IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3559	 73.65	0	3847381..3848067	+	228	188582845	-	Mpop_3606	-	conserved hypothetical proteinn
3560	 67.96	0	3848291..3849451	-	386	188582846	-	Mpop_3607	-	hypothetical protein
3561	 70.59	0	3849696..3853010	+	1104	188582847	-	Mpop_3608	-	transglutaminase domain protein
3562	 73.99	+1	3853007..3855547	+	846	188582848	-	Mpop_3609	-	protein of unknown function DUF404
3563	 72.69	0	3855544..3856440	+	298	188582849	-	Mpop_3610	-	transglutaminase domain protein
3564	 73.69	0	3856449..3857003	-	184	188582850	-	Mpop_3611	-	transcriptional regulator, TetR family
3565	 71.66	0	3857235..3857975	+	246	188582851	-	Mpop_3612	-	short-chain dehydrogenase/reductase SDR
3566	 69.84	0	3858015..3859181	-	388	188582852	-	Mpop_3613	-	major facilitator superfamily MFS_1
3567	 70.94	0	3859460..3860068	-	202	188582853	-	Mpop_3614	-	hypothetical protein
3568	 72.11	0	3860291..3862126	+	611	188582854	-	Mpop_3615	-	beta-lactamase
3569	 67.26	0	3862379..3863902	+	507	188582855	-	Mpop_3616	-	Aldehyde Dehydrogenase
3570	 70.90	0	3864010..3864387	+	125	188582856	-	Mpop_3617	-	hypothetical protein
3571	 69.50	0	3864423..3864704	+	93	188582857	-	Mpop_3618	-	hypothetical protein
3572	 66.91	0	3864814..3865230	+	138	188582858	-	Mpop_3619	-	protein of unknown function DUF1486
3573	 72.95	0	3865258..3866547	-	429	188582859	-	Mpop_3620	-	Orn/DAP/Arg decarboxylase 2
3574	 72.66	0	3866553..3868070	-	505	188582860	-	Mpop_3621	-	AMP-dependent synthetase and ligase
3575	 66.67	0	3868078..3868329	-	83	188582861	-	Mpop_3622	-	hypothetical protein
3576	 75.62	+1	3868538..3869062	+	174	188582862	-	Mpop_3623	-	DoxX family protein
3577	 71.19	0	3869019..3870500	-	493	188582863	-	Mpop_3624	-	major facilitator superfamily MFS_1
3578	 71.28	0	3870776..3871663	+	295	188582864	-	Mpop_3625	-	conserved hypothetical protein; putative exported protein
3579	 72.81	0	3871748..3873553	-	601	188582865	-	Mpop_3626	-	Adenine deaminase
3580	 71.16	0	3873638..3874372	-	244	188582866	-	Mpop_3627	-	ribosomal RNA methyltransferase RrmJ/FtsJ
3581	 66.23	0	3874628..3875083	+	151	188582867	-	Mpop_3628	-	calcium/calmodulin dependent protein kinase II association-domain protein
3582	 72.79	0	3875237..3876379	-	380	188582868	-	Mpop_3629	-	Ppx/GppA phosphatase
3583	 73.73	0	3876527..3877687	-	386	188582869	-	Mpop_3630	-	glycosyl transferase family 2
3584	 74.34	+1	3877684..3878439	-	251	188582870	-	Mpop_3631	-	phospholipid/glycerol acyltransferase
3585	 68.81	0	3878503..3880041	-	512	188582871	-	Mpop_3632	-	phytoene desaturase
3586	 74.60	+1	3880112..3880993	-	293	188582872	-	Mpop_3633	-	glutamine amidotransferase class-I
3587	 73.18	0	3881104..3882315	-	403	188582873	-	Mpop_3634	-	ABC-2 type transporter
3588	 76.78	+1	3882312..3883280	-	322	188582874	-	Mpop_3635	-	ABC transporter related
3589	 75.52	+1	3883288..3883716	-	142	188582875	-	Mpop_3636	-	hypothetical protein
3590	 68.17	0	3883716..3885308	-	530	188582876	-	Mpop_3637	-	phytoene desaturase
3591	 73.39	0	3885481..3886983	-	500	188582877	-	Mpop_3638	-	hypothetical protein
3592	 62.21	-1	3887083..3887643	-	186	188582878	-	Mpop_3639	-	hypothetical protein
3593	 66.67	0	3887656..3887970	-	104	188582879	-	Mpop_3640	-	hypothetical protein
3594	 74.32	+1	3888095..3888904	-	269	188582880	-	Mpop_3641	-	tRNA/rRNA methyltransferase (SpoU)
3595	 69.62	0	3888911..3889384	-	157	188582881	-	Mpop_3642	-	MaoC domain protein dehydratase
3596	 72.46	0	3889587..3890207	+	206	188582882	-	Mpop_3643	-	cation efflux protein
3597	 74.20	+1	3890260..3891108	+	282	188582883	-	Mpop_3644	-	metallophosphoesterase
3598	 64.41	-1	3891202..3891423	+	73	188582884	-	Mpop_3645	-	hypothetical protein
3599	 75.68	+1	3891549..3892691	+	380	188582885	-	Mpop_3646	-	hypothetical protein
3600	 72.22	0	3892726..3893337	+	203	188582886	-	Mpop_3647	-	Glutathione S-transferase domain
3601	 72.77	0	3893406..3893618	+	70	188582887	-	Mpop_3648	-	hypothetical protein
3602	 65.82	0	3893896..3895077	-	393	188582888	-	Mpop_3649	-	Non-specific serine/threonine protein kinase
3603	 73.28	0	3895289..3896422	+	377	188582889	-	Mpop_3650	-	membrane protein
3604	 68.76	0	3896413..3897033	+	206	188582890	-	Mpop_3651	-	toluene tolerance family protein
3605	 70.18	0	3897038..3897151	-	37	188582891	-	Mpop_3652	-	hypothetical protein
3606	 69.59	0	3897207..3898403	+	398	188582892	-	Mpop_3653	-	hopanoid biosynthesis associated glycosyl transferase protein HpnI
3607	 64.21	-1	3898457..3899881	+	474	188582893	-	Mpop_3654	-	hopanoid biosynthesis associated radical SAM protein HpnJ
3608	 75.92	+1	3900010..3900852	+	280	188582894	-	Mpop_3655	-	hopanoid biosynthesis associated protein HpnK
3609	 73.99	+1	3901004..3901522	+	172	188582895	-	Mpop_3656	-	hypothetical protein
3610	 69.57	0	3901554..3904202	-	882	188582896	-	Mpop_3657	-	hopanoid biosynthesis associated RND transporter like protein HpnN
3611	 63.57	-1	3904916..3906079	+	387	188582897	-	Mpop_3658	-	hopanoid biosynthesis associated radical SAM protein HpnH
3612	 76.90	+1	3906200..3906883	-	227	188582898	-	Mpop_3659	-	hypothetical protein
3613	 71.98	0	3906907..3908073	-	388	188582899	-	Mpop_3660	-	polysaccharide export protein
3614	 73.12	0	3908388..3908960	+	190	188582900	-	Mpop_3661	-	carbohydrate kinase, thermoresistant glucokinase family
3615	 73.01	0	3908980..3909783	+	267	188582901	-	Mpop_3662	-	Cof-like hydrolase
3616	 75.59	+1	3910026..3910955	+	309	188582902	-	Mpop_3663	-	Lytic transglycosylase catalytic
3617	 67.72	0	3911114..3911302	+	62	188582903	-	Mpop_3664	-	ribosomal protein L32
3618	 75.31	+1	3911337..3911579	-	80	188582904	-	Mpop_3665	-	hypothetical protein
3619	 65.68	0	3911766..3912374	-	202	188582905	-	Mpop_3666	-	polyhydroxyalkonate synthesis repressor, PhaR
3620	 69.87	0	3912698..3913882	+	394	188582906	-	Mpop_3667	-	acetyl-CoA acetyltransferase
3621	 65.57	-1	3914144..3914872	+	242	188582907	-	Mpop_3668	-	acetoacetyl-CoA reductase
3622	 71.79	0	3915034..3916008	+	324	188582908	-	Mpop_3669	-	lipid A biosynthesis acyltransferase
3623	 72.38	0	3916037..3917296	-	419	188582909	-	Mpop_3670	-	peptidase M29 aminopeptidase II
3624	 66.67	0	3917369..3917662	-	97	188582910	-	Mpop_3671	-	hypothetical protein
3625	 73.06	0	3918065..3919519	-	484	188582911	-	Mpop_3672	-	FAD linked oxidase domain protein
3626	 71.12	0	3919724..3920419	+	231	188582912	-	Mpop_3673	-	fumarylacetoacetate (FAA) hydrolase
3627	 74.24	+1	3920416..3920943	+	175	188582913	-	Mpop_3674	-	NUDIX hydrolase
3628	 62.88	-1	3921424..3921555	+	43	188582914	-	Mpop_3675	-	hypothetical protein
3629	 61.50	-2	3923217..3924242	-	341	188582915	-	Mpop_3678	-	hypothetical protein
3630	 63.77	-1	3924799..3925281	+	160	188582916	-	Mpop_3679	-	heat shock protein Hsp20
3631	 65.23	-1	3925339..3925896	+	185	188582917	-	Mpop_3680	-	heat shock protein Hsp20
3632	 62.62	-1	3926010..3926330	+	106	188582918	-	Mpop_3681	-	hypothetical protein
3633	 63.77	-1	3926429..3926773	+	114	188582919	-	Mpop_3682	-	hypothetical protein
3634	 66.67	0	3926799..3927551	+	250	188582920	-	Mpop_3683	-	ETC complex I subunit conserved region
3635	 61.63	-1	3927682..3928098	+	138	188582921	-	Mpop_3684	-	hypothetical protein
3636	 62.74	-1	3928206..3929402	+	398	188582922	-	Mpop_3685	-	efflux transporter, RND family, MFP subunit
3637	 63.28	-1	3929641..3930201	+	186	188582923	-	Mpop_3686	-	hypothetical protein
3638	 68.68	0	3930324..3931667	+	447	188582924	-	Mpop_3687	-	transposase IS4 family protein
3639	 62.73	-1	3932398..3932829	-	143	188582925	-	Mpop_3688	-	hypothetical protein
3640	 66.27	0	3934230..3934991	-	253	188582926	-	Mpop_3690	-	putative ubiquitin-activating enzyme
3641	 68.82	0	3934984..3936609	-	541	188582927	-	Mpop_3691	-	putative adenylate/guanylate cyclase
3642	 67.47	0	3936624..3937244	-	206	188582928	-	Mpop_3692	-	putative adenylate/guanylate cyclase
3643	 68.21	0	3937556..3938335	+	259	188582929	-	Mpop_3693	-	UBA/THIF-type NAD/FAD binding protein
3644	 65.93	0	3938519..3940549	-	676	188582930	-	Mpop_3694	-	integral membrane sensor signal transduction histidine kinase
3645	 68.20	0	3940537..3941907	-	456	188582931	-	Mpop_3695	-	two component, sigma54 specific, transcriptional regulator, Fis family
3646	 68.01	0	3942037..3943674	-	545	188582932	-	Mpop_3696	-	major facilitator superfamily MFS_1
3647	 62.61	-1	3944160..3946355	+	731	188582933	-	Mpop_3697	-	TonB-dependent receptor
3648	 63.70	-1	3946409..3946948	+	179	188582934	-	Mpop_3698	-	hypothetical protein
3649	 65.25	-1	3946945..3947931	+	328	188582935	-	Mpop_3699	-	Cytochrome-c peroxidase
3650	 65.91	0	3948016..3948939	+	307	188582936	-	Mpop_3700	-	transcriptional regulator, LysR family
3651	 64.18	-1	3949153..3950319	+	388	188582937	-	Mpop_3701	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
3652	 67.06	0	3950407..3950910	+	167	188582938	-	Mpop_3702	-	HPP family protein?
3653	 66.77	0	3952674..3953663	-	329	188582939	-	Mpop_3704	-	hypothetical protein
3654	 70.41	0	3953765..3955018	-	417	188582940	-	Mpop_3705	-	hypothetical protein
3655	 71.59	0	3955111..3955455	-	114	188582941	-	Mpop_3706	-	putative transcriptional regulator, ModE family
3656	 71.78	0	3955551..3956801	-	416	188582942	-	Mpop_3707	-	molybdenum cofactor synthesis domain protein
3657	 67.92	0	3958032..3958829	+	265	188582943	-	Mpop_3709	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
3658	 66.09	0	3958826..3959518	+	230	188582944	-	Mpop_3710	-	molybdate ABC transporter, inner membrane subunit
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.