IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3669	 58.33	-2	3970169..3970408	-	79	188582955	-	Mpop_3721	-	hypothetical protein
3670	 65.18	-1	3970931..3971266	-	111	188582956	-	Mpop_3722	-	hypothetical protein
3671	 64.71	-1	3971283..3971690	-	135	188582957	-	Mpop_3723	-	hypothetical protein
3672	 65.23	-1	3971804..3972361	-	185	188582958	-	Mpop_3724	-	heat shock protein Hsp20
3673	 63.77	-1	3972419..3972901	-	160	188582959	-	Mpop_3725	-	heat shock protein Hsp20
3674	 59.45	-2	3973361..3973831	-	156	188582960	-	Mpop_3727	-	Thioredoxin domain
3675	 62.65	-1	3974007..3975227	+	406	188582961	-	Mpop_3728	-	signal transduction histidine kinase
3676	 67.58	0	3975396..3978020	+	874	188582962	-	Mpop_3729	-	ATP-dependent chaperone ClpB
3677	 65.40	-1	3980198..3980434	-	78	188582963	-	Mpop_3732	-	hypothetical protein
3678	 64.10	-1	3983591..3984019	+	142	188582964	-	Mpop_3735	-	hypothetical protein
3679	 58.74	-2	3984680..3985171	+	163	188582965	-	Mpop_3736	-	sigma 54 modulation protein/ribosomal protein S30EA
3680	 68.68	0	3985567..3986910	+	447	188582966	-	Mpop_3737	-	transposase IS4 family protein
3681	 64.11	-1	3987079..3987833	-	251	188582967	-	Mpop_3738	-	Transposase and inactivated derivatives-like protein
3682	 65.06	-1	3989135..3989881	-	248	188582968	-	Mpop_3739	-	glutaredoxin
3683	 72.02	0	3990005..3990172	-	55	188582969	-	Mpop_3740	-	hypothetical protein
3684	 70.33	0	3990439..3990684	-	81	188582970	-	Mpop_3741	-	hypothetical protein
3685	 72.58	0	3991047..3991469	+	140	188582971	-	Mpop_3742	-	hypothetical protein
3686	 65.66	0	3991589..3992086	+	165	188582972	-	Mpop_3743	-	PRC-barrel domain protein
3687	 70.37	0	3992273..3992488	+	71	188582973	-	Mpop_3744	-	hypothetical protein
3688	 72.77	0	3992572..3992964	+	130	188582974	-	Mpop_3745	-	hypothetical protein
3689	 73.10	0	3992948..3995014	+	688	188582975	-	Mpop_3746	-	multi-sensor signal transduction histidine kinase
3690	 71.92	0	3995033..3995698	+	221	188582976	-	Mpop_3747	-	two component transcriptional regulator, LuxR family
3691	 71.13	0	3995783..3997081	-	432	188582977	-	Mpop_3748	-	hypothetical protein
3692	 70.28	0	3997148..3997507	-	119	188582978	-	Mpop_3749	-	MgtC/SapB transporter
3693	 61.48	-2	3997610..3998728	-	372	188582979	-	Mpop_3750	-	peptidase M50
3694	 65.05	-1	3999245..3999430	+	61	188582980	-	Mpop_3751	-	hypothetical protein
3695	 63.02	-1	3999499..4001910	-	803	188582981	-	Mpop_3752	-	ATP-dependent protease La
3696	 64.22	-1	4001924..4002331	-	135	188582982	-	Mpop_3753	-	hypothetical protein
3697	 68.68	0	4002482..4003825	+	447	188582983	-	Mpop_3754	-	transposase IS4 family protein
3698	 62.41	-1	4004056..4004337	-	93	188582984	-	Mpop_3755	-	hypothetical protein
3699	 64.91	-1	4004334..4005245	-	303	188582985	-	Mpop_3756	-	chaperone DnaJ domain protein
3700	 68.68	0	4005478..4006821	-	447	188582986	-	Mpop_3757	-	transposase IS4 family protein
3701	 68.43	0	4007010..4007576	+	188	188582987	-	Mpop_3758	-	hypothetical protein
3702	 69.44	0	4007861..4008112	+	83	188582988	-	Mpop_3759	-	hypothetical protein
3703	 67.18	0	4008096..4008488	+	130	188582989	-	Mpop_3760	-	hypothetical protein
3704	 63.00	-1	4008485..4008811	+	108	188582990	-	Mpop_3761	-	hypothetical protein
3705	 62.99	-1	4008742..4009149	-	135	188582991	-	Mpop_3762	-	transcriptional regulator, XRE family
3706	 62.90	-1	4009330..4009515	-	61	188582992	-	Mpop_3763	-	hypothetical protein
3707	 64.96	-1	4011219..4011452	-	77	188582993	-	Mpop_3765	-	hypothetical protein
3708	 62.72	-1	4011805..4012767	-	320	188582994	-	Mpop_3766	-	transcriptional regulator, LysR family
3709	 62.14	-1	4013070..4014263	+	397	188582995	-	Mpop_3767	-	Extracellular ligand-binding receptor
3710	 67.01	0	4014390..4015265	+	291	188582996	-	Mpop_3768	-	inner-membrane translocator
3711	 68.52	0	4015262..4017043	+	593	188582997	-	Mpop_3769	-	ABC transporter related
3712	 68.29	0	4017043..4017780	+	245	188582998	-	Mpop_3770	-	ABC transporter related
3713	 64.25	-1	4017862..4018563	+	233	188582999	-	Mpop_3771	-	cyclase family protein
3714	 69.43	0	4018616..4020025	+	469	188583000	-	Mpop_3772	-	Amidase
3715	 65.28	-1	4020516..4020803	-	95	188583001	-	Mpop_3773	-	nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3716	 63.66	-1	4021069..4022433	+	454	188583002	-	Mpop_3774	-	putative nitrate transporter component, NrtA
3717	 61.21	-2	4022443..4022772	+	109	188583003	-	Mpop_3775	-	hypothetical protein
3718	 60.19	-2	4022965..4023072	+	35	188583004	-	Mpop_3776	-	hypothetical protein
3719	 64.09	-1	4023332..4024342	-	336	188583005	-	Mpop_3778	-	transcriptional regulator, LysR family
3720	 64.76	-1	4024529..4025737	+	402	188583006	-	Mpop_3779	-	transposase mutator type
3721	 60.49	-2	4026746..4027279	+	177	188583007	-	Mpop_3781	-	binding-protein-dependent transport systems inner membrane component
3722	 70.58	0	4027771..4028528	+	252	188583008	-	Mpop_3783	-	hypothetical protein
3723	 60.28	-2	4029140..4029937	+	265	188583009	-	Mpop_3784	-	ABC transporter related
3724	 58.97	-2	4029949..4030260	+	103	188583010	-	Mpop_3785	-	hypothetical protein
3725	 61.81	-1	4030260..4030547	+	95	188583011	-	Mpop_3786	-	putative ScnA-like protein
3726	 61.64	-1	4030540..4031196	+	218	188583012	-	Mpop_3787	-	Nitrile hydratase alpha chain
3727	 71.00	0	4031618..4032448	-	276	188583013	-	Mpop_3788	-	hypothetical protein
3728	 73.54	0	4032708..4033376	-	222	188583014	-	Mpop_3790	-	hypothetical protein
3729	 68.29	0	4033897..4035375	-	492	188583015	-	Mpop_3791	-	PAS/PAC sensor hybrid histidine kinase
3730	 69.78	0	4035397..4036617	-	406	188583016	-	Mpop_3792	-	putative PAS/PAC sensor protein
3731	 65.17	-1	4036674..4037431	-	252	188583017	-	Mpop_3793	-	Transposase and inactivated derivatives-like protein
3732	 69.68	0	4037751..4039877	+	708	188583018	-	Mpop_3794	-	integral membrane sensor hybrid histidine kinase
3733	 71.29	0	4040090..4042513	+	807	188583019	-	Mpop_3795	-	multi-sensor hybrid histidine kinase
3734	 63.55	-1	4042540..4042860	-	106	188583020	-	Mpop_3796	-	putative DNA-binding protein
3735	 67.06	0	4042951..4043463	-	170	188583021	-	Mpop_3797	-	protein of unknown function DUF892
3736	 62.77	-1	4043741..4043971	+	76	188583022	-	Mpop_3798	-	hypothetical protein
3737	 64.80	-1	4045624..4047762	-	712	188583023	-	Mpop_3800	-	TonB-dependent siderophore receptor
3738	 65.35	-1	4049564..4050094	-	176	188583024	-	Mpop_3802	-	hypothetical protein
3739	 71.43	0	4050106..4051071	-	321	188583025	-	Mpop_3803	-	hypothetical protein
3740	 72.18	0	4051049..4051864	-	271	188583026	-	Mpop_3804	-	ABC transporter related
3741	 73.83	+1	4051861..4052907	-	348	188583027	-	Mpop_3805	-	transport system permease protein
3742	 72.22	0	4052904..4053749	-	281	188583028	-	Mpop_3806	-	periplasmic binding protein
3743	 67.73	0	4053757..4055724	-	655	188583029	-	Mpop_3807	-	TonB-dependent receptor plug
3744	 68.37	0	4056564..4058789	+	741	188583030	-	Mpop_3808	-	TonB-dependent siderophore receptor
3745	 73.56	0	4058816..4060381	+	521	188583031	-	Mpop_3809	-	extracellular solute-binding protein family 5
3746	 72.63	0	4060378..4061316	+	312	188583032	-	Mpop_3810	-	binding-protein-dependent transport systems inner membrane component
3747	 69.65	0	4061313..4062149	+	278	188583033	-	Mpop_3811	-	binding-protein-dependent transport systems inner membrane component
3748	 71.35	0	4062146..4063534	+	462	188583034	-	Mpop_3812	-	ABC transporter related
3749	 62.48	-1	4064566..4065162	-	198	188583035	-	Mpop_3814	-	Glutathione S-transferase domain
3750	 64.29	-1	4065280..4065657	+	125	188583036	-	Mpop_3815	-	transcriptional regulator, HxlR family
3751	 63.77	-1	4065875..4066150	+	91	188583037	-	Mpop_3816	-	transposase IS3/IS911 family protein
3752	 66.55	0	4066189..4067058	+	289	188583038	-	Mpop_3817	-	Integrase catalytic region
3753	 57.75	-2	4067381..4068019	+	212	188583039	-	Mpop_3818	-	transcriptional regulator, TetR family
3754	 61.30	-2	4068231..4068863	+	210	188583040	-	Mpop_3819	-	Carboxymuconolactone decarboxylase
3755	 60.23	-2	4068860..4069822	+	320	188583041	-	Mpop_3820	-	superoxide dismutase (sodC), Cu-Zn family
3756	 60.46	-2	4069891..4070502	+	203	188583042	-	Mpop_3821	-	Glutathione S-transferase domain
3757	 57.00	-2	4070517..4070723	+	68	188583043	-	Mpop_3822	-	hypothetical protein
3758	 64.19	-1	4070830..4071597	+	255	188583044	-	Mpop_3823	-	hypothetical protein
3759	 67.64	0	4071817..4073253	+	478	188583045	-	Mpop_3824	-	transposase IS4 family protein
3760	 57.75	-2	4073526..4073996	-	156	188583046	-	Mpop_3825	-	hypothetical protein
3761	 64.22	-1	4074050..4074580	-	176	188583047	-	Mpop_3826	-	hypothetical protein
3762	 66.74	0	4074774..4076192	+	472	188583048	-	Mpop_3827	-	integral membrane sensor signal transduction histidine kinase
3763	 61.24	-2	4076189..4076851	+	220	188583049	-	Mpop_3828	-	two component transcriptional regulator, LuxR family
3764	 65.66	-1	4077120..4077515	+	131	188583050	-	Mpop_3829	-	hypothetical protein
3765	 62.61	-1	4077552..4077773	+	73	188583051	-	Mpop_3830	-	hypothetical protein
3766	 58.23	-2	4077933..4078169	+	78	188583052	-	Mpop_3831	-	hypothetical protein
3767	 63.69	-1	4078201..4078938	+	245	188583053	-	Mpop_3832	-	transcriptional regulator, Crp/Fnr family
3768	 62.92	-1	4079593..4079832	+	79	188583054	-	Mpop_3834	-	transcriptional regulator, XRE family
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.