IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
621	 68.47	0	681529..683136	+	535	188579907	-	Mpop_0639	-	D-3-phosphoglycerate dehydrogenase
622	 70.30	0	683114..683443	+	109	188579908	-	Mpop_0640	-	hypothetical protein
623	 72.22	0	683521..684618	+	365	188579909	-	Mpop_0641	-	translation initiation factor, aIF-2BI family
624	 62.64	-1	684632..684979	-	115	188579910	-	Mpop_0642	-	putative DNA-binding protein
625	 73.78	+1	685025..686458	-	477	188579911	-	Mpop_0643	-	MATE efflux family protein
626	 69.35	0	686481..688421	-	646	188579912	-	Mpop_0644	-	ABC transporter related
627	 71.11	0	688466..688915	+	149	188579913	-	Mpop_0645	-	tRNA/rRNA methyltransferase (SpoU)
628	 68.62	0	689335..691332	+	665	188579914	-	Mpop_0646	-	TonB-dependent siderophore receptor
629	 69.70	0	691478..692401	+	307	188579915	-	Mpop_0647	-	Coproporphyrinogen oxidase
630	 69.62	0	692415..693533	+	372	188579916	-	Mpop_0648	-	conserved hypothetical protein; putative deoxyribonuclease
631	 70.97	0	693979..695256	-	425	188579917	-	Mpop_0649	-	putative transcriptional regulator, GntR family
632	 69.31	0	695649..696329	+	226	188579918	-	Mpop_0650	-	two component transcriptional regulator, winged helix family
633	 67.12	0	696451..698229	-	592	188579919	-	Mpop_0651	-	flagellin domain protein
634	 73.86	+1	698675..698980	-	101	188579920	-	Mpop_0652	-	type IV pilus assembly PilZ
635	 77.25	+1	699200..699766	+	188	188579921	-	Mpop_0653	-	hypothetical protein
636	 70.97	0	699912..701165	+	417	188579922	-	Mpop_0654	-	protein of unknown function DUF1217
637	 70.23	0	701170..701898	+	242	188579923	-	Mpop_0655	-	flagellar basal body rod protein
638	 73.59	0	701903..703231	+	442	188579924	-	Mpop_0656	-	ATPase, FliI/YscN family
639	 66.58	0	703314..704522	+	402	188579925	-	Mpop_0657	-	flagellar basal body FlaE domain protein
640	 73.88	+1	704625..706094	+	489	188579926	-	Mpop_0658	-	flagellar hook-associated protein FlgK
641	 70.09	0	706102..707154	+	350	188579927	-	Mpop_0659	-	flagellar hook-associated 3 family protein
642	 69.80	0	707196..707546	+	116	188579928	-	Mpop_0660	-	flagellar FlaF family protein
643	 75.76	+1	707557..708084	+	175	188579929	-	Mpop_0661	-	flagellar FlbT family protein
644	 65.47	-1	708090..708506	+	138	188579930	-	Mpop_0662	-	flagellar hook capping protein
645	 67.79	0	708636..708902	+	88	188579931	-	Mpop_0663	-	flagellar biosynthetic protein FliQ
646	 68.11	0	709195..711276	+	693	188579932	-	Mpop_0664	-	flagellar biosynthesis protein FlhA
647	 67.44	0	711273..712043	+	256	188579933	-	Mpop_0665	-	putative flagellar biosynthetic protein
648	 73.24	0	712049..712459	+	136	188579934	-	Mpop_0666	-	hypothetical protein
649	 71.13	0	712532..713002	+	156	188579935	-	Mpop_0667	-	hypothetical protein
650	 72.17	0	713009..713353	+	114	188579936	-	Mpop_0668	-	hypothetical protein
651	 64.43	-1	713357..713803	+	148	188579937	-	Mpop_0669	-	hypothetical protein
652	 74.60	+1	714026..715021	+	331	188579938	-	Mpop_0670	-	hypothetical protein
653	 70.47	0	715039..715380	-	113	188579939	-	Mpop_0671	-	protein of unknown function DUF1491
654	 76.29	+1	715641..716378	-	245	188579940	-	Mpop_0672	-	Peptidoglycan-binding domain 1 protein
655	 73.76	+1	716422..718353	-	643	188579941	-	Mpop_0673	-	multi-sensor signal transduction histidine kinase
656	 74.72	+1	718732..719091	+	119	188579942	-	Mpop_0674	-	hypothetical protein
657	 66.86	0	719155..720198	+	347	188579943	-	Mpop_0675	-	cytochrome d ubiquinol oxidase, subunit II
658	 64.65	-1	720195..720293	+	32	188579944	-	Mpop_0676	-	hypothetical protein
659	 74.26	+1	720490..722937	+	815	188579945	-	Mpop_0677	-	penicillin-binding protein, 1A family
660	 71.25	0	722975..723847	-	290	188579946	-	Mpop_0678	-	transcriptional regulator, LysR family
661	 62.10	-1	723942..724160	+	72	188579947	-	Mpop_0679	-	hypothetical protein
662	 72.05	0	724204..724983	+	259	188579948	-	Mpop_0680	-	protein of unknown function DUF1275
663	 71.10	0	725025..726512	-	495	188579949	-	Mpop_0681	-	AMP nucleosidase
664	 72.02	0	726656..727159	+	167	188579950	-	Mpop_0682	-	protein of unknown function UPF0066
665	 72.46	0	727167..728477	-	436	188579951	-	Mpop_0683	-	protein involved in cellulose biosynthesis (CelD)-like protein
666	 64.71	-1	728682..729752	-	356	188579952	-	Mpop_0684	-	protein of unknown function DUF201
667	 69.23	0	730001..730429	-	142	188579953	-	Mpop_0685	-	Protein of unknown function DUF1810
668	 73.67	0	730496..731380	-	294	188579954	-	Mpop_0686	-	histone deacetylase superfamily
669	 72.21	0	731506..732678	+	390	188579955	-	Mpop_0687	-	Ceramide glucosyltransferase
670	 68.61	0	733134..734678	+	514	188579956	-	Mpop_0688	-	chromosome segregation ATPase-like protein
671	 70.55	0	734720..735208	+	162	188579957	-	Mpop_0689	-	hypothetical protein
672	 68.44	0	735226..735732	+	168	188579958	-	Mpop_0690	-	hypothetical protein
673	 68.85	0	735916..737286	+	456	188579959	-	Mpop_0691	-	ethanolamine transproter
674	 72.58	0	737317..738009	+	230	188579960	-	Mpop_0692	-	glutamine amidotransferase class-I
675	 70.21	0	738011..739027	-	338	188579961	-	Mpop_0693	-	aldo/keto reductase
676	 73.46	0	739186..740097	+	303	188579962	-	Mpop_0694	-	transcriptional regulator, AraC family
677	 69.06	0	740309..741601	-	430	188579963	-	Mpop_0695	-	arsenical pump membrane protein
678	 70.32	0	741637..742074	-	145	188579964	-	Mpop_0696	-	arsenate reductase
679	 69.42	0	742067..742429	-	120	188579965	-	Mpop_0697	-	transcriptional regulator, ArsR family
680	 67.86	0	742477..743229	+	250	188579966	-	Mpop_0698	-	arsenical resistance protein ArsH
681	 67.87	0	743336..743917	+	193	188579967	-	Mpop_0699	-	DedA family
682	 75.58	+1	743914..744429	+	171	188579968	-	Mpop_0700	-	disulphide bond formation protein DsbB
683	 69.74	0	744393..745010	-	205	188579969	-	Mpop_0701	-	Putative ParB-like nuclease
684	 65.95	0	745243..745662	-	139	188579970	-	Mpop_0702	-	protein of unknown function DUF55
685	 76.92	+1	745764..746777	-	337	188579971	-	Mpop_0703	-	Glycerol-3-phosphate dehydrogenase (NAD(P)(+))
686	 69.45	0	747410..748810	+	466	188579972	-	Mpop_0704	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
687	 74.33	+1	748821..749864	-	347	188579973	-	Mpop_0705	-	metalloendopeptidase, glycoprotease family
688	 77.64	+1	750028..750756	+	242	188579974	-	Mpop_0706	-	uroporphyrinogen III synthase HEM4
689	 74.90	+1	750911..753241	+	776	188579975	-	Mpop_0707	-	hypothetical protein
690	 75.13	+1	753361..754896	+	511	188579976	-	Mpop_0708	-	HemY domain protein
691	 54.32	-2	755256..756089	+	277	188579977	-	Mpop_0709	-	hypothetical protein
692	 70.13	0	757009..759345	+	778	188579978	-	Mpop_0710	-	helicase domain protein
693	 70.68	0	765470..766342	-	290	188579979	-	Mpop_0711	-	hypothetical protein
694	 71.43	0	766462..767469	-	335	188579980	-	Mpop_0712	-	C4-dicarboxylate transporter/malic acid transport protein
695	 71.85	0	767514..769772	-	752	188579981	-	Mpop_0713	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
696	 68.01	0	769783..770229	-	148	188579982	-	Mpop_0714	-	(2Fe-2S)-binding domain protein
697	 71.78	0	770411..771427	-	338	188579983	-	Mpop_0715	-	zinc-binding alcohol dehydrogenase family protein
698	 72.81	0	771458..772483	-	341	188579984	-	Mpop_0716	-	protein of unknown function DUF6 transmembrane
699	 70.53	0	772714..773592	+	292	188579985	-	Mpop_0717	-	transcriptional regulator, LysR family
700	 71.09	0	773711..774502	-	263	188579986	-	Mpop_0718	-	short-chain dehydrogenase/reductase SDR
701	 72.00	0	774638..775594	+	318	188579987	-	Mpop_0719	-	transcriptional regulator, AraC family
702	 68.58	0	775705..775965	+	86	188579988	-	Mpop_0720	-	hypothetical protein
703	 71.74	0	776213..778303	+	696	188579989	-	Mpop_0721	-	peptidase C14 caspase catalytic subunit p20
704	 74.68	+1	778300..779634	+	444	188579990	-	Mpop_0722	-	hypothetical protein
705	 74.90	+1	779817..781286	+	489	188579991	-	Mpop_0723	-	hypothetical protein
706	 76.01	+1	781283..781828	+	181	188579992	-	Mpop_0724	-	hypothetical protein
707	 76.84	+1	781875..783044	+	389	188579993	-	Mpop_0725	-	hypothetical protein
708	 72.86	0	783126..784142	+	338	188579994	-	Mpop_0726	-	hypothetical protein
709	 70.93	0	784215..784472	+	85	188579995	-	Mpop_0727	-	plasmid stability protein StbC
710	 70.42	0	784469..784894	+	141	188579996	-	Mpop_0728	-	PilT protein domain protein
711	 75.74	+1	785020..785868	+	282	188579997	-	Mpop_0729	-	OmpA/MotB domain protein
712	 72.79	0	785924..786886	+	320	188579998	-	Mpop_0730	-	hypothetical protein
713	 73.37	0	786955..787968	+	337	188579999	-	Mpop_0731	-	hypothetical protein
714	 68.94	0	788222..788485	+	87	188580000	-	Mpop_0732	-	hypothetical protein
715	 74.83	+1	788548..789123	+	191	188580001	-	Mpop_0733	-	hypothetical protein
716	 73.70	0	789126..790661	+	511	188580002	-	Mpop_0734	-	hypothetical protein
717	 72.65	0	790776..793097	+	773	188580003	-	Mpop_0735	-	RNA binding S1 domain protein
718	 64.81	-1	793267..793968	+	233	188580004	-	Mpop_0736	-	ABC transporter related
719	 65.22	-1	794150..795394	+	414	188580005	-	Mpop_0737	-	capsule polysaccharide export protein-like protein
720	 77.18	+1	795417..796139	-	240	188580006	-	Mpop_0738	-	hypothetical protein
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.