IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4192	 64.97	-1	4566849..4567673	+	274	188583478	-	Mpop_4282	-	succinate dehydrogenase and fumarate reductase iron-sulfur protein
4193	 77.13	+1	4567943..4568506	+	187	188583479	-	Mpop_4283	-	outer membrane lipoprotein omp19
4194	 73.41	0	4568516..4570309	-	597	188583480	-	Mpop_4284	-	conserved hypothetical proteinn
4195	 72.90	0	4570593..4571618	+	341	188583481	-	Mpop_4285	-	KpsF/GutQ family protein
4196	 45.25	-2	4572706..4573578	+	290	188583482	-	Mpop_4286	-	hypothetical protein
4197	 42.88	-2	4573538..4574092	+	184	188583483	-	Mpop_4287	-	hypothetical protein
4198	 67.12	0	4574182..4574625	-	147	188583484	-	Mpop_4288	-	protein of unknown function DUF606
4199	 74.38	+1	4575065..4575829	+	254	188583485	-	Mpop_4289	-	Enoyl-CoA hydratase/isomerase
4200	 75.23	+1	4575837..4576688	+	283	188583486	-	Mpop_4290	-	short-chain dehydrogenase/reductase SDR
4201	 67.13	0	4576685..4577554	+	289	188583487	-	Mpop_4291	-	short-chain dehydrogenase/reductase SDR
4202	 67.16	0	4577580..4578584	+	334	188583488	-	Mpop_4292	-	Mg2 transporter protein CorA family protein
4203	 66.11	0	4578780..4579322	+	180	188583489	-	Mpop_4293	-	protein of unknown function DUF892
4204	 53.73	-2	4579749..4580606	-	285	188583490	-	Mpop_4294	-	hypothetical protein
4205	 74.11	+1	4581506..4581787	-	93	188583491	-	Mpop_4295	-	hypothetical protein
4206	 75.67	+1	4581889..4582410	-	173	188583492	-	Mpop_4296	-	hypothetical protein
4207	 76.12	+1	4582737..4583879	+	380	188583493	-	Mpop_4297	-	tetratricopeptide TPR_4
4208	 73.82	+1	4583956..4584822	-	288	188583494	-	Mpop_4298	-	alpha/beta hydrolase fold
4209	 75.14	+1	4584973..4586010	+	345	188583495	-	Mpop_4299	-	periplasmic binding protein
4210	 75.52	+1	4586007..4587056	+	349	188583496	-	Mpop_4300	-	transport system permease protein
4211	 74.71	+1	4587053..4587823	+	256	188583497	-	Mpop_4301	-	ABC transporter related
4212	 71.24	0	4588089..4588832	-	247	188583498	-	Mpop_4302	-	oxidoreductase molybdopterin binding
4213	 72.75	0	4588829..4589518	-	229	188583499	-	Mpop_4303	-	hypothetical protein
4214	 75.76	+1	4589515..4590108	-	197	188583500	-	Mpop_4304	-	Methyltransferase type 12
4215	 77.16	+1	4590105..4591343	-	412	188583501	-	Mpop_4305	-	Acyl-CoA dehydrogenase type 2 domain
4216	 73.26	0	4591509..4591796	+	95	188583502	-	Mpop_4306	-	hypothetical protein
4217	 69.33	0	4591816..4592040	+	74	188583503	-	Mpop_4307	-	hypothetical protein
4218	 73.52	0	4592041..4592259	+	72	188583504	-	Mpop_4308	-	hypothetical protein
4219	 69.28	0	4592335..4593369	-	344	188583505	-	Mpop_4309	-	aldo/keto reductase
4220	 73.33	0	4593677..4593916	+	79	188583506	-	Mpop_4310	-	hypothetical protein
4221	 65.40	-1	4594116..4594511	+	131	188583507	-	Mpop_4311	-	protein of unknown function DUF1044
4222	 65.14	-1	4594480..4594806	+	108	188583508	-	Mpop_4312	-	transcriptional regulator, XRE family
4223	 72.50	0	4594931..4595530	-	199	188583509	-	Mpop_4313	-	isochorismatase hydrolase
4224	 71.83	0	4595689..4597005	-	438	188583510	-	Mpop_4314	-	efflux transporter, RND family, MFP subunit
4225	 67.78	0	4596998..4600240	-	1080	188583511	-	Mpop_4315	-	acriflavin resistance protein
4226	 71.15	0	4600623..4601960	-	445	188583512	-	Mpop_4316	-	hypothetical protein
4227	 68.18	0	4601957..4602682	-	241	188583513	-	Mpop_4317	-	NADP oxidoreductase coenzyme F420-dependent
4228	 70.96	0	4602672..4603625	-	317	188583514	-	Mpop_4318	-	aldo/keto reductase
4229	 57.80	-2	4603874..4604155	+	93	188583515	-	Mpop_4319	-	hypothetical protein
4230	 76.76	+1	4604353..4604907	-	184	188583516	-	Mpop_4320	-	methyltransferase
4231	 77.51	+1	4605102..4606835	-	577	188583517	-	Mpop_4321	-	RNA-binding S4 domain protein
4232	 67.23	0	4606931..4607107	-	58	188583518	-	Mpop_4322	-	protein of unknown function DUF1328
4233	 70.80	0	4607364..4609514	-	716	188583519	-	Mpop_4323	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
4234	 74.95	+1	4609853..4610782	+	309	188583520	-	Mpop_4324	-	alpha/beta hydrolase fold
4235	 74.50	+1	4610981..4611682	-	233	188583521	-	Mpop_4325	-	short-chain dehydrogenase/reductase SDR
4236	 74.55	+1	4611781..4612224	-	147	188583522	-	Mpop_4326	-	CMP/dCMP deaminase zinc-binding
4237	 73.23	0	4612224..4613519	-	431	188583523	-	Mpop_4327	-	phosphoribosylamine--glycine ligase
4238	 73.00	0	4613627..4614352	+	241	188583524	-	Mpop_4328	-	hypothetical protein
4239	 73.61	0	4614451..4614666	+	71	188583525	-	Mpop_4329	-	hypothetical protein
4240	 75.47	+1	4614754..4616400	+	548	188583526	-	Mpop_4330	-	exodeoxyribonuclease VII, large subunit
4241	 65.79	0	4616531..4616758	+	75	188583527	-	Mpop_4331	-	hypothetical protein
4242	 67.51	0	4616927..4617871	+	314	188583528	-	Mpop_4332	-	ribose-phosphate pyrophosphokinase
4243	 70.32	0	4618001..4618465	-	154	188583529	-	Mpop_4333	-	GreA/GreB family elongation factor
4244	 73.63	0	4618480..4619484	-	334	188583530	-	Mpop_4334	-	quinone oxidoreductase, YhdH/YhfP family
4245	 76.21	+1	4619560..4620156	-	198	188583531	-	Mpop_4335	-	hypothetical protein
4246	 62.54	-1	4620645..4620983	+	112	188583532	-	Mpop_4336	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
4247	 67.34	0	4621492..4622088	+	198	188583533	-	Mpop_4337	-	transcriptional regulator, CarD family
4248	 69.53	0	4622374..4623246	+	290	188583534	-	Mpop_4338	-	RNA polymerase, sigma 32 subunit, RpoH
4249	 67.39	0	4623414..4624382	-	322	188583535	-	Mpop_4339	-	transcriptional regulator, LysR family
4250	 67.65	0	4625361..4626983	+	540	188583536	-	Mpop_4340	-	lambda integrase-like/DNA breaking-rejoining enzyme, catalytic core
4251	 69.82	0	4627247..4627816	+	189	188583537	-	Mpop_4342	-	hypothetical protein
4252	 52.68	-2	4628915..4629622	-	235	188583538	-	Mpop_4344	-	isochorismatase hydrolase
4253	 48.97	-2	4629817..4630788	-	323	188583539	-	Mpop_4345	-	conserved hypothetical protein; putative signal peptide
4254	 68.48	0	4630835..4631770	-	311	188583540	-	Mpop_4346	-	inner-membrane translocator
4255	 69.47	0	4631792..4632934	-	380	188583541	-	Mpop_4347	-	inner-membrane translocator
4256	 70.73	0	4632945..4634444	-	499	188583542	-	Mpop_4348	-	ABC transporter related
4257	 65.12	-1	4634499..4635599	-	366	188583543	-	Mpop_4349	-	basic membrane lipoprotein
4258	 56.25	-2	4635678..4636061	-	127	188583544	-	Mpop_4350	-	Glyoxalase/bleomycin resistance protein/dioxygenase
4259	 61.93	-1	4636193..4637206	-	337	188583545	-	Mpop_4351	-	2OG-Fe(II) oxygenase
4260	 71.23	0	4639623..4641047	-	474	188583546	-	Mpop_4355	-	gid protein
4261	 74.80	+1	4641195..4643345	-	716	188583547	-	Mpop_4356	-	methyl-accepting chemotaxis sensory transducer
4262	 69.41	0	4643898..4645538	+	546	188583548	-	Mpop_4357	-	Hemolysin-type calcium-binding region
4263	 73.74	+1	4645601..4646575	-	324	188583549	-	Mpop_4358	-	PDZ/DHR/GLGF domain protein
4264	 68.58	0	4646887..4647828	-	313	188583550	-	Mpop_4359	-	hypothetical protein
4265	 68.10	0	4648381..4651449	-	1022	188583551	-	Mpop_4360	-	excinuclease ABC, A subunit
4266	 72.75	0	4651635..4652078	-	147	188583552	-	Mpop_4361	-	Protein of unknown function DUF1772
4267	 71.43	0	4652086..4652547	-	153	188583553	-	Mpop_4362	-	Cupin 2 conserved barrel domain protein
4268	 69.27	0	4653011..4654048	+	345	188583554	-	Mpop_4363	-	methyl-accepting chemotaxis sensory transducer
4269	 76.50	+1	4654225..4656309	+	694	188583555	-	Mpop_4364	-	methyl-accepting chemotaxis sensory transducer
4270	 70.22	0	4656430..4657638	-	402	188583556	-	Mpop_4365	-	efflux transporter, RND family, MFP subunit
4271	 68.61	0	4657766..4660912	+	1048	188583557	-	Mpop_4366	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
4272	 74.55	+1	4660920..4661312	-	130	188583558	-	Mpop_4367	-	response regulator receiver protein
4273	 73.69	0	4661386..4664190	-	934	188583559	-	Mpop_4368	-	signal transduction histidine kinase
4274	 68.64	0	4664512..4665273	-	253	188583560	-	Mpop_4369	-	putative transcriptional regulator, Crp/Fnr family
4275	 68.90	0	4665545..4666396	-	283	188583561	-	Mpop_4370	-	glycoside hydrolase family 25
4276	 71.30	0	4666594..4667046	+	150	188583562	-	Mpop_4371	-	protein of unknown function DUF1130
4277	 77.08	+1	4667100..4668338	-	412	188583563	-	Mpop_4372	-	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
4278	 74.02	+1	4668695..4668898	+	67	188583564	-	Mpop_4373	-	hypothetical protein
4279	 65.79	0	4668895..4669122	+	75	188583565	-	Mpop_4374	-	hypothetical protein
4280	 70.16	0	4669261..4670232	+	323	188583566	-	Mpop_4375	-	Alcohol dehydrogenase zinc-binding domain protein
4281	 70.97	0	4670316..4670942	+	208	188583567	-	Mpop_4376	-	Nicotinamidase
4282	 75.64	+1	4670953..4671810	-	285	188583568	-	Mpop_4377	-	aminotransferase class IV
4283	 70.95	0	4671797..4672426	-	209	188583569	-	Mpop_4378	-	glutamine amidotransferase of anthranilate synthase
4284	 70.19	0	4672423..4673841	-	472	188583570	-	Mpop_4379	-	para-aminobenzoate synthase, subunit I
4285	 63.54	-1	4674126..4674413	+	95	188583571	-	Mpop_4380	-	addiction module antitoxin, RelB/DinJ family
4286	 65.25	-1	4674376..4674657	+	93	188583572	-	Mpop_4381	-	addiction module toxin, RelE/StbE family
4287	 69.78	0	4674774..4676120	+	448	188583573	-	Mpop_4382	-	MiaB-like tRNA modifying enzyme YliG
4288	 72.04	0	4676221..4676406	+	61	188583574	-	Mpop_4383	-	hypothetical protein
4289	 71.39	0	4676418..4676840	+	140	188583575	-	Mpop_4384	-	membrane protein-like protein
4290	 70.24	0	4676953..4677120	+	55	188583576	-	Mpop_4385	-	hypothetical protein
4291	 72.83	0	4677256..4678083	-	275	188583577	-	Mpop_4386	-	MazG family protein
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.