IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.70   STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
781	 71.70	0	857220..857636	-	138	188580067	-	Mpop_0799	-	methionine-R-sulfoxide reductase
782	 70.20	0	857742..858902	-	386	188580068	-	Mpop_0800	-	ribonuclease BN
783	 70.55	0	859051..860517	-	488	188580069	-	Mpop_0801	-	signal transduction histidine kinase
784	 69.08	0	860762..862294	-	510	188580070	-	Mpop_0802	-	AMP-dependent synthetase and ligase
785	 73.24	0	862457..862897	-	146	188580071	-	Mpop_0803	-	hypothetical protein
786	 74.39	+1	863233..864099	+	288	188580072	-	Mpop_0804	-	Collagen triple helix repeat
787	 75.02	+1	864107..865351	-	414	188580073	-	Mpop_0805	-	HI0933 family protein
788	 65.73	0	865631..866692	+	353	188580074	-	Mpop_0806	-	Integral membrane protein TerC
789	 73.33	0	866832..867131	+	99	188580075	-	Mpop_0807	-	hypothetical protein
790	 67.53	0	867238..867816	-	192	188580076	-	Mpop_0808	-	intracellular protease, PfpI family
791	 74.77	+1	867989..868210	+	73	188580077	-	Mpop_0809	-	hypothetical protein
792	 72.18	0	868387..868821	+	144	188580078	-	Mpop_0810	-	hypothetical protein
793	 70.77	0	868925..869314	-	129	188580079	-	Mpop_0811	-	hypothetical protein
794	 61.90	-1	869648..869857	+	69	188580080	-	Mpop_0812	-	cold-shock DNA-binding domain protein
795	 69.74	0	870052..870279	+	75	188580081	-	Mpop_0813	-	hypothetical protein
796	 70.52	0	870346..870786	-	146	188580082	-	Mpop_0814	-	hypothetical protein
797	 70.95	0	870891..872198	-	435	188580083	-	Mpop_0815	-	hypothetical protein
798	 74.53	+1	872337..873569	+	410	188580084	-	Mpop_0816	-	major facilitator superfamily MFS_1
799	 70.93	0	873767..874915	+	382	188580085	-	Mpop_0817	-	protein of unknown function DUF140
800	 68.34	0	874951..875787	+	278	188580086	-	Mpop_0818	-	ABC transporter related
801	 70.54	0	875859..876941	+	360	188580087	-	Mpop_0819	-	Mammalian cell entry related domain protein
802	 73.08	0	877065..877688	+	207	188580088	-	Mpop_0820	-	protein of unknown function DUF330
803	 73.87	+1	877716..878534	-	272	188580089	-	Mpop_0821	-	inositol monophosphatase
804	 72.62	0	878911..879414	+	167	188580090	-	Mpop_0822	-	hypothetical protein
805	 71.96	0	879440..879628	-	62	188580091	-	Mpop_0823	-	hypothetical protein
806	 74.03	+1	879679..880629	-	316	188580092	-	Mpop_0824	-	4-hydroxybenzoate polyprenyl transferase
807	 70.46	0	880666..881271	-	201	188580093	-	Mpop_0825	-	conserved hypothetical protein; putative signal peptide
808	 74.90	+1	881575..882327	+	250	188580094	-	Mpop_0826	-	protein of unknown function DUF558
809	 73.48	0	882357..883340	+	327	188580095	-	Mpop_0827	-	Asparaginase/glutaminase
810	 70.61	0	883528..884898	+	456	188580096	-	Mpop_0828	-	glutamate--cysteine ligase
811	 73.00	0	884942..886441	-	499	188580097	-	Mpop_0829	-	hypothetical protein
812	 72.54	0	886651..887076	+	141	188580098	-	Mpop_0830	-	hypothetical protein
813	 75.18	+1	887156..887437	+	93	188580099	-	Mpop_0831	-	SirA family protein
814	 71.43	0	887467..888033	+	188	188580100	-	Mpop_0832	-	NUDIX hydrolase
815	 70.37	0	888131..888265	+	44	188580101	-	Mpop_0833	-	hypothetical protein
816	 69.65	0	888447..888848	+	133	188580102	-	Mpop_0834	-	hypothetical protein
817	 74.83	+1	888954..889394	-	146	188580103	-	Mpop_0835	-	hypothetical protein
818	 71.24	0	889543..890307	-	254	188580104	-	Mpop_0836	-	porin
819	 71.88	0	890352..890543	-	63	188580105	-	Mpop_0837	-	hypothetical protein
820	 77.66	+1	890540..890812	-	90	188580106	-	Mpop_0838	-	hypothetical protein
821	 72.95	0	890971..891846	+	291	188580107	-	Mpop_0839	-	hypothetical protein
822	 77.65	+1	891843..893180	+	445	188580108	-	Mpop_0840	-	conserved hypothetical protein; putative signal peptide
823	 71.14	0	893187..893879	-	230	188580109	-	Mpop_0841	-	conserved hypothetical transmembrane signal peptide protein
824	 71.83	0	893876..894088	-	70	188580110	-	Mpop_0842	-	protein of unknown function DUF1289
825	 70.83	0	894150..894821	-	223	188580111	-	Mpop_0843	-	hypothetical protein
826	 67.69	0	894829..895317	-	162	188580112	-	Mpop_0844	-	hypothetical protein
827	 66.94	0	895314..895673	-	119	188580113	-	Mpop_0845	-	hypothetical protein
828	 75.97	+1	895754..896581	-	275	188580114	-	Mpop_0846	-	cobalamin 5'-phosphate synthase
829	 74.66	+1	896747..897784	+	345	188580115	-	Mpop_0847	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
830	 70.56	0	897791..899332	-	513	188580116	-	Mpop_0848	-	integral membrane sensor signal transduction histidine kinase
831	 68.64	0	899663..900118	+	151	188580117	-	Mpop_0849	-	(2Fe-2S)-binding domain protein
832	 71.99	0	900154..902349	+	731	188580118	-	Mpop_0850	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
833	 71.23	0	902515..905889	+	1124	188580119	-	Mpop_0851	-	signal transduction histidine kinase
834	 75.17	+1	905935..907239	-	434	188580120	-	Mpop_0852	-	Amidase
835	 71.06	0	907282..908259	+	325	188580121	-	Mpop_0853	-	Extensin family protein
836	 68.80	0	908495..908962	+	155	188580122	-	Mpop_0854	-	hypothetical protein
837	 70.09	0	909058..909729	+	223	188580123	-	Mpop_0855	-	ribonuclease T2
838	 72.00	0	910207..911013	+	268	188580124	-	Mpop_0856	-	protein of unknown function DUF519
839	 71.11	0	911041..911310	-	89	188580125	-	Mpop_0857	-	hypothetical protein
840	 70.56	0	911325..911555	-	76	188580126	-	Mpop_0858	-	hypothetical protein
841	 68.97	0	911665..913098	-	477	188580127	-	Mpop_0859	-	FAD linked oxidase domain protein
842	 65.01	-1	913462..913824	+	120	188580128	-	Mpop_0860	-	cytochrome c class I
843	 66.87	0	913922..914407	-	161	188580129	-	Mpop_0861	-	transcriptional regulator, MarR family
844	 73.23	0	914842..915450	-	202	188580130	-	Mpop_0862	-	hypothetical protein
845	 74.42	+1	915447..916130	-	227	188580131	-	Mpop_0863	-	protein of unknown function DUF1214
846	 68.20	0	916141..918423	-	760	188580132	-	Mpop_0864	-	penicillin-binding protein, 1A family
847	 71.40	0	918735..919199	+	154	188580133	-	Mpop_0865	-	protein of unknown function UPF0153
848	 75.34	+1	919232..919888	-	218	188580134	-	Mpop_0866	-	GCN5-related N-acetyltransferase
849	 59.06	-2	920168..920719	+	183	188580135	-	Mpop_0867	-	TadE family protein
850	 64.75	-1	920719..921552	+	277	188580136	-	Mpop_0868	-	TadE family protein
851	 60.74	-2	921537..922970	+	477	188580137	-	Mpop_0869	-	hypothetical protein
852	 71.19	0	923175..924389	+	404	188580138	-	Mpop_0870	-	AFG1-family ATPase
853	 75.82	+1	924489..925067	-	192	188580139	-	Mpop_0871	-	DNA-3-methyladenine glycosylase
854	 72.27	0	925088..925765	-	225	188580140	-	Mpop_0872	-	ribonuclease H
855	 71.57	0	925813..926607	-	264	188580141	-	Mpop_0873	-	hypothetical protein
856	 73.50	0	926607..926840	-	77	188580142	-	Mpop_0874	-	hypothetical protein
857	 69.90	0	927300..927608	+	102	188580143	-	Mpop_0875	-	hypothetical protein
858	 68.85	0	927831..928793	+	320	188580144	-	Mpop_0876	-	glutathione synthetase
859	 72.62	0	928905..929072	-	55	188580145	-	Mpop_0877	-	hypothetical protein
860	 72.81	0	929731..931308	-	525	188580146	-	Mpop_0878	-	sodium/hydrogen exchanger
861	 72.78	0	931401..932153	-	250	188580147	-	Mpop_0879	-	N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
862	 74.24	+1	932150..932875	-	241	188580148	-	Mpop_0880	-	heat shock protein DnaJ domain protein
863	 76.19	+1	933090..933383	-	97	188580149	-	Mpop_0881	-	hypothetical protein
864	 71.79	0	933591..934214	+	207	188580150	-	Mpop_0882	-	UreE urease accessory domain protein
865	 67.97	0	934335..934487	+	50	188580151	-	Mpop_0883	-	hypothetical protein
866	 73.13	0	934748..934948	+	66	188580152	-	Mpop_0884	-	hypothetical protein
867	 72.62	0	935222..936196	+	324	188580153	-	Mpop_0885	-	dihydrouridine synthase DuS
868	 72.35	0	936234..938291	-	685	188580154	-	Mpop_0886	-	diguanylate cyclase/phosphodiesterase
869	 65.56	-1	938402..938854	-	150	188580155	-	Mpop_0887	-	response regulator receiver protein
870	 64.53	-1	938915..939382	-	155	188580156	-	Mpop_0888	-	BLUF domain protein
871	 66.16	0	939628..941010	+	460	188580157	-	Mpop_0889	-	protein of unknown function DUF1078 domain protein
872	 72.20	0	941048..942946	+	632	188580158	-	Mpop_0890	-	flagellar hook-associated protein FlgK
873	 70.79	0	942961..944754	+	597	188580159	-	Mpop_0891	-	hypothetical protein
874	 72.46	0	944893..946170	-	425	188580160	-	Mpop_0892	-	hypothetical protein
875	 73.96	+1	946690..947580	-	296	188580161	-	Mpop_0893	-	protein-(glutamine-N5) methyltransferase, release factor-specific
876	 69.71	0	947618..948703	-	361	188580162	-	Mpop_0894	-	peptide chain release factor 1
877	 71.31	0	948780..951041	-	753	188580163	-	Mpop_0895	-	PTSINtr with GAF domain, PtsP
878	 67.72	0	951113..952348	-	411	188580164	-	Mpop_0896	-	aspartate kinase
879	 71.82	0	952526..953263	+	245	188580165	-	Mpop_0897	-	ubiquinone biosynthesis O-methyltransferase
880	 73.47	0	953322..953894	+	190	188580166	-	Mpop_0898	-	PEBP family protein
69.70	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.