295..154546	-	83	188579429	-	Mpop_0147	-	response regulator receiver protein
144	 70.80	0	154558..157704	-	1048	188579430	-	Mpop_0148	-	response regulator receiver sensor signal transduction histidine kinase
145	 69.80	0	157808..160681	-	957	188579431	-	Mpop_0149	-	PAS/PAC sensor hybrid histidine kinase
146	 71.59	0	160747..162492	-	581	188579432	-	Mpop_0150	-	PAS/PAC sensor hybrid histidine kinase
147	 74.74	+1	162482..163162	-	226	188579433	-	Mpop_0151	-	PAS sensor protein
148	 73.89	+1	163311..163670	-	119	188579434	-	Mpop_0152	-	hypothetical protein
69.70	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.