IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
459	 77.08	+1	509027..510169	+	380	188579745	-	Mpop_0477	-	binding-protein-dependent transport systems inner membrane component
460	 76.01	+1	510166..510882	+	238	188579746	-	Mpop_0478	-	binding-protein-dependent transport systems inner membrane component
461	 67.22	0	511103..512060	+	319	188579747	-	Mpop_0479	-	hypothetical protein
462	 66.67	0	512073..512720	-	215	188579748	-	Mpop_0480	-	isochorismatase hydrolase
463	 67.76	0	513048..514142	-	364	188579749	-	Mpop_0481	-	ErfK/YbiS/YcfS/YnhG family protein
464	 74.58	+1	514249..515196	-	315	188579750	-	Mpop_0482	-	Extensin family protein
465	 71.62	0	515407..517506	+	699	188579751	-	Mpop_0483	-	Peptidyl-dipeptidase Dcp
466	 67.98	0	517655..519328	-	557	188579752	-	Mpop_0484	-	Formate--tetrahydrofolate ligase
467	 71.17	0	519543..519764	-	73	188579753	-	Mpop_0485	-	Heavy metal transport/detoxification protein
468	 74.83	+1	520052..521533	+	493	188579754	-	Mpop_0486	-	diguanylate phosphodiesterase
469	 72.81	0	521583..521810	-	75	188579755	-	Mpop_0487	-	hypothetical protein
470	 68.96	0	521956..522435	-	159	188579756	-	Mpop_0488	-	putative chemotaxis phosphatase, CheZ
471	 64.58	-1	522681..523064	-	127	188579757	-	Mpop_0489	-	response regulator receiver protein
472	 71.50	0	523359..524372	+	337	188579758	-	Mpop_0490	-	riboflavin biosynthesis protein RibF
473	 69.05	0	524495..525499	-	334	188579759	-	Mpop_0491	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
474	 72.05	0	525834..526427	+	197	188579760	-	Mpop_0492	-	protein of unknown function DUF1058
475	 70.46	0	526500..527000	-	166	188579761	-	Mpop_0493	-	ferric uptake regulator, Fur family
476	 69.26	0	527277..527816	+	179	188579762	-	Mpop_0494	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA
477	 69.44	0	527977..529203	+	408	188579763	-	Mpop_0495	-	Beta-ketoacyl synthase
478	 65.83	0	529353..529472	+	39	188579764	-	Mpop_0496	-	hypothetical protein
479	 68.59	0	529665..530498	+	277	188579765	-	Mpop_0497	-	short-chain dehydrogenase/reductase SDR
480	 68.90	0	530563..531324	+	253	188579766	-	Mpop_0498	-	flagellar biosynthetic protein FliP
481	 67.41	0	531448..531852	+	134	188579767	-	Mpop_0499	-	DoxX family protein
482	 74.99	+1	531856..535194	-	1112	188579768	-	Mpop_0500	-	tetratricopeptide TPR_4 protein
483	 70.89	0	535327..535752	-	141	188579769	-	Mpop_0501	-	hypothetical protein
484	 69.79	0	535917..538061	-	714	188579770	-	Mpop_0502	-	Oligopeptidase B
485	 67.58	0	538463..538900	+	145	188579771	-	Mpop_0503	-	transcriptional regulator, MucR family
486	 64.10	-1	539071..539265	+	64	188579772	-	Mpop_0504	-	hypothetical protein
487	 74.76	+1	539383..540210	+	275	188579773	-	Mpop_0505	-	hypothetical protein
488	 61.59	-2	540323..540736	-	137	188579774	-	Mpop_0506	-	Fe-S metabolism associated SufE
489	 69.81	0	540884..541963	-	359	188579775	-	Mpop_0507	-	signal transduction histidine kinase
490	 71.24	0	542116..545763	-	1215	188579776	-	Mpop_0508	-	multi-sensor hybrid histidine kinase
491	 68.63	0	546464..546973	+	169	188579777	-	Mpop_0509	-	hypothetical protein
492	 66.67	0	547073..547237	+	54	188579778	-	Mpop_0510	-	hypothetical protein
493	 64.85	-1	547286..547726	-	146	188579779	-	Mpop_0511	-	Glyoxalase/bleomycin resistance protein/dioxygenase
494	 68.43	0	548086..548994	+	302	188579780	-	Mpop_0512	-	hypothetical protein
495	 70.72	0	549073..551709	+	878	188579781	-	Mpop_0513	-	aminopeptidase N
496	 70.48	0	551908..554268	+	786	188579782	-	Mpop_0514	-	PAS/PAC sensor signal transduction histidine kinase
497	 71.08	0	554366..555295	+	309	188579783	-	Mpop_0515	-	arginase
498	 67.75	0	555355..556833	-	492	188579784	-	Mpop_0516	-	glucose-6-phosphate 1-dehydrogenase
499	 64.83	-1	557174..557608	-	144	188579785	-	Mpop_0517	-	hypothetical protein
500	 67.28	0	558020..558181	+	53	188579786	-	Mpop_0518	-	hypothetical protein
501	 69.75	0	558249..558572	-	107	188579787	-	Mpop_0519	-	CutA1 divalent ion tolerance protein
502	 68.87	0	558678..559448	+	256	188579788	-	Mpop_0520	-	NAD(+) kinase
503	 75.00	+1	559491..559718	-	75	188579789	-	Mpop_0521	-	protein of unknown function DUF1674
504	 75.70	+1	559871..561187	+	438	188579790	-	Mpop_0522	-	Fmu (Sun) domain protein
505	 69.09	0	561249..561413	-	54	188579791	-	Mpop_0523	-	hypothetical protein
506	 66.67	0	561720..562793	+	357	188579792	-	Mpop_0524	-	hypothetical protein
507	 73.15	0	563137..564369	+	410	188579793	-	Mpop_0525	-	aminotransferase class I and II
508	 70.00	0	564404..564733	-	109	188579794	-	Mpop_0526	-	hypothetical protein
509	 73.74	+1	565082..566014	+	310	188579795	-	Mpop_0527	-	malonyl CoA-acyl carrier protein transacylase
510	 70.18	0	566041..566781	+	246	188579796	-	Mpop_0528	-	3-oxoacyl-(acyl-carrier-protein) reductase
511	 62.03	-1	567043..567279	+	78	188579797	-	Mpop_0529	-	acyl carrier protein
512	 69.36	0	567414..568676	+	420	188579798	-	Mpop_0530	-	3-oxoacyl-(acyl-carrier-protein) synthase 2
513	 70.90	0	568910..570304	+	464	188579799	-	Mpop_0531	-	aminodeoxychorismate lyase
514	 73.76	+1	570321..571067	-	248	188579800	-	Mpop_0532	-	HAD-superfamily hydrolase, subfamily IA, variant 3
515	 67.59	0	571051..573438	-	795	188579801	-	Mpop_0533	-	Kojibiose phosphorylase
516	 69.79	0	573945..575162	+	405	188579802	-	Mpop_0534	-	acetate kinase
517	 68.63	0	575159..576178	+	339	188579803	-	Mpop_0535	-	secretion protein HlyD family protein
518	 69.37	0	576186..578924	+	912	188579804	-	Mpop_0536	-	ABC transporter related
519	 67.92	0	578926..580122	+	398	188579805	-	Mpop_0537	-	ABC-2 type transporter
520	 67.49	0	580200..582635	+	811	188579806	-	Mpop_0538	-	Phosphoketolase
521	 70.43	0	582781..585036	+	751	188579807	-	Mpop_0539	-	GAF sensor signal transduction histidine kinase
522	 66.67	0	585038..585499	+	153	188579808	-	Mpop_0540	-	response regulator receiver protein
523	 70.14	0	585496..587223	+	575	188579809	-	Mpop_0541	-	response regulator receiver sensor hybrid histidine kinase
524	 73.67	0	587596..588708	+	370	188579810	-	Mpop_0542	-	ABC transporter related
525	 69.10	0	588814..589839	+	341	188579811	-	Mpop_0543	-	extracellular solute-binding protein family 1
526	 72.90	0	589908..591560	+	550	188579812	-	Mpop_0544	-	binding-protein-dependent transport systems inner membrane component
527	 58.82	-2	591568..591669	-	33	188579813	-	Mpop_0545	-	hypothetical protein
528	 66.67	0	591981..592235	-	84	188579814	-	Mpop_0546	-	hypothetical protein
529	 67.50	0	592606..593325	-	239	188579815	-	Mpop_0547	-	protein of unknown function DUF540
530	 72.64	0	593485..594438	+	317	188579816	-	Mpop_0548	-	Kelch repeat-containing protein
531	 75.68	+1	594523..595875	+	450	188579817	-	Mpop_0549	-	amine oxidase
532	 68.55	0	595982..596617	+	211	188579818	-	Mpop_0550	-	cyclic nucleotide-binding protein
533	 70.71	0	596621..597040	-	139	188579819	-	Mpop_0551	-	Cupin 2 conserved barrel domain protein
534	 69.12	0	597194..597397	+	67	188579820	-	Mpop_0552	-	hypothetical protein
535	 68.42	0	597453..597566	-	37	188579821	-	Mpop_0553	-	hypothetical protein
536	 71.72	0	597614..597910	-	98	188579822	-	Mpop_0554	-	hypothetical protein
537	 68.03	0	598188..598334	+	48	188579823	-	Mpop_0555	-	hypothetical protein
538	 66.57	0	598570..599619	+	349	188579824	-	Mpop_0556	-	sulfate ABC transporter, periplasmic sulfate-binding protein
539	 68.30	0	599624..600478	+	284	188579825	-	Mpop_0557	-	sulfate ABC transporter, inner membrane subunit CysT
540	 67.44	0	600471..601373	+	300	188579826	-	Mpop_0558	-	sulfate ABC transporter, inner membrane subunit CysW
541	 69.21	0	601438..602421	+	327	188579827	-	Mpop_0559	-	sulfate ABC transporter, ATPase subunit
542	 66.09	0	608587..609108	-	173	188579828	-	Mpop_0560	-	putative membrane protein of unknown function
543	 68.80	0	609240..609941	+	233	188579829	-	Mpop_0561	-	endonuclease III
544	 62.77	-1	610132..610926	+	264	188579830	-	Mpop_0562	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
545	 72.96	0	610933..612600	-	555	188579831	-	Mpop_0563	-	glycosyl transferase family 2
546	 72.63	0	612597..614609	-	670	188579832	-	Mpop_0564	-	glycosyl transferase family 2
547	 74.77	+1	614694..615335	-	213	188579833	-	Mpop_0565	-	hypothetical protein
548	 68.41	0	615394..615966	-	190	188579834	-	Mpop_0566	-	Invasion associated locus B family protein
549	 72.62	0	616213..616632	+	139	188579835	-	Mpop_0567	-	hypothetical protein
550	 72.59	0	616747..617472	-	241	188579836	-	Mpop_0568	-	protein of unknown function DUF45
551	 68.84	0	617552..618796	-	414	188579837	-	Mpop_0569	-	polyhydroxyalkanoate depolymerase, intracellular
552	 70.04	0	618955..620349	+	464	188579838	-	Mpop_0570	-	integral membrane sensor signal transduction histidine kinase
553	 68.99	0	620386..620988	+	200	188579839	-	Mpop_0571	-	two component transcriptional regulator, Fis family
554	 65.78	0	621175..621399	+	74	188579840	-	Mpop_0572	-	putative exported protein of unknown function
555	 61.67	-1	621592..621831	+	79	188579841	-	Mpop_0573	-	phosphoribosylformylglycinamidine synthase, purS
556	 70.34	0	621831..622511	+	226	188579842	-	Mpop_0574	-	phosphoribosylformylglycinamidine synthase I
557	 67.77	0	622578..623123	-	181	188579843	-	Mpop_0575	-	adenine phosphoribosyltransferase
558	 69.94	0	623201..623995	-	264	188579844	-	Mpop_0576	-	Inositol-phosphate phosphatase
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.