IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.70   STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
681	 67.87	0	743336..743917	+	193	188579967	-	Mpop_0699	-	DedA family
682	 75.58	+1	743914..744429	+	171	188579968	-	Mpop_0700	-	disulphide bond formation protein DsbB
683	 69.74	0	744393..745010	-	205	188579969	-	Mpop_0701	-	Putative ParB-like nuclease
684	 65.95	0	745243..745662	-	139	188579970	-	Mpop_0702	-	protein of unknown function DUF55
685	 76.92	+1	745764..746777	-	337	188579971	-	Mpop_0703	-	Glycerol-3-phosphate dehydrogenase (NAD(P)(+))
686	 69.45	0	747410..748810	+	466	188579972	-	Mpop_0704	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
687	 74.33	+1	748821..749864	-	347	188579973	-	Mpop_0705	-	metalloendopeptidase, glycoprotease family
688	 77.64	+1	750028..750756	+	242	188579974	-	Mpop_0706	-	uroporphyrinogen III synthase HEM4
689	 74.90	+1	750911..753241	+	776	188579975	-	Mpop_0707	-	hypothetical protein
690	 75.13	+1	753361..754896	+	511	188579976	-	Mpop_0708	-	HemY domain protein
691	 54.32	-2	755256..756089	+	277	188579977	-	Mpop_0709	-	hypothetical protein
692	 70.13	0	757009..759345	+	778	188579978	-	Mpop_0710	-	helicase domain protein
693	 70.68	0	765470..766342	-	290	188579979	-	Mpop_0711	-	hypothetical protein
694	 71.43	0	766462..767469	-	335	188579980	-	Mpop_0712	-	C4-dicarboxylate transporter/malic acid transport protein
695	 71.85	0	767514..769772	-	752	188579981	-	Mpop_0713	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
696	 68.01	0	769783..770229	-	148	188579982	-	Mpop_0714	-	(2Fe-2S)-binding domain protein
697	 71.78	0	770411..771427	-	338	188579983	-	Mpop_0715	-	zinc-binding alcohol dehydrogenase family protein
698	 72.81	0	771458..772483	-	341	188579984	-	Mpop_0716	-	protein of unknown function DUF6 transmembrane
699	 70.53	0	772714..773592	+	292	188579985	-	Mpop_0717	-	transcriptional regulator, LysR family
700	 71.09	0	773711..774502	-	263	188579986	-	Mpop_0718	-	short-chain dehydrogenase/reductase SDR
701	 72.00	0	774638..775594	+	318	188579987	-	Mpop_0719	-	transcriptional regulator, AraC family
702	 68.58	0	775705..775965	+	86	188579988	-	Mpop_0720	-	hypothetical protein
703	 71.74	0	776213..778303	+	696	188579989	-	Mpop_0721	-	peptidase C14 caspase catalytic subunit p20
704	 74.68	+1	778300..779634	+	444	188579990	-	Mpop_0722	-	hypothetical protein
705	 74.90	+1	779817..781286	+	489	188579991	-	Mpop_0723	-	hypothetical protein
706	 76.01	+1	781283..781828	+	181	188579992	-	Mpop_0724	-	hypothetical protein
707	 76.84	+1	781875..783044	+	389	188579993	-	Mpop_0725	-	hypothetical protein
708	 72.86	0	783126..784142	+	338	188579994	-	Mpop_0726	-	hypothetical protein
709	 70.93	0	784215..784472	+	85	188579995	-	Mpop_0727	-	plasmid stability protein StbC
710	 70.42	0	784469..784894	+	141	188579996	-	Mpop_0728	-	PilT protein domain protein
711	 75.74	+1	785020..785868	+	282	188579997	-	Mpop_0729	-	OmpA/MotB domain protein
712	 72.79	0	785924..786886	+	320	188579998	-	Mpop_0730	-	hypothetical protein
713	 73.37	0	786955..787968	+	337	188579999	-	Mpop_0731	-	hypothetical protein
714	 68.94	0	788222..788485	+	87	188580000	-	Mpop_0732	-	hypothetical protein
715	 74.83	+1	788548..789123	+	191	188580001	-	Mpop_0733	-	hypothetical protein
716	 73.70	0	789126..790661	+	511	188580002	-	Mpop_0734	-	hypothetical protein
717	 72.65	0	790776..793097	+	773	188580003	-	Mpop_0735	-	RNA binding S1 domain protein
718	 64.81	-1	793267..793968	+	233	188580004	-	Mpop_0736	-	ABC transporter related
719	 65.22	-1	794150..795394	+	414	188580005	-	Mpop_0737	-	capsule polysaccharide export protein-like protein
720	 77.18	+1	795417..796139	-	240	188580006	-	Mpop_0738	-	hypothetical protein
721	 77.02	+1	796197..796505	-	102	188580007	-	Mpop_0739	-	hypothetical protein
722	 68.16	0	796702..798846	+	714	188580008	-	Mpop_0740	-	flagellar biosynthesis protein FlhA
723	 69.59	0	798987..800663	+	558	188580009	-	Mpop_0741	-	methyl-accepting chemotaxis sensory transducer
724	 65.52	-1	800820..800993	-	57	188580010	-	Mpop_0742	-	hypothetical protein
725	 67.24	0	801190..802242	-	350	188580011	-	Mpop_0743	-	hypothetical protein
726	 69.11	0	802452..802943	-	163	188580012	-	Mpop_0744	-	hypothetical protein
727	 71.11	0	803171..803575	-	134	188580013	-	Mpop_0745	-	flagellar export protein FliJ
728	 72.92	0	803668..805026	-	452	188580014	-	Mpop_0746	-	flagellar protein export ATPase FliI
729	 62.54	-1	805466..806167	+	233	188580015	-	Mpop_0747	-	two component transcriptional regulator, winged helix family
730	 67.89	0	806256..806501	-	81	188580016	-	Mpop_0748	-	hypothetical protein
731	 69.86	0	806535..807161	-	208	188580017	-	Mpop_0749	-	chloramphenicol acetyltransferase
732	 68.04	0	807237..809567	+	776	188580018	-	Mpop_0750	-	Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase
733	 67.57	0	809672..811111	+	479	188580019	-	Mpop_0751	-	Acetamidase/Formamidase
734	 72.22	0	811284..811463	-	59	188580020	-	Mpop_0752	-	hypothetical protein
735	 73.11	0	811533..812417	-	294	188580021	-	Mpop_0753	-	hypothetical protein
736	 71.68	0	812414..814489	-	691	188580022	-	Mpop_0754	-	glycosyl transferase family 2
737	 70.88	0	814486..816576	-	696	188580023	-	Mpop_0755	-	hypothetical protein
738	 76.77	+1	816588..817250	-	220	188580024	-	Mpop_0756	-	hypothetical protein
739	 68.90	0	817429..818814	-	461	188580025	-	Mpop_0757	-	peptidase M20
740	 66.86	0	819105..819629	+	174	188580026	-	Mpop_0758	-	(2Fe-2S)-binding domain protein
741	 70.80	0	819626..820642	+	338	188580027	-	Mpop_0759	-	molybdopterin dehydrogenase FAD-binding
742	 67.95	0	820653..822914	+	753	188580028	-	Mpop_0760	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
743	 67.21	0	823063..823431	+	122	188580029	-	Mpop_0761	-	CrcB protein
744	 70.55	0	823443..823880	+	145	188580030	-	Mpop_0762	-	protein of unknown function DUF6 transmembrane
745	 72.15	0	823868..824542	+	224	188580031	-	Mpop_0763	-	peptidase M15D vanX D-ala-D-ala dipeptidase
746	 75.00	+1	824712..824999	+	95	188580032	-	Mpop_0764	-	hypothetical protein
747	 74.92	+1	824996..825322	+	108	188580033	-	Mpop_0765	-	hypothetical protein
748	 66.07	0	825327..825662	-	111	188580034	-	Mpop_0766	-	transcriptional regulator, XRE family
749	 56.54	-2	825667..826071	-	134	188580035	-	Mpop_0767	-	protein of unknown function DUF891
750	 74.55	+1	826164..826823	-	219	188580036	-	Mpop_0768	-	transcriptional regulator, MarR family
751	 73.53	0	827069..829267	+	732	188580037	-	Mpop_0769	-	glycosyl transferase family 2
752	 67.97	0	829299..830066	+	255	188580038	-	Mpop_0770	-	glucose-1-phosphate cytidylyltransferase
753	 73.19	0	830066..831184	+	372	188580039	-	Mpop_0771	-	CDP-glucose 4,6-dehydratase
754	 69.35	0	831181..832410	+	409	188580040	-	Mpop_0772	-	C-methyltransferase
755	 70.22	0	832417..832950	+	177	188580041	-	Mpop_0773	-	dTDP-4-dehydrorhamnose 3,5-epimerase
756	 73.84	+1	832947..833894	+	315	188580042	-	Mpop_0774	-	NAD-dependent epimerase/dehydratase
757	 68.42	0	833869..834267	-	132	188580043	-	Mpop_0775	-	response regulator receiver protein
758	 71.60	0	834444..835700	-	418	188580044	-	Mpop_0776	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
759	 68.49	0	835889..838735	-	948	188580045	-	Mpop_0777	-	glycine dehydrogenase
760	 68.60	0	838810..839172	-	120	188580046	-	Mpop_0778	-	glycine cleavage system H protein
761	 75.15	+1	839200..840378	-	392	188580047	-	Mpop_0779	-	glycine cleavage system T protein
762	 71.86	0	840687..840917	-	76	188580048	-	Mpop_0780	-	hypothetical protein
763	 74.83	+1	841028..842191	+	387	188580049	-	Mpop_0781	-	8-amino-7-oxononanoate synthase
764	 74.22	+1	842197..843057	-	286	188580050	-	Mpop_0782	-	NLP/P60 protein
765	 75.00	+1	843367..843738	+	123	188580051	-	Mpop_0783	-	hypothetical protein
766	 71.47	0	843854..844540	-	228	188580052	-	Mpop_0784	-	short-chain dehydrogenase/reductase SDR
767	 65.32	-1	844617..844988	-	123	188580053	-	Mpop_0785	-	transcriptional modulator of MazE/toxin, MazF
768	 67.74	0	844988..845266	-	92	188580054	-	Mpop_0786	-	transcriptional regulator/antitoxin, MazE
769	 70.97	0	845323..846042	-	239	188580055	-	Mpop_0787	-	MgtC/SapB transporter
770	 72.69	0	846363..847358	+	331	188580056	-	Mpop_0788	-	ATPase associated with various cellular activities AAA_3
771	 75.67	+1	847364..848296	+	310	188580057	-	Mpop_0789	-	hypothetical protein
772	 76.09	+1	848336..848887	+	183	188580058	-	Mpop_0790	-	hypothetical protein
773	 74.71	+1	848893..849912	+	339	188580059	-	Mpop_0791	-	von Willebrand factor type A
774	 76.30	+1	849926..850849	+	307	188580060	-	Mpop_0792	-	von Willebrand factor type A
775	 74.12	+1	850849..851787	+	312	188580061	-	Mpop_0793	-	Tetratricopeptide TPR_2 repeat protein
776	 73.93	+1	851781..853061	+	426	188580062	-	Mpop_0794	-	hypothetical protein
777	 71.51	0	853149..854243	+	364	188580063	-	Mpop_0795	-	hypothetical protein
778	 72.06	0	854318..855337	+	339	188580064	-	Mpop_0796	-	protein of unknown function DUF6 transmembrane
779	 72.85	0	855313..855603	-	96	188580065	-	Mpop_0797	-	hypothetical protein
780	 74.04	+1	855876..856973	-	365	188580066	-	Mpop_0798	-	hypothetical protein
69.70	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.