IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
543	 68.80	0	609240..609941	+	233	188579829	-	Mpop_0561	-	endonuclease III
544	 62.77	-1	610132..610926	+	264	188579830	-	Mpop_0562	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
545	 72.96	0	610933..612600	-	555	188579831	-	Mpop_0563	-	glycosyl transferase family 2
546	 72.63	0	612597..614609	-	670	188579832	-	Mpop_0564	-	glycosyl transferase family 2
547	 74.77	+1	614694..615335	-	213	188579833	-	Mpop_0565	-	hypothetical protein
548	 68.41	0	615394..615966	-	190	188579834	-	Mpop_0566	-	Invasion associated locus B family protein
549	 72.62	0	616213..616632	+	139	188579835	-	Mpop_0567	-	hypothetical protein
550	 72.59	0	616747..617472	-	241	188579836	-	Mpop_0568	-	protein of unknown function DUF45
551	 68.84	0	617552..618796	-	414	188579837	-	Mpop_0569	-	polyhydroxyalkanoate depolymerase, intracellular
552	 70.04	0	618955..620349	+	464	188579838	-	Mpop_0570	-	integral membrane sensor signal transduction histidine kinase
553	 68.99	0	620386..620988	+	200	188579839	-	Mpop_0571	-	two component transcriptional regulator, Fis family
554	 65.78	0	621175..621399	+	74	188579840	-	Mpop_0572	-	putative exported protein of unknown function
555	 61.67	-1	621592..621831	+	79	188579841	-	Mpop_0573	-	phosphoribosylformylglycinamidine synthase, purS
556	 70.34	0	621831..622511	+	226	188579842	-	Mpop_0574	-	phosphoribosylformylglycinamidine synthase I
557	 67.77	0	622578..623123	-	181	188579843	-	Mpop_0575	-	adenine phosphoribosyltransferase
558	 69.94	0	623201..623995	-	264	188579844	-	Mpop_0576	-	Inositol-phosphate phosphatase
559	 76.21	+1	624127..624744	-	205	188579845	-	Mpop_0577	-	Thiamine-phosphate diphosphorylase
560	 70.62	0	624754..625563	-	269	188579846	-	Mpop_0578	-	thiazole biosynthesis family protein
561	 68.54	0	625568..625780	-	70	188579847	-	Mpop_0579	-	thiamine biosynthesis protein ThiS
562	 74.04	+1	625777..626997	-	406	188579848	-	Mpop_0580	-	glycine oxidase ThiO
563	 67.08	0	627437..629125	+	562	188579849	-	Mpop_0581	-	methyl-accepting chemotaxis sensory transducer
564	 69.17	0	629145..630422	-	425	188579850	-	Mpop_0582	-	adenylate/guanylate cyclase
565	 63.69	-1	630730..631098	+	122	188579851	-	Mpop_0583	-	hypothetical protein
566	 73.58	0	631252..632307	+	351	188579852	-	Mpop_0584	-	transcriptional regulator, AraC family
567	 75.70	+1	632313..633662	+	449	188579853	-	Mpop_0585	-	major facilitator superfamily MFS_1
568	 66.77	0	633707..635710	-	667	188579854	-	Mpop_0586	-	RNA polymerase, sigma 70 subunit, RpoD
569	 70.71	0	635917..637845	-	642	188579855	-	Mpop_0587	-	DNA primase
570	 72.43	0	638019..638990	+	323	188579856	-	Mpop_0588	-	Gluconolactonase
571	 71.72	0	639002..640168	+	388	188579857	-	Mpop_0589	-	major royal jelly protein
572	 67.97	0	640232..640690	-	152	188579858	-	Mpop_0590	-	GatB/YqeY
573	 69.06	0	640881..642131	+	416	188579859	-	Mpop_0591	-	carbamoyl-phosphate synthase, small subunit
574	 66.67	0	642272..642646	+	124	188579860	-	Mpop_0592	-	hypothetical protein
575	 62.63	-1	642653..642949	-	98	188579861	-	Mpop_0593	-	plasmid stabilization system
576	 65.94	0	642942..643217	-	91	188579862	-	Mpop_0594	-	putative addiction module antidote protein, CopG/Arc/MetJ family
577	 74.28	+1	643344..646010	-	888	188579863	-	Mpop_0595	-	hypothetical protein
578	 68.46	0	646169..646558	+	129	188579864	-	Mpop_0596	-	flagellar basal body rod protein
579	 69.06	0	646555..646971	+	138	188579865	-	Mpop_0597	-	flagellar basal-body rod protein FlgC
580	 69.77	0	646983..647336	+	117	188579866	-	Mpop_0598	-	flagellar hook-basal body complex protein FliE
581	 67.68	0	647363..648151	+	262	188579867	-	Mpop_0599	-	flagellar basal-body rod protein FlgG
582	 72.39	0	648190..648678	+	162	188579868	-	Mpop_0600	-	FlgA, flagellar basal-body P-ring formation protein
583	 70.28	0	648675..649808	+	377	188579869	-	Mpop_0601	-	flagellar P-ring protein
584	 71.97	0	649805..650389	+	194	188579870	-	Mpop_0602	-	conserved hypothetical proteinn
585	 69.90	0	650389..651099	+	236	188579871	-	Mpop_0603	-	flagellar L-ring protein
586	 68.74	0	651112..651594	+	160	188579872	-	Mpop_0604	-	flagellar basal body-associated protein FliL
587	 65.62	-1	651603..652364	+	253	188579873	-	Mpop_0605	-	flagellar biosynthetic protein FliP
588	 64.44	-1	652353..652667	-	104	188579874	-	Mpop_0606	-	plasmid stabilization system
589	 64.07	-1	652664..652894	-	76	188579875	-	Mpop_0607	-	hypothetical protein
590	 70.17	0	653158..654870	+	570	188579876	-	Mpop_0608	-	flagellar M-ring protein FliF
591	 77.51	+1	654870..655607	+	245	188579877	-	Mpop_0609	-	hypothetical protein
592	 71.41	0	655609..657021	+	470	188579878	-	Mpop_0610	-	OmpA/MotB domain protein
593	 73.88	+1	657018..658307	+	429	188579879	-	Mpop_0611	-	putative chemotaxis protein precursor
594	 77.44	+1	658347..660203	+	618	188579880	-	Mpop_0612	-	flagellar hook-length control protein
595	 67.34	0	660157..660750	+	197	188579881	-	Mpop_0613	-	Lytic transglycosylase catalytic
596	 66.95	0	660797..661495	-	232	188579882	-	Mpop_0614	-	two component transcriptional regulator, winged helix family
597	 66.67	0	661706..662152	-	148	188579883	-	Mpop_0615	-	hypothetical protein
598	 67.42	0	662149..663213	-	354	188579884	-	Mpop_0616	-	flagellar biosynthetic protein FlhB
599	 68.62	0	663251..664327	-	358	188579885	-	Mpop_0617	-	flagellar motor switch protein FliG
600	 70.03	0	664350..664676	-	108	188579886	-	Mpop_0618	-	flagellar motor switch protein FliN
601	 68.67	0	664873..665172	+	99	188579887	-	Mpop_0619	-	hypothetical protein
602	 73.74	+1	665186..665482	-	98	188579888	-	Mpop_0620	-	hypothetical protein
603	 70.54	0	665466..666473	-	335	188579889	-	Mpop_0621	-	flagellar motor switch protein FliM
604	 65.98	0	666486..667361	-	291	188579890	-	Mpop_0622	-	chemotaxis MotA protein
605	 68.92	0	667606..668226	+	206	188579891	-	Mpop_0623	-	20S proteasome A and B subunits
606	 68.49	0	668333..669646	+	437	188579892	-	Mpop_0624	-	heat shock protein HslVU, ATPase subunit HslU
607	 73.06	0	669649..670539	+	296	188579893	-	Mpop_0625	-	protein of unknown function DUF6 transmembrane
608	 71.19	0	670546..671607	-	353	188579894	-	Mpop_0626	-	beta-lactamase domain protein
609	 70.26	0	671657..672742	-	361	188579895	-	Mpop_0627	-	Rieske (2Fe-2S) domain protein
610	 71.48	0	673129..673647	-	172	188579896	-	Mpop_0628	-	hypothetical protein
611	 70.27	0	673934..674155	+	73	188579897	-	Mpop_0629	-	hypothetical protein
612	 69.80	0	674172..675734	+	520	188579898	-	Mpop_0630	-	signal recognition particle protein
613	 62.93	-1	675731..676078	+	115	188579899	-	Mpop_0631	-	chorismate mutase
614	 71.90	0	676078..676440	+	120	188579900	-	Mpop_0632	-	ribosomal protein S16
615	 73.19	0	676503..677177	+	224	188579901	-	Mpop_0633	-	16S rRNA processing protein RimM
616	 71.95	0	677221..678015	-	264	188579902	-	Mpop_0634	-	hypothetical protein
617	 72.93	0	678084..678818	-	244	188579903	-	Mpop_0635	-	Methyltransferase type 11
618	 75.64	+1	678926..679237	+	103	188579904	-	Mpop_0636	-	hypothetical protein
619	 73.19	0	679298..680017	+	239	188579905	-	Mpop_0637	-	tRNA (guanine-N1)-methyltransferase
620	 69.47	0	680192..681367	+	391	188579906	-	Mpop_0638	-	phosphoserine aminotransferase
621	 68.47	0	681529..683136	+	535	188579907	-	Mpop_0639	-	D-3-phosphoglycerate dehydrogenase
622	 70.30	0	683114..683443	+	109	188579908	-	Mpop_0640	-	hypothetical protein
623	 72.22	0	683521..684618	+	365	188579909	-	Mpop_0641	-	translation initiation factor, aIF-2BI family
624	 62.64	-1	684632..684979	-	115	188579910	-	Mpop_0642	-	putative DNA-binding protein
625	 73.78	+1	685025..686458	-	477	188579911	-	Mpop_0643	-	MATE efflux family protein
626	 69.35	0	686481..688421	-	646	188579912	-	Mpop_0644	-	ABC transporter related
627	 71.11	0	688466..688915	+	149	188579913	-	Mpop_0645	-	tRNA/rRNA methyltransferase (SpoU)
628	 68.62	0	689335..691332	+	665	188579914	-	Mpop_0646	-	TonB-dependent siderophore receptor
629	 69.70	0	691478..692401	+	307	188579915	-	Mpop_0647	-	Coproporphyrinogen oxidase
630	 69.62	0	692415..693533	+	372	188579916	-	Mpop_0648	-	conserved hypothetical protein; putative deoxyribonuclease
631	 70.97	0	693979..695256	-	425	188579917	-	Mpop_0649	-	putative transcriptional regulator, GntR family
632	 69.31	0	695649..696329	+	226	188579918	-	Mpop_0650	-	two component transcriptional regulator, winged helix family
633	 67.12	0	696451..698229	-	592	188579919	-	Mpop_0651	-	flagellin domain protein
634	 73.86	+1	698675..698980	-	101	188579920	-	Mpop_0652	-	type IV pilus assembly PilZ
635	 77.25	+1	699200..699766	+	188	188579921	-	Mpop_0653	-	hypothetical protein
636	 70.97	0	699912..701165	+	417	188579922	-	Mpop_0654	-	protein of unknown function DUF1217
637	 70.23	0	701170..701898	+	242	188579923	-	Mpop_0655	-	flagellar basal body rod protein
638	 73.59	0	701903..703231	+	442	188579924	-	Mpop_0656	-	ATPase, FliI/YscN family
639	 66.58	0	703314..704522	+	402	188579925	-	Mpop_0657	-	flagellar basal body FlaE domain protein
640	 73.88	+1	704625..706094	+	489	188579926	-	Mpop_0658	-	flagellar hook-associated protein FlgK
641	 70.09	0	706102..707154	+	350	188579927	-	Mpop_0659	-	flagellar hook-associated 3 family protein
642	 69.80	0	707196..707546	+	116	188579928	-	Mpop_0660	-	flagellar FlaF family protein
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.