IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3467	 71.27	0	3745807..3747108	+	433	188582753	-	Mpop_3513	-	dihydroorotase, multifunctional complex type
3468	 72.09	0	3747105..3747713	+	202	188582754	-	Mpop_3514	-	protein of unknown function DUF205
3469	 73.12	0	3747744..3748937	+	397	188582755	-	Mpop_3515	-	DNA protecting protein DprA
3470	 73.67	0	3749262..3750089	+	275	188582756	-	Mpop_3516	-	lipolytic protein G-D-S-L family
3471	 70.69	0	3750086..3751252	+	388	188582757	-	Mpop_3517	-	hypothetical protein
3472	 73.72	0	3751280..3751960	+	226	188582758	-	Mpop_3518	-	ThiJ/PfpI domain protein
3473	 72.29	0	3752059..3752556	-	165	188582759	-	Mpop_3519	-	Holliday junction resolvase YqgF
3474	 70.64	0	3752553..3753131	-	192	188582760	-	Mpop_3520	-	hypothetical protein
3475	 68.42	0	3753358..3753471	+	37	188582761	-	Mpop_3521	-	hypothetical protein
3476	 65.62	-1	3753622..3753909	+	95	188582762	-	Mpop_3522	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
3477	 69.91	0	3754000..3755481	+	493	188582763	-	Mpop_3523	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
3478	 69.93	0	3755478..3755783	+	101	188582764	-	Mpop_3524	-	hypothetical protein
3479	 64.35	-1	3755848..3756279	-	143	188582765	-	Mpop_3525	-	Excinuclease ABC C subunit domain protein
3480	 66.64	0	3756317..3759487	-	1056	188582766	-	Mpop_3526	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
3481	 70.54	0	3759566..3760906	-	446	188582767	-	Mpop_3527	-	efflux transporter, RND family, MFP subunit
3482	 72.49	0	3761349..3761777	-	142	188582768	-	Mpop_3528	-	hypothetical protein
3483	 71.33	0	3762023..3762622	+	199	188582769	-	Mpop_3529	-	ErfK/YbiS/YcfS/YnhG family protein
3484	 63.53	-1	3763763..3764464	+	233	188582770	-	Mpop_3531	-	Undecaprenyl-phosphate galactose phosphotransferase
3485	 68.63	0	3764662..3765831	+	389	188582771	-	Mpop_3532	-	glycosyl transferase group 1
3486	 71.55	0	3765862..3766824	+	320	188582772	-	Mpop_3533	-	lipopolysaccharide biosynthesis protein
3487	 69.57	0	3766821..3768128	+	435	188582773	-	Mpop_3534	-	polysaccharide export protein
3488	 68.48	0	3768138..3769574	+	478	188582774	-	Mpop_3535	-	hypothetical protein
3489	 70.91	0	3769878..3771008	+	376	188582775	-	Mpop_3536	-	glycosyl transferase group 1
3490	 69.97	0	3771127..3772035	+	302	188582776	-	Mpop_3537	-	glycosyl transferase family 2
3491	 71.34	0	3772032..3773723	+	563	188582777	-	Mpop_3538	-	lipopolysaccharide biosynthesis protein
3492	 74.05	+1	3773710..3774996	+	428	188582778	-	Mpop_3539	-	polysaccharide pyruvyl transferase
3493	 74.38	+1	3774993..3776288	+	431	188582779	-	Mpop_3540	-	glycosyl transferase group 1
3494	 57.45	-2	3776623..3777219	+	198	188582780	-	Mpop_3541	-	transferase hexapeptide repeat containing protein
3495	 70.13	0	3777280..3778146	-	288	188582781	-	Mpop_3542	-	glycoside hydrolase family 16
3496	 72.67	0	3778143..3779291	-	382	188582782	-	Mpop_3543	-	putative glycosyl transferase
3497	 71.69	0	3779647..3781239	+	530	188582783	-	Mpop_3544	-	polysaccharide biosynthesis protein
3498	 66.20	0	3781385..3782026	+	213	188582784	-	Mpop_3545	-	hypothetical protein
3499	 63.70	-1	3782160..3782462	-	100	188582785	-	Mpop_3546	-	hypothetical protein
3500	 67.74	0	3782732..3782917	-	61	188582786	-	Mpop_3547	-	hypothetical protein
3501	 66.32	0	3783007..3784467	-	486	188582787	-	Mpop_3548	-	glycoside hydrolase family 16
3502	 54.52	-2	3784989..3785828	+	279	188582788	-	Mpop_3549	-	methyltransferase FkbM family
3503	 70.13	0	3785916..3787358	-	480	188582789	-	Mpop_3550	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
3504	 63.43	-1	3787607..3788038	-	143	188582790	-	Mpop_3551	-	response regulator receiver protein
3505	 68.58	0	3788401..3789969	+	522	188582791	-	Mpop_3552	-	phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
3506	 72.57	0	3789980..3790453	-	157	188582792	-	Mpop_3553	-	carbon monoxide dehydrogenase subunit G
3507	 70.64	0	3790481..3791185	-	234	188582793	-	Mpop_3554	-	ABC transporter related
3508	 70.04	0	3791178..3791948	-	256	188582794	-	Mpop_3555	-	ABC transporter related
3509	 69.89	0	3791945..3792967	-	340	188582795	-	Mpop_3556	-	inner-membrane translocator
3510	 69.81	0	3792982..3793872	-	296	188582796	-	Mpop_3557	-	inner-membrane translocator
3511	 68.35	0	3793899..3795146	-	415	188582797	-	Mpop_3558	-	Extracellular ligand-binding receptor
3512	 70.72	0	3795213..3797579	-	788	188582798	-	Mpop_3559	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
3513	 71.15	0	3797576..3798088	-	170	188582799	-	Mpop_3560	-	(2Fe-2S)-binding domain protein
3514	 72.35	0	3798085..3798963	-	292	188582800	-	Mpop_3561	-	molybdopterin dehydrogenase FAD-binding
3515	 64.71	-1	3799092..3799805	+	237	188582801	-	Mpop_3562	-	transcriptional regulator, TetR family
3516	 64.24	-1	3799880..3800992	-	370	188582802	-	Mpop_3563	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3517	 67.49	0	3801029..3802489	-	486	188582803	-	Mpop_3564	-	Carbohydrate-selective porin OprB
3518	 70.13	0	3802655..3802972	-	105	188582804	-	Mpop_3565	-	regulatory protein, FmdB family
3519	 65.28	-1	3802975..3804204	-	409	188582805	-	Mpop_3566	-	Formamidase
3520	 65.49	-1	3804372..3805388	-	338	188582806	-	Mpop_3567	-	alpha/beta hydrolase fold
3521	 65.34	-1	3805400..3806152	-	250	188582807	-	Mpop_3568	-	urea ABC transporter, ATP-binding protein UrtE
3522	 63.75	-1	3806166..3806954	-	262	188582808	-	Mpop_3569	-	urea ABC transporter, ATP-binding protein UrtD
3523	 65.14	-1	3806965..3808146	-	393	188582809	-	Mpop_3570	-	urea ABC transporter, permease protein UrtC
3524	 64.08	-1	3808160..3809086	-	308	188582810	-	Mpop_3571	-	urea ABC transporter, permease protein UrtB
3525	 64.14	-1	3809195..3810463	-	422	188582811	-	Mpop_3572	-	ABC transporter substrate-binding protein
3526	 71.07	0	3810799..3814161	+	1120	188582812	-	Mpop_3573	-	integral membrane sensor hybrid histidine kinase
3527	 71.74	0	3814154..3815059	+	301	188582813	-	Mpop_3574	-	two component transcriptional regulator, LuxR family
3528	 69.90	0	3815505..3816308	+	267	188582814	-	Mpop_3575	-	Invasion associated locus B family protein
3529	 71.15	0	3816843..3817601	+	252	188582815	-	Mpop_3576	-	precorrin-6A synthase (deacetylating)
3530	 75.36	+1	3817824..3819158	+	444	188582816	-	Mpop_3577	-	hypothetical protein
3531	 75.49	+1	3819170..3819736	-	188	188582817	-	Mpop_3578	-	hypothetical protein
3532	 66.96	0	3820094..3820783	+	229	188582818	-	Mpop_3579	-	Cobyrinic acid ac-diamide synthase
3533	 72.13	0	3820767..3821114	+	115	188582819	-	Mpop_3580	-	hypothetical protein
3534	 74.84	+1	3821438..3822844	+	468	188582820	-	Mpop_3581	-	rare lipoprotein A
3535	 71.87	0	3822894..3824795	-	633	188582821	-	Mpop_3582	-	hypothetical protein
3536	 65.75	0	3824934..3825260	-	108	188582822	-	Mpop_3583	-	iron-sulfur cluster assembly accessory protein
3537	 71.61	0	3825389..3826642	+	417	188582823	-	Mpop_3584	-	deoxyguanosinetriphosphate triphosphohydrolase
3538	 74.80	+1	3826669..3827172	-	167	188582824	-	Mpop_3585	-	hypothetical protein
3539	 73.38	0	3827331..3827792	+	153	188582825	-	Mpop_3586	-	thioesterase superfamily protein
3540	 68.46	0	3827887..3829671	+	594	188582826	-	Mpop_3587	-	arginyl-tRNA synthetase
3541	 74.53	+1	3829701..3831125	+	474	188582827	-	Mpop_3588	-	Sporulation domain protein
3542	 72.16	0	3831370..3832425	+	351	188582828	-	Mpop_3589	-	Beta-N-acetylhexosaminidase
3543	 68.12	0	3832592..3832867	+	91	188582829	-	Mpop_3590	-	twin-arginine translocation protein, TatA/E family subunit
3544	 71.25	0	3832989..3833468	+	159	188582830	-	Mpop_3591	-	twin-arginine translocation protein, TatB subunit
3545	 64.42	-1	3833465..3834265	+	266	188582831	-	Mpop_3592	-	Sec-independent protein translocase, TatC subunit
3546	 68.96	0	3834421..3835119	+	232	188582832	-	Mpop_3593	-	hypothetical protein
3547	 72.47	0	3835103..3836188	-	361	188582833	-	Mpop_3594	-	putative PAS/PAC sensor protein
3548	 68.53	0	3836407..3836943	+	178	188582834	-	Mpop_3595	-	hypothetical protein
3549	 72.87	0	3836971..3838146	-	391	188582835	-	Mpop_3596	-	major facilitator superfamily MFS_1
3550	 72.45	0	3838569..3839156	+	195	188582836	-	Mpop_3597	-	NADPH-dependent FMN reductase
3551	 72.21	0	3839165..3840139	+	324	188582837	-	Mpop_3598	-	aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein
3552	 69.28	0	3840148..3841026	+	292	188582838	-	Mpop_3599	-	binding-protein-dependent transport systems inner membrane component
3553	 74.87	+1	3841050..3841841	+	263	188582839	-	Mpop_3600	-	ABC transporter related
3554	 70.71	0	3841869..3843056	+	395	188582840	-	Mpop_3601	-	Alkanesulfonate monooxygenase
3555	 70.67	0	3843075..3844049	+	324	188582841	-	Mpop_3602	-	aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein
3556	 71.77	0	3844210..3845169	+	319	188582842	-	Mpop_3603	-	aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein
3557	 75.34	+1	3845198..3846580	+	460	188582843	-	Mpop_3604	-	pyridine nucleotide-disulfide oxidoreductase family
3558	 69.52	0	3846909..3847118	+	69	188582844	-	Mpop_3605	-	hypothetical protein
3559	 73.65	0	3847381..3848067	+	228	188582845	-	Mpop_3606	-	conserved hypothetical proteinn
3560	 67.96	0	3848291..3849451	-	386	188582846	-	Mpop_3607	-	hypothetical protein
3561	 70.59	0	3849696..3853010	+	1104	188582847	-	Mpop_3608	-	transglutaminase domain protein
3562	 73.99	+1	3853007..3855547	+	846	188582848	-	Mpop_3609	-	protein of unknown function DUF404
3563	 72.69	0	3855544..3856440	+	298	188582849	-	Mpop_3610	-	transglutaminase domain protein
3564	 73.69	0	3856449..3857003	-	184	188582850	-	Mpop_3611	-	transcriptional regulator, TetR family
3565	 71.66	0	3857235..3857975	+	246	188582851	-	Mpop_3612	-	short-chain dehydrogenase/reductase SDR
3566	 69.84	0	3858015..3859181	-	388	188582852	-	Mpop_3613	-	major facilitator superfamily MFS_1
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.