IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4009	 66.08	0	4362565..4362735	+	56	188583295	-	Mpop_4087	-	hypothetical protein
4010	 69.40	0	4362802..4363167	-	121	188583296	-	Mpop_4088	-	hypothetical protein
4011	 68.25	0	4363200..4366427	-	1075	188583297	-	Mpop_4089	-	acriflavin resistance protein
4012	 71.59	0	4366440..4368167	-	575	188583298	-	Mpop_4090	-	efflux transporter, RND family, MFP subunit
4013	 67.13	0	4369060..4370556	+	498	188583299	-	Mpop_4091	-	hypothetical protein
4014	 62.50	-1	4372771..4373082	+	103	188583300	-	Mpop_4094	-	hypothetical protein
4015	 67.59	0	4373085..4373192	+	35	188583301	-	Mpop_4095	-	hypothetical protein
4016	 66.22	0	4373385..4373606	+	73	188583302	-	Mpop_4096	-	hypothetical protein
4017	 67.65	0	4373781..4375415	+	544	188583303	-	Mpop_4097	-	filamentation induced by cAMP protein Fic
4018	 70.61	0	4375942..4376601	+	219	188583304	-	Mpop_4098	-	two component transcriptional regulator, winged helix family
4019	 72.84	0	4376598..4377893	+	431	188583305	-	Mpop_4099	-	integral membrane sensor signal transduction histidine kinase
4020	 70.66	0	4377986..4378762	+	258	188583306	-	Mpop_4100	-	protein of unknown function DUF347
4021	 71.32	0	4378831..4379238	+	135	188583307	-	Mpop_4101	-	hypothetical protein
4022	 69.88	0	4379268..4380107	+	279	188583308	-	Mpop_4102	-	protein of unknown function DUF347
4023	 68.98	0	4380080..4380856	+	258	188583309	-	Mpop_4103	-	protein of unknown function DUF347
4024	 68.60	0	4381155..4381928	+	257	188583310	-	Mpop_4104	-	phosphoesterase PA-phosphatase related
4025	 70.04	0	4381945..4384611	-	888	188583311	-	Mpop_4105	-	multi-sensor hybrid histidine kinase
4026	 68.14	0	4384741..4386102	-	453	188583312	-	Mpop_4106	-	signal transduction histidine kinase
4027	 66.67	0	4386771..4387004	+	77	188583313	-	Mpop_4107	-	hypothetical protein
4028	 69.07	0	4388112..4391399	+	1095	188583314	-	Mpop_4108	-	multi-sensor hybrid histidine kinase
4029	 73.75	+1	4391587..4391967	+	126	188583315	-	Mpop_4109	-	hypothetical protein
4030	 67.68	0	4392048..4392443	+	131	188583316	-	Mpop_4110	-	hypothetical protein
4031	 72.46	0	4392440..4393924	+	494	188583317	-	Mpop_4111	-	efflux transporter, RND family, MFP subunit
4032	 69.72	0	4393921..4397094	+	1057	188583318	-	Mpop_4112	-	heavy metal efflux pump, CzcA family
4033	 69.48	0	4397129..4397590	+	153	188583319	-	Mpop_4113	-	protein of unknown function DUF411
4034	 63.29	-1	4397604..4398344	-	246	188583320	-	Mpop_4114	-	hypothetical protein
4035	 71.69	0	4398587..4398805	+	72	188583321	-	Mpop_4115	-	hypothetical protein
4036	 70.90	0	4398824..4399225	-	133	188583322	-	Mpop_4116	-	transcriptional regulator, MerR family
4037	 74.04	+1	4399326..4401521	+	731	188583323	-	Mpop_4117	-	heavy metal translocating P-type ATPase
4038	 71.35	0	4401521..4402033	+	170	188583324	-	Mpop_4118	-	peptidase A8 signal peptidase II
4039	 71.72	0	4402122..4403189	+	355	188583325	-	Mpop_4119	-	protein of unknown function DUF949
4040	 71.09	0	4403226..4403948	+	240	188583326	-	Mpop_4120	-	cytochrome c biogenesis protein transmembrane region
4041	 65.12	-1	4404076..4404399	-	107	188583327	-	Mpop_4121	-	protein of unknown function UPF0060
4042	 68.64	0	4405421..4406785	-	454	188583328	-	Mpop_4123	-	efflux transporter, RND family, MFP subunit
4043	 66.37	0	4406917..4407258	-	113	188583329	-	Mpop_4124	-	hypothetical protein
4044	 73.79	+1	4408209..4409948	+	579	188583330	-	Mpop_4125	-	efflux transporter, RND family, MFP subunit
4045	 69.68	0	4409961..4413110	+	1049	188583331	-	Mpop_4126	-	heavy metal efflux pump, CzcA family
4046	 72.95	0	4413129..4413494	+	121	188583332	-	Mpop_4127	-	hypothetical protein
4047	 71.19	0	4413654..4413896	+	80	188583333	-	Mpop_4128	-	hypothetical protein
4048	 62.17	-1	4413988..4414365	+	125	188583334	-	Mpop_4129	-	protein of unknown function DUF305
4049	 71.83	0	4414514..4416913	+	799	188583335	-	Mpop_4130	-	copper-translocating P-type ATPase
4050	 67.50	0	4417141..4417620	+	159	188583336	-	Mpop_4131	-	hypothetical protein
4051	 69.91	0	4417996..4418334	-	112	188583337	-	Mpop_4132	-	hypothetical protein
4052	 71.18	0	4418334..4419728	-	464	188583338	-	Mpop_4133	-	UBA/THIF-type NAD/FAD binding protein
4053	 69.89	0	4419730..4420443	-	237	188583339	-	Mpop_4134	-	hypothetical protein
4054	 71.33	0	4420588..4424019	-	1143	188583340	-	Mpop_4135	-	UvrD/REP helicase
4055	 70.62	0	4424006..4424638	-	210	188583341	-	Mpop_4136	-	hypothetical protein
4056	 64.47	-1	4424635..4425408	-	257	188583342	-	Mpop_4137	-	RNA polymerase, sigma-24 subunit, ECF subfamily
4057	 70.23	0	4425812..4426288	-	158	188583343	-	Mpop_4138	-	hypothetical protein
4058	 69.44	0	4427502..4427825	+	107	188583344	-	Mpop_4139	-	transcriptional regulator, ArsR family
4059	 70.31	0	4427832..4429148	-	438	188583345	-	Mpop_4140	-	integral membrane sensor signal transduction histidine kinase
4060	 69.98	0	4429145..4429807	-	220	188583346	-	Mpop_4141	-	two component transcriptional regulator, winged helix family
4061	 72.39	0	4429910..4431655	+	581	188583347	-	Mpop_4142	-	cytochrome c biogenesis protein transmembrane region
4062	 70.13	0	4431695..4432330	+	211	188583348	-	Mpop_4143	-	DSBA oxidoreductase
4063	 70.55	0	4432330..4433178	+	282	188583349	-	Mpop_4144	-	ErfK/YbiS/YcfS/YnhG family protein
4064	 67.75	0	4433165..4433626	+	153	188583350	-	Mpop_4145	-	protein of unknown function DUF1791
4065	 72.07	0	4433880..4434305	+	141	188583351	-	Mpop_4146	-	protein of unknown function DUF395 YeeE/YedE
4066	 72.71	0	4434309..4434755	+	148	188583352	-	Mpop_4147	-	protein of unknown function DUF395 YeeE/YedE
4067	 73.70	0	4434752..4435561	+	269	188583353	-	Mpop_4148	-	protein of unknown function DUF81
4068	 70.07	0	4435583..4436494	+	303	188583354	-	Mpop_4149	-	beta-lactamase domain protein
4069	 70.28	0	4436506..4436892	+	128	188583355	-	Mpop_4150	-	Rhodanese domain protein
4070	 68.19	0	4436987..4437709	+	240	188583356	-	Mpop_4151	-	RNA polymerase, sigma-24 subunit, ECF subfamily
4071	 66.48	0	4437743..4438786	+	347	188583357	-	Mpop_4152	-	protein of unknown function DUF395 YeeE/YedE
4072	 65.83	0	4438800..4439159	-	119	188583358	-	Mpop_4153	-	transcriptional regulator, ArsR family
4073	 64.58	-1	4439190..4439477	-	95	188583359	-	Mpop_4154	-	SoxS
4074	 63.19	-1	4439789..4440364	+	191	188583360	-	Mpop_4155	-	putative thioredoxin
4075	 67.09	0	4440532..4441008	+	158	188583361	-	Mpop_4156	-	cytochrome c class I
4076	 66.45	0	4441036..4441506	+	156	188583362	-	Mpop_4157	-	sulfur oxidation protein SoxY
4077	 57.58	-2	4441546..4441875	+	109	188583363	-	Mpop_4158	-	Sulphur oxidation protein SoxZ
4078	 66.09	0	4441934..4442800	+	288	188583364	-	Mpop_4159	-	putative sulfur oxidation protein (SoxA); cytochrome c precursor
4079	 68.15	0	4442816..4444495	+	559	188583365	-	Mpop_4160	-	5'-Nucleotidase domain protein
4080	 66.90	0	4444549..4445841	+	430	188583366	-	Mpop_4161	-	oxidoreductase molybdopterin binding
4081	 65.19	-1	4445825..4446502	+	225	188583367	-	Mpop_4162	-	putative sulfite oxidase cytochrome subunit (SoxD)
4082	 67.61	0	4446499..4447449	+	316	188583368	-	Mpop_4163	-	beta-lactamase domain protein
4083	 62.77	-1	4447512..4447973	+	153	188583369	-	Mpop_4164	-	protein of unknown function DUF1791
4084	 68.68	0	4449862..4451205	+	447	188583370	-	Mpop_4167	-	transposase IS4 family protein
4085	 67.46	0	4451815..4452066	+	83	188583371	-	Mpop_4168	-	hypothetical protein
4086	 72.27	0	4452067..4452762	-	231	188583372	-	Mpop_4169	-	protein of unknown function DUF125 transmembrane
4087	 69.60	0	4452768..4453313	-	181	188583373	-	Mpop_4170	-	cytochrome B561
4088	 68.41	0	4453681..4454538	-	285	188583374	-	Mpop_4171	-	Ferritin Dps family protein
4089	 70.61	0	4454802..4455029	+	75	188583375	-	Mpop_4172	-	hypothetical protein
4090	 72.00	0	4455550..4456449	-	299	188583376	-	Mpop_4173	-	hypothetical protein
4091	 67.29	0	4456797..4458239	-	480	188583377	-	Mpop_4174	-	integrase family protein
4092	 65.62	-1	4458820..4459491	+	223	188583378	-	Mpop_4175	-	hypothetical protein
4093	 67.12	0	4460309..4460968	-	219	188583379	-	Mpop_4176	-	protein of unknown function DUF159
4094	 66.38	0	4461787..4464981	-	1064	188583380	-	Mpop_4178	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
4095	 72.60	0	4465094..4466356	-	420	188583381	-	Mpop_4179	-	efflux transporter, RND family, MFP subunit
4096	 69.43	0	4466445..4467059	+	204	188583382	-	Mpop_4180	-	transcriptional regulator, TetR family
4097	 65.94	0	4467210..4467623	-	137	188583383	-	Mpop_4181	-	GreA/GreB family elongation factor
4098	 64.76	-1	4468536..4469744	-	402	188583384	-	Mpop_4182	-	transposase mutator type
4099	 64.00	-1	4469904..4470353	+	149	188583385	-	Mpop_4183	-	GreA/GreB family elongation factor
4100	 71.83	0	4470539..4471390	-	283	188583386	-	Mpop_4184	-	ABC transporter related
4101	 72.30	0	4471387..4472238	-	283	188583387	-	Mpop_4185	-	binding-protein-dependent transport systems inner membrane component
4102	 70.20	0	4472247..4473689	-	480	188583388	-	Mpop_4186	-	putative ABC transporter, substrate-binding protein
4103	 70.33	0	4473982..4474746	+	254	188583389	-	Mpop_4187	-	transcriptional regulator, Crp/Fnr family
4104	 71.18	0	4474915..4475535	+	206	188583390	-	Mpop_4188	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
4105	 77.08	+1	4475575..4476534	-	319	188583391	-	Mpop_4189	-	HEAT domain containing protein
4106	 65.38	-1	4476540..4476773	-	77	188583392	-	Mpop_4190	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
4107	 66.95	0	4476789..4478531	-	580	188583393	-	Mpop_4191	-	fumarate reductase/succinate dehydrogenase flavoprotein domain protein
4108	 72.67	0	4478543..4478842	-	99	188583394	-	Mpop_4192	-	protein of unknown function DUF971
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.