IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.70   STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
809	 73.48	0	882357..883340	+	327	188580095	-	Mpop_0827	-	Asparaginase/glutaminase
810	 70.61	0	883528..884898	+	456	188580096	-	Mpop_0828	-	glutamate--cysteine ligase
811	 73.00	0	884942..886441	-	499	188580097	-	Mpop_0829	-	hypothetical protein
812	 72.54	0	886651..887076	+	141	188580098	-	Mpop_0830	-	hypothetical protein
813	 75.18	+1	887156..887437	+	93	188580099	-	Mpop_0831	-	SirA family protein
814	 71.43	0	887467..888033	+	188	188580100	-	Mpop_0832	-	NUDIX hydrolase
815	 70.37	0	888131..888265	+	44	188580101	-	Mpop_0833	-	hypothetical protein
816	 69.65	0	888447..888848	+	133	188580102	-	Mpop_0834	-	hypothetical protein
817	 74.83	+1	888954..889394	-	146	188580103	-	Mpop_0835	-	hypothetical protein
818	 71.24	0	889543..890307	-	254	188580104	-	Mpop_0836	-	porin
819	 71.88	0	890352..890543	-	63	188580105	-	Mpop_0837	-	hypothetical protein
820	 77.66	+1	890540..890812	-	90	188580106	-	Mpop_0838	-	hypothetical protein
821	 72.95	0	890971..891846	+	291	188580107	-	Mpop_0839	-	hypothetical protein
822	 77.65	+1	891843..893180	+	445	188580108	-	Mpop_0840	-	conserved hypothetical protein; putative signal peptide
823	 71.14	0	893187..893879	-	230	188580109	-	Mpop_0841	-	conserved hypothetical transmembrane signal peptide protein
824	 71.83	0	893876..894088	-	70	188580110	-	Mpop_0842	-	protein of unknown function DUF1289
825	 70.83	0	894150..894821	-	223	188580111	-	Mpop_0843	-	hypothetical protein
826	 67.69	0	894829..895317	-	162	188580112	-	Mpop_0844	-	hypothetical protein
827	 66.94	0	895314..895673	-	119	188580113	-	Mpop_0845	-	hypothetical protein
828	 75.97	+1	895754..896581	-	275	188580114	-	Mpop_0846	-	cobalamin 5'-phosphate synthase
829	 74.66	+1	896747..897784	+	345	188580115	-	Mpop_0847	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
830	 70.56	0	897791..899332	-	513	188580116	-	Mpop_0848	-	integral membrane sensor signal transduction histidine kinase
831	 68.64	0	899663..900118	+	151	188580117	-	Mpop_0849	-	(2Fe-2S)-binding domain protein
832	 71.99	0	900154..902349	+	731	188580118	-	Mpop_0850	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
833	 71.23	0	902515..905889	+	1124	188580119	-	Mpop_0851	-	signal transduction histidine kinase
834	 75.17	+1	905935..907239	-	434	188580120	-	Mpop_0852	-	Amidase
835	 71.06	0	907282..908259	+	325	188580121	-	Mpop_0853	-	Extensin family protein
836	 68.80	0	908495..908962	+	155	188580122	-	Mpop_0854	-	hypothetical protein
837	 70.09	0	909058..909729	+	223	188580123	-	Mpop_0855	-	ribonuclease T2
838	 72.00	0	910207..911013	+	268	188580124	-	Mpop_0856	-	protein of unknown function DUF519
839	 71.11	0	911041..911310	-	89	188580125	-	Mpop_0857	-	hypothetical protein
840	 70.56	0	911325..911555	-	76	188580126	-	Mpop_0858	-	hypothetical protein
841	 68.97	0	911665..913098	-	477	188580127	-	Mpop_0859	-	FAD linked oxidase domain protein
842	 65.01	-1	913462..913824	+	120	188580128	-	Mpop_0860	-	cytochrome c class I
843	 66.87	0	913922..914407	-	161	188580129	-	Mpop_0861	-	transcriptional regulator, MarR family
844	 73.23	0	914842..915450	-	202	188580130	-	Mpop_0862	-	hypothetical protein
845	 74.42	+1	915447..916130	-	227	188580131	-	Mpop_0863	-	protein of unknown function DUF1214
846	 68.20	0	916141..918423	-	760	188580132	-	Mpop_0864	-	penicillin-binding protein, 1A family
847	 71.40	0	918735..919199	+	154	188580133	-	Mpop_0865	-	protein of unknown function UPF0153
848	 75.34	+1	919232..919888	-	218	188580134	-	Mpop_0866	-	GCN5-related N-acetyltransferase
849	 59.06	-2	920168..920719	+	183	188580135	-	Mpop_0867	-	TadE family protein
850	 64.75	-1	920719..921552	+	277	188580136	-	Mpop_0868	-	TadE family protein
851	 60.74	-2	921537..922970	+	477	188580137	-	Mpop_0869	-	hypothetical protein
852	 71.19	0	923175..924389	+	404	188580138	-	Mpop_0870	-	AFG1-family ATPase
853	 75.82	+1	924489..925067	-	192	188580139	-	Mpop_0871	-	DNA-3-methyladenine glycosylase
854	 72.27	0	925088..925765	-	225	188580140	-	Mpop_0872	-	ribonuclease H
855	 71.57	0	925813..926607	-	264	188580141	-	Mpop_0873	-	hypothetical protein
856	 73.50	0	926607..926840	-	77	188580142	-	Mpop_0874	-	hypothetical protein
857	 69.90	0	927300..927608	+	102	188580143	-	Mpop_0875	-	hypothetical protein
858	 68.85	0	927831..928793	+	320	188580144	-	Mpop_0876	-	glutathione synthetase
859	 72.62	0	928905..929072	-	55	188580145	-	Mpop_0877	-	hypothetical protein
860	 72.81	0	929731..931308	-	525	188580146	-	Mpop_0878	-	sodium/hydrogen exchanger
861	 72.78	0	931401..932153	-	250	188580147	-	Mpop_0879	-	N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
862	 74.24	+1	932150..932875	-	241	188580148	-	Mpop_0880	-	heat shock protein DnaJ domain protein
863	 76.19	+1	933090..933383	-	97	188580149	-	Mpop_0881	-	hypothetical protein
864	 71.79	0	933591..934214	+	207	188580150	-	Mpop_0882	-	UreE urease accessory domain protein
865	 67.97	0	934335..934487	+	50	188580151	-	Mpop_0883	-	hypothetical protein
866	 73.13	0	934748..934948	+	66	188580152	-	Mpop_0884	-	hypothetical protein
867	 72.62	0	935222..936196	+	324	188580153	-	Mpop_0885	-	dihydrouridine synthase DuS
868	 72.35	0	936234..938291	-	685	188580154	-	Mpop_0886	-	diguanylate cyclase/phosphodiesterase
869	 65.56	-1	938402..938854	-	150	188580155	-	Mpop_0887	-	response regulator receiver protein
870	 64.53	-1	938915..939382	-	155	188580156	-	Mpop_0888	-	BLUF domain protein
871	 66.16	0	939628..941010	+	460	188580157	-	Mpop_0889	-	protein of unknown function DUF1078 domain protein
872	 72.20	0	941048..942946	+	632	188580158	-	Mpop_0890	-	flagellar hook-associated protein FlgK
873	 70.79	0	942961..944754	+	597	188580159	-	Mpop_0891	-	hypothetical protein
874	 72.46	0	944893..946170	-	425	188580160	-	Mpop_0892	-	hypothetical protein
875	 73.96	+1	946690..947580	-	296	188580161	-	Mpop_0893	-	protein-(glutamine-N5) methyltransferase, release factor-specific
876	 69.71	0	947618..948703	-	361	188580162	-	Mpop_0894	-	peptide chain release factor 1
877	 71.31	0	948780..951041	-	753	188580163	-	Mpop_0895	-	PTSINtr with GAF domain, PtsP
878	 67.72	0	951113..952348	-	411	188580164	-	Mpop_0896	-	aspartate kinase
879	 71.82	0	952526..953263	+	245	188580165	-	Mpop_0897	-	ubiquinone biosynthesis O-methyltransferase
880	 73.47	0	953322..953894	+	190	188580166	-	Mpop_0898	-	PEBP family protein
881	 71.25	0	954041..955021	+	326	188580167	-	Mpop_0899	-	Alcohol dehydrogenase zinc-binding domain protein
882	 67.65	0	955301..956314	+	337	188580168	-	Mpop_0900	-	Cytochrome-c peroxidase
883	 74.17	+1	956382..958034	+	550	188580169	-	Mpop_0901	-	methyl-accepting chemotaxis sensory transducer
884	 73.51	0	958049..958618	-	189	188580170	-	Mpop_0902	-	crossover junction endodeoxyribonuclease RuvC
885	 67.78	0	958708..959337	-	209	188580171	-	Mpop_0903	-	YceI family protein
886	 71.61	0	959425..960051	+	208	188580172	-	Mpop_0904	-	Holliday junction DNA helicase RuvA
887	 66.67	0	960057..960353	-	98	188580173	-	Mpop_0905	-	hypothetical protein
888	 55.64	-2	960431..960811	+	126	188580174	-	Mpop_0906	-	response regulator receiver protein
889	 70.52	0	960867..962240	+	457	188580175	-	Mpop_0907	-	response regulator receiver modulated diguanylate cyclase
890	 69.98	0	962248..962730	-	160	188580176	-	Mpop_0908	-	transcriptional regulator, BadM/Rrf2 family
891	 69.32	0	962825..964066	+	413	188580177	-	Mpop_0909	-	Oxidoreductase FAD-binding domain protein
892	 71.52	0	964095..964259	-	54	188580178	-	Mpop_0910	-	hypothetical protein
893	 77.27	+1	964292..964621	-	109	188580179	-	Mpop_0911	-	hypothetical protein
894	 71.88	0	964611..964994	-	127	188580180	-	Mpop_0912	-	hypothetical protein
895	 68.81	0	965187..966164	-	325	188580181	-	Mpop_0913	-	cysteine synthase A
896	 73.45	0	966503..966679	-	58	188580182	-	Mpop_0914	-	hypothetical protein
897	 67.86	0	966841..967344	-	167	188580183	-	Mpop_0915	-	protein of unknown function DUF306 Meta and HslJ
898	 71.87	0	967757..968083	+	108	188580184	-	Mpop_0916	-	putative transcriptional regulator, XRE family
899	 73.35	0	968093..969334	-	413	188580185	-	Mpop_0917	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
900	 70.61	0	969331..970320	-	329	188580186	-	Mpop_0918	-	transcriptional regulator, LysR family
901	 70.87	0	970528..971574	+	348	188580187	-	Mpop_0919	-	Inositol phosphatase/fructose-16-bisphosphatase
902	 65.74	0	971603..972463	+	286	188580188	-	Mpop_0920	-	Phosphoribulokinase
903	 69.38	0	972518..973477	-	319	188580189	-	Mpop_0921	-	hypothetical protein
904	 67.47	0	973679..974425	-	248	188580190	-	Mpop_0922	-	protein of unknown function DUF28
905	 71.09	0	974743..975555	-	270	188580191	-	Mpop_0923	-	beta-lactamase-like protein
906	 70.55	0	975983..976291	+	102	188580192	-	Mpop_0924	-	hypothetical protein
907	 74.70	+1	976302..977459	-	385	188580193	-	Mpop_0925	-	hypothetical protein
908	 74.87	+1	977456..978832	-	458	188580194	-	Mpop_0926	-	polysaccharide biosynthesis protein
69.70	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.