IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3748	 71.35	0	4062146..4063534	+	462	188583034	-	Mpop_3812	-	ABC transporter related
3749	 62.48	-1	4064566..4065162	-	198	188583035	-	Mpop_3814	-	Glutathione S-transferase domain
3750	 64.29	-1	4065280..4065657	+	125	188583036	-	Mpop_3815	-	transcriptional regulator, HxlR family
3751	 63.77	-1	4065875..4066150	+	91	188583037	-	Mpop_3816	-	transposase IS3/IS911 family protein
3752	 66.55	0	4066189..4067058	+	289	188583038	-	Mpop_3817	-	Integrase catalytic region
3753	 57.75	-2	4067381..4068019	+	212	188583039	-	Mpop_3818	-	transcriptional regulator, TetR family
3754	 61.30	-2	4068231..4068863	+	210	188583040	-	Mpop_3819	-	Carboxymuconolactone decarboxylase
3755	 60.23	-2	4068860..4069822	+	320	188583041	-	Mpop_3820	-	superoxide dismutase (sodC), Cu-Zn family
3756	 60.46	-2	4069891..4070502	+	203	188583042	-	Mpop_3821	-	Glutathione S-transferase domain
3757	 57.00	-2	4070517..4070723	+	68	188583043	-	Mpop_3822	-	hypothetical protein
3758	 64.19	-1	4070830..4071597	+	255	188583044	-	Mpop_3823	-	hypothetical protein
3759	 67.64	0	4071817..4073253	+	478	188583045	-	Mpop_3824	-	transposase IS4 family protein
3760	 57.75	-2	4073526..4073996	-	156	188583046	-	Mpop_3825	-	hypothetical protein
3761	 64.22	-1	4074050..4074580	-	176	188583047	-	Mpop_3826	-	hypothetical protein
3762	 66.74	0	4074774..4076192	+	472	188583048	-	Mpop_3827	-	integral membrane sensor signal transduction histidine kinase
3763	 61.24	-2	4076189..4076851	+	220	188583049	-	Mpop_3828	-	two component transcriptional regulator, LuxR family
3764	 65.66	-1	4077120..4077515	+	131	188583050	-	Mpop_3829	-	hypothetical protein
3765	 62.61	-1	4077552..4077773	+	73	188583051	-	Mpop_3830	-	hypothetical protein
3766	 58.23	-2	4077933..4078169	+	78	188583052	-	Mpop_3831	-	hypothetical protein
3767	 63.69	-1	4078201..4078938	+	245	188583053	-	Mpop_3832	-	transcriptional regulator, Crp/Fnr family
3768	 62.92	-1	4079593..4079832	+	79	188583054	-	Mpop_3834	-	transcriptional regulator, XRE family
3769	 67.65	0	4080541..4081149	+	202	188583055	-	Mpop_3835	-	hypothetical protein
3770	 67.75	0	4081221..4082054	+	277	188583056	-	Mpop_3836	-	hypothetical protein
3771	 68.30	0	4082051..4084198	+	715	188583057	-	Mpop_3837	-	AAA ATPase central domain protein
3772	 65.38	-1	4084186..4084497	+	103	188583058	-	Mpop_3838	-	hypothetical protein
3773	 62.68	-1	4085136..4085411	+	91	188583059	-	Mpop_3840	-	transposase IS3/IS911 family protein
3774	 71.83	0	4085476..4085979	-	167	188583060	-	Mpop_3841	-	transposase IS4 family protein
3775	 59.12	-2	4086187..4088067	-	626	188583061	-	Mpop_3842	-	Resolvase domain
3776	 56.69	-2	4088182..4090305	-	707	188583062	-	Mpop_3843	-	Resolvase domain
3777	 62.77	-1	4091219..4091911	-	230	188583063	-	Mpop_3844	-	hypothetical protein
3778	 59.81	-2	4091895..4092521	-	208	188583064	-	Mpop_3845	-	hypothetical protein
3779	 60.39	-2	4094476..4095144	-	222	188583065	-	Mpop_3847	-	hypothetical protein
3780	 62.05	-1	4096270..4096875	+	201	188583066	-	Mpop_3849	-	protein of unknown function DUF433
3781	 65.29	-1	4096872..4097306	+	144	188583067	-	Mpop_3850	-	putative plasmid stabilization protein
3782	 66.96	0	4097599..4097940	-	113	188583068	-	Mpop_3851	-	hypothetical protein
3783	 59.07	-2	4097971..4098813	-	280	188583069	-	Mpop_3852	-	hypothetical protein
3784	 63.54	-1	4098810..4100312	-	500	188583070	-	Mpop_3853	-	integrase family protein
3785	 70.12	0	4100670..4102841	+	723	188583071	-	Mpop_3854	-	Tetratricopeptide TPR_2 repeat protein
3786	 64.34	-1	4102822..4104066	+	414	188583072	-	Mpop_3855	-	DegT/DnrJ/EryC1/StrS aminotransferase
3787	 56.32	-2	4104166..4104735	-	189	188583073	-	Mpop_3856	-	hypothetical protein
3788	 58.47	-2	4104761..4106053	-	430	188583074	-	Mpop_3857	-	protein of unknown function DUF201
3789	 70.86	0	4106466..4106942	+	158	188583075	-	Mpop_3858	-	hypothetical protein
3790	 71.89	0	4106964..4107212	-	82	188583076	-	Mpop_3859	-	hypothetical protein
3791	 68.35	0	4107212..4107925	-	237	188583077	-	Mpop_3860	-	cyclic nucleotide-binding protein
3792	 71.60	0	4108293..4108454	+	53	188583078	-	Mpop_3861	-	hypothetical protein
3793	 70.40	0	4108451..4109200	+	249	188583079	-	Mpop_3862	-	transcriptional regulator, Crp/Fnr family
3794	 69.53	0	4109300..4109578	-	92	188583080	-	Mpop_3863	-	hypothetical protein
3795	 73.11	0	4110105..4110368	+	87	188583081	-	Mpop_3864	-	hypothetical protein
3796	 76.06	+1	4110483..4110908	+	141	188583082	-	Mpop_3865	-	hypothetical protein
3797	 73.65	0	4110953..4112041	-	362	188583083	-	Mpop_3866	-	Acyl-CoA dehydrogenase type 2 domain
3798	 69.00	0	4112047..4112604	-	185	188583084	-	Mpop_3867	-	OsmC family protein
3799	 75.06	+1	4112615..4113472	-	285	188583085	-	Mpop_3868	-	binding-protein-dependent transport systems inner membrane component
3800	 69.85	0	4113469..4114695	-	408	188583086	-	Mpop_3869	-	twin-arginine translocation pathway signal
3801	 75.26	+1	4114719..4115474	-	251	188583087	-	Mpop_3870	-	ABC transporter related
3802	 67.70	0	4116119..4117573	+	484	188583088	-	Mpop_3871	-	Carbohydrate-selective porin OprB
3803	 68.02	0	4117634..4119037	+	467	188583089	-	Mpop_3872	-	putative monooxygenase
3804	 70.82	0	4119042..4119812	+	256	188583090	-	Mpop_3873	-	ABC transporter related
3805	 70.07	0	4119837..4120718	+	293	188583091	-	Mpop_3874	-	inner-membrane translocator
3806	 70.79	0	4120723..4121766	+	347	188583092	-	Mpop_3875	-	inner-membrane translocator
3807	 68.21	0	4121803..4123167	+	454	188583093	-	Mpop_3876	-	hypothetical protein
3808	 72.94	0	4123164..4123928	+	254	188583094	-	Mpop_3877	-	ABC transporter related
3809	 74.90	+1	4123959..4125209	+	416	188583095	-	Mpop_3878	-	Acyl-CoA dehydrogenase type 2 domain
3810	 68.86	0	4125445..4126449	+	334	188583096	-	Mpop_3879	-	hypothetical protein
3811	 69.31	0	4126572..4131260	-	1562	188583097	-	Mpop_3880	-	flagellin hook IN repeat protein
3812	 67.16	0	4131873..4132880	+	335	188583098	-	Mpop_3881	-	transcriptional regulator, AraC family
3813	 69.60	0	4133043..4133519	+	158	188583099	-	Mpop_3882	-	heat shock protein Hsp20
3814	 72.69	0	4133772..4134584	+	270	188583100	-	Mpop_3883	-	UspA domain protein
3815	 74.00	+1	4134689..4135138	+	149	188583101	-	Mpop_3884	-	hypothetical protein
3816	 75.25	+1	4135160..4135975	-	271	188583102	-	Mpop_3885	-	UspA domain protein
3817	 72.09	0	4136132..4136776	-	214	188583103	-	Mpop_3886	-	transport-associated
3818	 71.30	0	4136811..4137026	-	71	188583104	-	Mpop_3887	-	hypothetical protein
3819	 73.58	0	4137288..4138082	+	264	188583105	-	Mpop_3888	-	UspA domain protein
3820	 72.32	0	4138200..4138889	-	229	188583106	-	Mpop_3889	-	transcriptional regulator, Crp/Fnr family
3821	 72.61	0	4139187..4139741	-	184	188583107	-	Mpop_3890	-	response regulator receiver protein
3822	 71.03	0	4139777..4140418	-	213	188583108	-	Mpop_3891	-	two component transcriptional regulator, LuxR family
3823	 71.80	0	4140422..4141960	-	512	188583109	-	Mpop_3892	-	PAS/PAC sensor signal transduction histidine kinase
3824	 72.86	0	4142331..4143266	+	311	188583110	-	Mpop_3893	-	UspA domain protein
3825	 72.22	0	4143465..4144526	+	353	188583111	-	Mpop_3894	-	response regulator receiver modulated metal dependent phosphohydrolase
3826	 74.59	+1	4144625..4147387	-	920	188583112	-	Mpop_3895	-	multi-sensor hybrid histidine kinase
3827	 68.42	0	4147440..4148861	-	473	188583113	-	Mpop_3896	-	hypothetical protein
3828	 70.43	0	4149168..4149698	-	176	188583114	-	Mpop_3897	-	TadE family protein
3829	 70.04	0	4149794..4150327	-	177	188583115	-	Mpop_3898	-	TadE family protein
3830	 75.17	+1	4150710..4152521	-	603	188583116	-	Mpop_3899	-	allophanate hydrolase
3831	 72.32	0	4152838..4156377	-	1179	188583117	-	Mpop_3900	-	urea carboxylase
3832	 66.36	0	4156370..4157014	-	214	188583118	-	Mpop_3901	-	hypothetical protein
3833	 72.69	0	4157030..4157842	-	270	188583119	-	Mpop_3902	-	hypothetical protein
3834	 71.35	0	4158084..4158446	-	120	188583120	-	Mpop_3903	-	protein of unknown function DUF861 cupin_3
3835	 68.27	0	4158458..4159831	-	457	188583121	-	Mpop_3904	-	glutamine synthetase, type III
3836	 72.75	0	4159833..4160621	-	262	188583122	-	Mpop_3905	-	Creatininase
3837	 71.20	0	4160618..4161565	-	315	188583123	-	Mpop_3906	-	ABC transporter related
3838	 72.16	0	4161562..4162635	-	357	188583124	-	Mpop_3907	-	binding-protein-dependent transport systems inner membrane component
3839	 68.84	0	4162650..4163660	-	336	188583125	-	Mpop_3908	-	ABC transport system substrate-binding protein
3840	 74.48	+1	4164272..4165192	-	306	188583126	-	Mpop_3909	-	short-chain dehydrogenase/reductase SDR
3841	 68.70	0	4165579..4166415	+	278	188583127	-	Mpop_3910	-	alpha/beta hydrolase fold
3842	 72.54	0	4166426..4166953	-	175	188583128	-	Mpop_3911	-	glutathione-dependent formaldehyde-activating GFA
3843	 72.51	0	4167447..4167959	+	170	188583129	-	Mpop_3912	-	GAF domain protein
3844	 70.78	0	4168107..4168325	+	72	188583130	-	Mpop_3913	-	hypothetical protein
3845	 76.07	+1	4168516..4168749	+	77	188583131	-	Mpop_3914	-	hypothetical protein
3846	 75.72	+1	4168755..4168997	+	80	188583132	-	Mpop_3915	-	hypothetical protein
3847	 74.37	+1	4169112..4169825	+	237	188583133	-	Mpop_3916	-	molybdate ABC transporter, inner membrane subunit
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.