IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.70   STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
720	 77.18	+1	795417..796139	-	240	188580006	-	Mpop_0738	-	hypothetical protein
721	 77.02	+1	796197..796505	-	102	188580007	-	Mpop_0739	-	hypothetical protein
722	 68.16	0	796702..798846	+	714	188580008	-	Mpop_0740	-	flagellar biosynthesis protein FlhA
723	 69.59	0	798987..800663	+	558	188580009	-	Mpop_0741	-	methyl-accepting chemotaxis sensory transducer
724	 65.52	-1	800820..800993	-	57	188580010	-	Mpop_0742	-	hypothetical protein
725	 67.24	0	801190..802242	-	350	188580011	-	Mpop_0743	-	hypothetical protein
726	 69.11	0	802452..802943	-	163	188580012	-	Mpop_0744	-	hypothetical protein
727	 71.11	0	803171..803575	-	134	188580013	-	Mpop_0745	-	flagellar export protein FliJ
728	 72.92	0	803668..805026	-	452	188580014	-	Mpop_0746	-	flagellar protein export ATPase FliI
729	 62.54	-1	805466..806167	+	233	188580015	-	Mpop_0747	-	two component transcriptional regulator, winged helix family
730	 67.89	0	806256..806501	-	81	188580016	-	Mpop_0748	-	hypothetical protein
731	 69.86	0	806535..807161	-	208	188580017	-	Mpop_0749	-	chloramphenicol acetyltransferase
732	 68.04	0	807237..809567	+	776	188580018	-	Mpop_0750	-	Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase
733	 67.57	0	809672..811111	+	479	188580019	-	Mpop_0751	-	Acetamidase/Formamidase
734	 72.22	0	811284..811463	-	59	188580020	-	Mpop_0752	-	hypothetical protein
735	 73.11	0	811533..812417	-	294	188580021	-	Mpop_0753	-	hypothetical protein
736	 71.68	0	812414..814489	-	691	188580022	-	Mpop_0754	-	glycosyl transferase family 2
737	 70.88	0	814486..816576	-	696	188580023	-	Mpop_0755	-	hypothetical protein
738	 76.77	+1	816588..817250	-	220	188580024	-	Mpop_0756	-	hypothetical protein
739	 68.90	0	817429..818814	-	461	188580025	-	Mpop_0757	-	peptidase M20
740	 66.86	0	819105..819629	+	174	188580026	-	Mpop_0758	-	(2Fe-2S)-binding domain protein
741	 70.80	0	819626..820642	+	338	188580027	-	Mpop_0759	-	molybdopterin dehydrogenase FAD-binding
742	 67.95	0	820653..822914	+	753	188580028	-	Mpop_0760	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
743	 67.21	0	823063..823431	+	122	188580029	-	Mpop_0761	-	CrcB protein
744	 70.55	0	823443..823880	+	145	188580030	-	Mpop_0762	-	protein of unknown function DUF6 transmembrane
745	 72.15	0	823868..824542	+	224	188580031	-	Mpop_0763	-	peptidase M15D vanX D-ala-D-ala dipeptidase
746	 75.00	+1	824712..824999	+	95	188580032	-	Mpop_0764	-	hypothetical protein
747	 74.92	+1	824996..825322	+	108	188580033	-	Mpop_0765	-	hypothetical protein
748	 66.07	0	825327..825662	-	111	188580034	-	Mpop_0766	-	transcriptional regulator, XRE family
749	 56.54	-2	825667..826071	-	134	188580035	-	Mpop_0767	-	protein of unknown function DUF891
750	 74.55	+1	826164..826823	-	219	188580036	-	Mpop_0768	-	transcriptional regulator, MarR family
751	 73.53	0	827069..829267	+	732	188580037	-	Mpop_0769	-	glycosyl transferase family 2
752	 67.97	0	829299..830066	+	255	188580038	-	Mpop_0770	-	glucose-1-phosphate cytidylyltransferase
753	 73.19	0	830066..831184	+	372	188580039	-	Mpop_0771	-	CDP-glucose 4,6-dehydratase
754	 69.35	0	831181..832410	+	409	188580040	-	Mpop_0772	-	C-methyltransferase
755	 70.22	0	832417..832950	+	177	188580041	-	Mpop_0773	-	dTDP-4-dehydrorhamnose 3,5-epimerase
756	 73.84	+1	832947..833894	+	315	188580042	-	Mpop_0774	-	NAD-dependent epimerase/dehydratase
757	 68.42	0	833869..834267	-	132	188580043	-	Mpop_0775	-	response regulator receiver protein
758	 71.60	0	834444..835700	-	418	188580044	-	Mpop_0776	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
759	 68.49	0	835889..838735	-	948	188580045	-	Mpop_0777	-	glycine dehydrogenase
760	 68.60	0	838810..839172	-	120	188580046	-	Mpop_0778	-	glycine cleavage system H protein
761	 75.15	+1	839200..840378	-	392	188580047	-	Mpop_0779	-	glycine cleavage system T protein
762	 71.86	0	840687..840917	-	76	188580048	-	Mpop_0780	-	hypothetical protein
763	 74.83	+1	841028..842191	+	387	188580049	-	Mpop_0781	-	8-amino-7-oxononanoate synthase
764	 74.22	+1	842197..843057	-	286	188580050	-	Mpop_0782	-	NLP/P60 protein
765	 75.00	+1	843367..843738	+	123	188580051	-	Mpop_0783	-	hypothetical protein
766	 71.47	0	843854..844540	-	228	188580052	-	Mpop_0784	-	short-chain dehydrogenase/reductase SDR
767	 65.32	-1	844617..844988	-	123	188580053	-	Mpop_0785	-	transcriptional modulator of MazE/toxin, MazF
768	 67.74	0	844988..845266	-	92	188580054	-	Mpop_0786	-	transcriptional regulator/antitoxin, MazE
769	 70.97	0	845323..846042	-	239	188580055	-	Mpop_0787	-	MgtC/SapB transporter
770	 72.69	0	846363..847358	+	331	188580056	-	Mpop_0788	-	ATPase associated with various cellular activities AAA_3
771	 75.67	+1	847364..848296	+	310	188580057	-	Mpop_0789	-	hypothetical protein
772	 76.09	+1	848336..848887	+	183	188580058	-	Mpop_0790	-	hypothetical protein
773	 74.71	+1	848893..849912	+	339	188580059	-	Mpop_0791	-	von Willebrand factor type A
774	 76.30	+1	849926..850849	+	307	188580060	-	Mpop_0792	-	von Willebrand factor type A
775	 74.12	+1	850849..851787	+	312	188580061	-	Mpop_0793	-	Tetratricopeptide TPR_2 repeat protein
776	 73.93	+1	851781..853061	+	426	188580062	-	Mpop_0794	-	hypothetical protein
777	 71.51	0	853149..854243	+	364	188580063	-	Mpop_0795	-	hypothetical protein
778	 72.06	0	854318..855337	+	339	188580064	-	Mpop_0796	-	protein of unknown function DUF6 transmembrane
779	 72.85	0	855313..855603	-	96	188580065	-	Mpop_0797	-	hypothetical protein
780	 74.04	+1	855876..856973	-	365	188580066	-	Mpop_0798	-	hypothetical protein
781	 71.70	0	857220..857636	-	138	188580067	-	Mpop_0799	-	methionine-R-sulfoxide reductase
782	 70.20	0	857742..858902	-	386	188580068	-	Mpop_0800	-	ribonuclease BN
783	 70.55	0	859051..860517	-	488	188580069	-	Mpop_0801	-	signal transduction histidine kinase
784	 69.08	0	860762..862294	-	510	188580070	-	Mpop_0802	-	AMP-dependent synthetase and ligase
785	 73.24	0	862457..862897	-	146	188580071	-	Mpop_0803	-	hypothetical protein
786	 74.39	+1	863233..864099	+	288	188580072	-	Mpop_0804	-	Collagen triple helix repeat
787	 75.02	+1	864107..865351	-	414	188580073	-	Mpop_0805	-	HI0933 family protein
788	 65.73	0	865631..866692	+	353	188580074	-	Mpop_0806	-	Integral membrane protein TerC
789	 73.33	0	866832..867131	+	99	188580075	-	Mpop_0807	-	hypothetical protein
790	 67.53	0	867238..867816	-	192	188580076	-	Mpop_0808	-	intracellular protease, PfpI family
791	 74.77	+1	867989..868210	+	73	188580077	-	Mpop_0809	-	hypothetical protein
792	 72.18	0	868387..868821	+	144	188580078	-	Mpop_0810	-	hypothetical protein
793	 70.77	0	868925..869314	-	129	188580079	-	Mpop_0811	-	hypothetical protein
794	 61.90	-1	869648..869857	+	69	188580080	-	Mpop_0812	-	cold-shock DNA-binding domain protein
795	 69.74	0	870052..870279	+	75	188580081	-	Mpop_0813	-	hypothetical protein
796	 70.52	0	870346..870786	-	146	188580082	-	Mpop_0814	-	hypothetical protein
797	 70.95	0	870891..872198	-	435	188580083	-	Mpop_0815	-	hypothetical protein
798	 74.53	+1	872337..873569	+	410	188580084	-	Mpop_0816	-	major facilitator superfamily MFS_1
799	 70.93	0	873767..874915	+	382	188580085	-	Mpop_0817	-	protein of unknown function DUF140
800	 68.34	0	874951..875787	+	278	188580086	-	Mpop_0818	-	ABC transporter related
801	 70.54	0	875859..876941	+	360	188580087	-	Mpop_0819	-	Mammalian cell entry related domain protein
802	 73.08	0	877065..877688	+	207	188580088	-	Mpop_0820	-	protein of unknown function DUF330
803	 73.87	+1	877716..878534	-	272	188580089	-	Mpop_0821	-	inositol monophosphatase
804	 72.62	0	878911..879414	+	167	188580090	-	Mpop_0822	-	hypothetical protein
805	 71.96	0	879440..879628	-	62	188580091	-	Mpop_0823	-	hypothetical protein
806	 74.03	+1	879679..880629	-	316	188580092	-	Mpop_0824	-	4-hydroxybenzoate polyprenyl transferase
807	 70.46	0	880666..881271	-	201	188580093	-	Mpop_0825	-	conserved hypothetical protein; putative signal peptide
808	 74.90	+1	881575..882327	+	250	188580094	-	Mpop_0826	-	protein of unknown function DUF558
809	 73.48	0	882357..883340	+	327	188580095	-	Mpop_0827	-	Asparaginase/glutaminase
810	 70.61	0	883528..884898	+	456	188580096	-	Mpop_0828	-	glutamate--cysteine ligase
811	 73.00	0	884942..886441	-	499	188580097	-	Mpop_0829	-	hypothetical protein
812	 72.54	0	886651..887076	+	141	188580098	-	Mpop_0830	-	hypothetical protein
813	 75.18	+1	887156..887437	+	93	188580099	-	Mpop_0831	-	SirA family protein
814	 71.43	0	887467..888033	+	188	188580100	-	Mpop_0832	-	NUDIX hydrolase
815	 70.37	0	888131..888265	+	44	188580101	-	Mpop_0833	-	hypothetical protein
816	 69.65	0	888447..888848	+	133	188580102	-	Mpop_0834	-	hypothetical protein
817	 74.83	+1	888954..889394	-	146	188580103	-	Mpop_0835	-	hypothetical protein
818	 71.24	0	889543..890307	-	254	188580104	-	Mpop_0836	-	porin
819	 71.88	0	890352..890543	-	63	188580105	-	Mpop_0837	-	hypothetical protein
69.70	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.