IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4106	 65.38	-1	4476540..4476773	-	77	188583392	-	Mpop_4190	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
4107	 66.95	0	4476789..4478531	-	580	188583393	-	Mpop_4191	-	fumarate reductase/succinate dehydrogenase flavoprotein domain protein
4108	 72.67	0	4478543..4478842	-	99	188583394	-	Mpop_4192	-	protein of unknown function DUF971
4109	 68.88	0	4479108..4481144	+	678	188583395	-	Mpop_4193	-	Radical SAM domain protein
4110	 69.86	0	4481457..4482866	-	469	188583396	-	Mpop_4194	-	chromate transporter, chromate ion transporter (CHR) family
4111	 73.77	+1	4482869..4483699	-	276	188583397	-	Mpop_4195	-	Rhodanese domain protein
4112	 71.37	0	4484124..4486205	+	693	188583398	-	Mpop_4196	-	integral membrane sensor hybrid histidine kinase
4113	 73.42	0	4486303..4486524	-	73	188583399	-	Mpop_4197	-	hypothetical protein
4114	 69.26	0	4486667..4487593	-	308	188583400	-	Mpop_4198	-	periplasmic binding protein/LacI transcriptional regulator
4115	 69.07	0	4487620..4489326	-	568	188583401	-	Mpop_4199	-	methyl-accepting chemotaxis sensory transducer
4116	 67.63	0	4489437..4490885	-	482	188583402	-	Mpop_4200	-	Carbohydrate-selective porin OprB
4117	 69.06	0	4491376..4492710	-	444	188583403	-	Mpop_4201	-	Gluconate 2-dehydrogenase (acceptor)
4118	 65.65	-1	4492721..4494493	-	590	188583404	-	Mpop_4202	-	Gluconate 2-dehydrogenase (acceptor)
4119	 67.65	0	4494532..4495242	-	236	188583405	-	Mpop_4203	-	hypothetical protein
4120	 69.18	0	4495669..4496106	+	145	188583406	-	Mpop_4204	-	hypothetical protein
4121	 72.28	0	4496097..4497734	+	545	188583407	-	Mpop_4205	-	Glyoxalase/bleomycin resistance protein/dioxygenase
4122	 72.22	0	4497742..4498623	-	293	188583408	-	Mpop_4206	-	transcriptional regulator, IclR family
4123	 72.50	0	4498669..4499439	-	256	188583409	-	Mpop_4207	-	2-dehydro-3-deoxyglucarate aldolase
4124	 74.78	+1	4499635..4500768	+	377	188583410	-	Mpop_4208	-	peptidase M24
4125	 72.32	0	4500815..4502689	+	624	188583411	-	Mpop_4209	-	thiamine pyrophosphate protein central region
4126	 70.22	0	4502701..4503909	+	402	188583412	-	Mpop_4210	-	Mandelate racemase/muconate lactonizing protein
4127	 72.36	0	4503912..4504736	+	274	188583413	-	Mpop_4211	-	short-chain dehydrogenase/reductase SDR
4128	 66.67	0	4504799..4506232	+	477	188583414	-	Mpop_4212	-	sugar transporter
4129	 70.58	0	4506225..4507247	+	340	188583415	-	Mpop_4213	-	Xylose isomerase domain protein TIM barrel
4130	 72.35	0	4507307..4508221	-	304	188583416	-	Mpop_4214	-	transcriptional regulator, LysR family
4131	 70.40	0	4508362..4509861	+	499	188583417	-	Mpop_4215	-	methylmalonate-semialdehyde dehydrogenase
4132	 68.93	0	4510406..4511419	+	337	188583418	-	Mpop_4216	-	transcriptional regulator, LysR family
4133	 63.64	-1	4511443..4511739	-	98	188583419	-	Mpop_4217	-	hypothetical protein
4134	 70.59	0	4511939..4513339	+	466	188583420	-	Mpop_4218	-	amidohydrolase
4135	 63.12	-1	4514450..4514731	-	93	188583421	-	Mpop_4220	-	transposase IS3/IS911 family protein
4136	 70.33	0	4515061..4515825	-	254	188583422	-	Mpop_4222	-	ABC transporter related
4137	 70.89	0	4515822..4516862	-	346	188583423	-	Mpop_4223	-	transport system permease protein
4138	 69.84	0	4516859..4517836	-	325	188583424	-	Mpop_4224	-	periplasmic binding protein
4139	 67.29	0	4517944..4520013	-	689	188583425	-	Mpop_4225	-	TonB-dependent siderophore receptor
4140	 64.76	-1	4520160..4521368	+	402	188583426	-	Mpop_4226	-	transposase mutator type
4141	 62.84	-1	4521934..4522587	-	217	188583427	-	Mpop_4228	-	HupE/UreJ protein
4142	 60.72	-2	4522604..4522990	-	128	188583428	-	Mpop_4229	-	hypothetical protein
4143	 60.37	-2	4522987..4523748	-	253	188583429	-	Mpop_4230	-	Thiocyanate hydrolase
4144	 56.26	-2	4523782..4524636	-	284	188583430	-	Mpop_4231	-	hypothetical protein
4145	 68.94	0	4525027..4527270	-	747	188583431	-	Mpop_4232	-	TonB-dependent siderophore receptor
4146	 68.68	0	4527513..4528856	-	447	188583432	-	Mpop_4233	-	transposase IS4 family protein
4147	 56.58	-2	4530275..4531087	-	270	188583433	-	Mpop_4234	-	protein of unknown function DUF81
4148	 48.56	-2	4531730..4531972	+	80	188583434	-	Mpop_4236	-	hypothetical protein
4149	 50.00	-2	4531985..4532296	+	103	188583435	-	Mpop_4237	-	hypothetical protein
4150	 71.96	0	4533681..4534247	-	188	188583436	-	Mpop_4240	-	hypothetical protein
4151	 69.76	0	4534251..4534670	-	139	188583437	-	Mpop_4241	-	hypothetical protein
4152	 64.97	-1	4534744..4535982	+	412	188583438	-	Mpop_4242	-	hypothetical protein
4153	 65.74	0	4535963..4536178	+	71	188583439	-	Mpop_4243	-	hypothetical protein
4154	 58.06	-2	4536331..4537770	+	479	188583440	-	Mpop_4244	-	hypothetical protein
4155	 73.39	0	4537974..4538732	+	252	188583441	-	Mpop_4245	-	Peptidoglycan-binding domain 1 protein
4156	 69.27	0	4538736..4538927	+	63	188583442	-	Mpop_4246	-	hypothetical protein
4157	 68.68	0	4539239..4540582	+	447	188583443	-	Mpop_4247	-	transposase IS4 family protein
4158	 62.43	-1	4540749..4540937	+	62	188583444	-	Mpop_4248	-	hypothetical protein
4159	 64.81	-1	4540934..4541419	+	161	188583445	-	Mpop_4249	-	hypothetical protein
4160	 52.05	-2	4541647..4542843	-	398	188583446	-	Mpop_4250	-	Capsular polysaccharide biosynthesis protein-like protein
4161	 68.68	0	4543038..4544381	+	447	188583447	-	Mpop_4251	-	transposase IS4 family protein
4162	 50.53	-2	4544378..4545133	-	251	188583448	-	Mpop_4252	-	hypothetical protein
4163	 68.56	0	4545531..4546589	+	352	188583449	-	Mpop_4253	-	dTDP-glucose 4,6-dehydratase
4164	 73.74	+1	4546592..4547482	+	296	188583450	-	Mpop_4254	-	dTDP-4-dehydrorhamnose reductase
4165	 66.89	0	4547498..4548388	+	296	188583451	-	Mpop_4255	-	glucose-1-phosphate thymidylyltransferase
4166	 73.46	0	4548436..4548597	-	53	188583452	-	Mpop_4256	-	hypothetical protein
4167	 70.04	0	4548594..4548860	-	88	188583453	-	Mpop_4257	-	hypothetical protein
4168	 67.59	0	4548857..4549072	-	71	188583454	-	Mpop_4258	-	hypothetical protein
4169	 69.66	0	4549069..4549335	-	88	188583455	-	Mpop_4259	-	hypothetical protein
4170	 71.07	0	4549740..4550489	+	249	188583456	-	Mpop_4260	-	short-chain dehydrogenase/reductase SDR
4171	 67.59	0	4550595..4552214	+	539	188583457	-	Mpop_4261	-	peptide chain release factor 3
4172	 67.19	0	4552264..4552455	-	63	188583458	-	Mpop_4262	-	hypothetical protein
4173	 69.89	0	4552562..4552996	-	144	188583459	-	Mpop_4263	-	hypothetical protein
4174	 72.01	0	4553104..4553871	-	255	188583460	-	Mpop_4264	-	ABC transporter related
4175	 72.24	0	4553883..4554635	-	250	188583461	-	Mpop_4265	-	binding-protein-dependent transport systems inner membrane component
4176	 70.37	0	4554664..4555689	-	341	188583462	-	Mpop_4266	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
4177	 66.44	0	4555888..4556325	+	145	188583463	-	Mpop_4267	-	hypothetical protein
4178	 71.35	0	4556746..4556937	-	63	188583464	-	Mpop_4268	-	hypothetical protein
4179	 72.30	0	4557121..4557333	+	70	188583465	-	Mpop_4269	-	hypothetical protein
4180	 71.57	0	4557371..4557574	-	67	188583466	-	Mpop_4270	-	hypothetical protein
4181	 68.93	0	4557676..4557984	-	102	188583467	-	Mpop_4271	-	hypothetical protein
4182	 71.51	0	4558029..4558544	-	171	188583468	-	Mpop_4272	-	iron (metal) dependent repressor, DtxR family
4183	 70.04	0	4558973..4560307	+	444	188583469	-	Mpop_4273	-	Mn2+/Fe2+ transporter, NRAMP family
4184	 71.81	0	4560320..4561213	-	297	188583470	-	Mpop_4274	-	transcriptional regulator, LysR family
4185	 70.29	0	4561387..4562712	+	441	188583471	-	Mpop_4275	-	sodium/sulphate symporter
4186	 68.41	0	4562846..4563247	+	133	188583472	-	Mpop_4276	-	succinate dehydrogenase, cytochrome b556 subunit
4187	 68.33	0	4563259..4563678	+	139	188583473	-	Mpop_4277	-	succinate dehydrogenase, hydrophobic membrane anchor protein
4188	 68.26	0	4563711..4565528	+	605	188583474	-	Mpop_4278	-	succinate dehydrogenase, flavoprotein subunit
4189	 62.60	-1	4565579..4565824	+	81	188583475	-	Mpop_4279	-	protein of unknown function DUF433
4190	 63.79	-1	4565839..4566186	+	115	188583476	-	Mpop_4280	-	hypothetical protein
4191	 72.42	0	4566190..4566780	+	196	188583477	-	Mpop_4281	-	hypothetical protein
4192	 64.97	-1	4566849..4567673	+	274	188583478	-	Mpop_4282	-	succinate dehydrogenase and fumarate reductase iron-sulfur protein
4193	 77.13	+1	4567943..4568506	+	187	188583479	-	Mpop_4283	-	outer membrane lipoprotein omp19
4194	 73.41	0	4568516..4570309	-	597	188583480	-	Mpop_4284	-	conserved hypothetical proteinn
4195	 72.90	0	4570593..4571618	+	341	188583481	-	Mpop_4285	-	KpsF/GutQ family protein
4196	 45.25	-2	4572706..4573578	+	290	188583482	-	Mpop_4286	-	hypothetical protein
4197	 42.88	-2	4573538..4574092	+	184	188583483	-	Mpop_4287	-	hypothetical protein
4198	 67.12	0	4574182..4574625	-	147	188583484	-	Mpop_4288	-	protein of unknown function DUF606
4199	 74.38	+1	4575065..4575829	+	254	188583485	-	Mpop_4289	-	Enoyl-CoA hydratase/isomerase
4200	 75.23	+1	4575837..4576688	+	283	188583486	-	Mpop_4290	-	short-chain dehydrogenase/reductase SDR
4201	 67.13	0	4576685..4577554	+	289	188583487	-	Mpop_4291	-	short-chain dehydrogenase/reductase SDR
4202	 67.16	0	4577580..4578584	+	334	188583488	-	Mpop_4292	-	Mg2 transporter protein CorA family protein
4203	 66.11	0	4578780..4579322	+	180	188583489	-	Mpop_4293	-	protein of unknown function DUF892
4204	 53.73	-2	4579749..4580606	-	285	188583490	-	Mpop_4294	-	hypothetical protein
4205	 74.11	+1	4581506..4581787	-	93	188583491	-	Mpop_4295	-	hypothetical protein
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.