IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3409	 66.20	0	3683471..3684328	-	285	188582695	-	Mpop_3454	-	cytochrome c oxidase subunit III
3410	 68.14	0	3684473..3685081	-	202	188582696	-	Mpop_3455	-	cytochrome c oxidase assembly protein CtaG/Cox11
3411	 68.48	0	3685094..3685258	-	54	188582697	-	Mpop_3456	-	conserved protein CoxF
3412	 69.81	0	3685267..3686220	-	317	188582698	-	Mpop_3457	-	protoheme IX farnesyltransferase
3413	 65.32	-1	3686419..3688047	-	542	188582699	-	Mpop_3458	-	cytochrome c oxidase, subunit I
3414	 66.55	0	3688127..3688966	-	279	188582700	-	Mpop_3459	-	cytochrome c oxidase, subunit II
3415	 72.03	0	3689222..3690097	+	291	188582701	-	Mpop_3460	-	formate dehydrogenase family accessory protein FdhD
3416	 74.77	+1	3690125..3691198	-	357	188582702	-	Mpop_3461	-	putative exported protein of unknown function
3417	 68.08	0	3691844..3696577	+	1577	188582703	-	Mpop_3462	-	Glutamate synthase (ferredoxin)
3418	 68.35	0	3696593..3696829	+	78	188582704	-	Mpop_3463	-	virulence-associated protein-like protein
3419	 69.67	0	3697368..3698801	+	477	188582705	-	Mpop_3465	-	glutamate synthase, NADH/NADPH, small subunit
3420	 74.71	+1	3698874..3699818	-	314	188582706	-	Mpop_3466	-	beta-lactamase domain protein
3421	 75.62	+1	3699997..3701337	+	446	188582707	-	Mpop_3467	-	putative signal transduction histidine kinase
3422	 72.27	0	3701346..3702005	+	219	188582708	-	Mpop_3468	-	two component transcriptional regulator, LuxR family
3423	 74.50	+1	3702130..3703572	-	480	188582709	-	Mpop_3469	-	protein of unknown function DUF459
3424	 73.57	0	3703650..3704852	-	400	188582710	-	Mpop_3470	-	lytic murein transglycosylase
3425	 69.28	0	3704849..3705841	-	330	188582711	-	Mpop_3471	-	UDP-glucose 4-epimerase
3426	 67.24	0	3706017..3706883	+	288	188582712	-	Mpop_3472	-	UTP-glucose-1-phosphate uridylyltransferase
3427	 69.34	0	3707151..3708047	-	298	188582713	-	Mpop_3473	-	N-formylglutamate amidohydrolase
3428	 63.59	-1	3708377..3708733	+	118	188582714	-	Mpop_3474	-	response regulator receiver protein
3429	 70.16	0	3708854..3709111	+	85	188582715	-	Mpop_3475	-	glutaredoxin 3
3430	 71.63	0	3709108..3709953	+	281	188582716	-	Mpop_3476	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3431	 73.21	0	3709974..3710447	+	157	188582717	-	Mpop_3477	-	protein of unknown function DUF1178
3432	 70.89	0	3710470..3711534	-	354	188582718	-	Mpop_3478	-	putative signal transduction histidine kinase
3433	 66.67	0	3711555..3711656	-	33	188582719	-	Mpop_3479	-	hypothetical protein
3434	 68.64	0	3711743..3712402	+	219	188582720	-	Mpop_3480	-	peptide methionine sulfoxide reductase
3435	 61.90	-1	3712509..3713012	+	167	188582721	-	Mpop_3481	-	hypothetical protein
3436	 64.55	-1	3713046..3713471	-	141	188582722	-	Mpop_3482	-	hypothetical protein
3437	 56.19	-2	3713468..3713782	-	104	188582723	-	Mpop_3483	-	hypothetical protein
3438	 74.19	+1	3713851..3714780	-	309	188582724	-	Mpop_3484	-	peptidase U6 penicillin-insensitive murein endopeptidase
3439	 70.34	0	3714891..3715298	+	135	188582725	-	Mpop_3485	-	PRC-barrel domain protein
3440	 70.11	0	3715306..3715653	-	115	188582726	-	Mpop_3486	-	hypothetical protein
3441	 72.14	0	3715829..3717016	-	395	188582727	-	Mpop_3487	-	Na+/H+ antiporter NhaA
3442	 73.27	0	3717066..3717716	-	216	188582728	-	Mpop_3488	-	Redoxin domain protein
3443	 70.55	0	3717756..3719147	+	463	188582729	-	Mpop_3489	-	argininosuccinate lyase
3444	 70.26	0	3719245..3719550	+	101	188582730	-	Mpop_3490	-	hypothetical protein
3445	 71.24	0	3719719..3720396	+	225	188582731	-	Mpop_3491	-	hypothetical protein
3446	 73.73	0	3720577..3720831	-	84	188582732	-	Mpop_3492	-	hypothetical protein
3447	 69.72	0	3721324..3722010	-	228	188582733	-	Mpop_3493	-	HAD-superfamily hydrolase, subfamily IA, variant 3
3448	 71.19	0	3722104..3723873	+	589	188582734	-	Mpop_3494	-	Carbamoyltransferase
3449	 75.44	+1	3723916..3724257	-	113	188582735	-	Mpop_3495	-	hypothetical protein
3450	 67.41	0	3724370..3725044	-	224	188582736	-	Mpop_3496	-	haloacid dehalogenase, type II
3451	 72.61	0	3725075..3726604	-	509	188582737	-	Mpop_3497	-	integral membrane protein MviN
3452	 63.33	-1	3726891..3727490	-	199	188582738	-	Mpop_3498	-	Superoxide dismutase
3453	 76.15	+1	3727853..3728875	+	340	188582739	-	Mpop_3499	-	hypothetical protein
3454	 71.97	0	3729483..3731234	-	583	188582740	-	Mpop_3500	-	signal transduction histidine kinase
3455	 73.31	0	3731342..3732274	-	310	188582741	-	Mpop_3501	-	glycosyl transferase family 2
3456	 74.28	+1	3732271..3733176	-	301	188582742	-	Mpop_3502	-	rhamnosyltransferase
3457	 73.90	+1	3733247..3734683	-	478	188582743	-	Mpop_3503	-	peptidase M48 Ste24p
3458	 75.84	+1	3734783..3735643	-	286	188582744	-	Mpop_3504	-	hypothetical protein
3459	 61.03	-2	3736381..3736788	+	135	188582745	-	Mpop_3505	-	transcriptional regulator, XRE family
3460	 68.54	0	3736998..3738173	+	391	188582746	-	Mpop_3506	-	Methionine adenosyltransferase
3461	 72.76	0	3738183..3738920	+	245	188582747	-	Mpop_3507	-	tRNA (guanine-N(7)-)-methyltransferase
3462	 69.23	0	3739154..3741883	-	909	188582748	-	Mpop_3508	-	DNA topoisomerase I
3463	 69.59	0	3742033..3742989	-	318	188582749	-	Mpop_3509	-	oxidoreductase molybdopterin binding
3464	 67.58	0	3742986..3743858	-	290	188582750	-	Mpop_3510	-	putative transmembrane b-type cytochrome protein
3465	 64.67	-1	3744022..3744321	-	99	188582751	-	Mpop_3511	-	hypothetical protein
3466	 68.57	0	3744595..3745542	+	315	188582752	-	Mpop_3512	-	aspartate carbamoyltransferase
3467	 71.27	0	3745807..3747108	+	433	188582753	-	Mpop_3513	-	dihydroorotase, multifunctional complex type
3468	 72.09	0	3747105..3747713	+	202	188582754	-	Mpop_3514	-	protein of unknown function DUF205
3469	 73.12	0	3747744..3748937	+	397	188582755	-	Mpop_3515	-	DNA protecting protein DprA
3470	 73.67	0	3749262..3750089	+	275	188582756	-	Mpop_3516	-	lipolytic protein G-D-S-L family
3471	 70.69	0	3750086..3751252	+	388	188582757	-	Mpop_3517	-	hypothetical protein
3472	 73.72	0	3751280..3751960	+	226	188582758	-	Mpop_3518	-	ThiJ/PfpI domain protein
3473	 72.29	0	3752059..3752556	-	165	188582759	-	Mpop_3519	-	Holliday junction resolvase YqgF
3474	 70.64	0	3752553..3753131	-	192	188582760	-	Mpop_3520	-	hypothetical protein
3475	 68.42	0	3753358..3753471	+	37	188582761	-	Mpop_3521	-	hypothetical protein
3476	 65.62	-1	3753622..3753909	+	95	188582762	-	Mpop_3522	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
3477	 69.91	0	3754000..3755481	+	493	188582763	-	Mpop_3523	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
3478	 69.93	0	3755478..3755783	+	101	188582764	-	Mpop_3524	-	hypothetical protein
3479	 64.35	-1	3755848..3756279	-	143	188582765	-	Mpop_3525	-	Excinuclease ABC C subunit domain protein
3480	 66.64	0	3756317..3759487	-	1056	188582766	-	Mpop_3526	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
3481	 70.54	0	3759566..3760906	-	446	188582767	-	Mpop_3527	-	efflux transporter, RND family, MFP subunit
3482	 72.49	0	3761349..3761777	-	142	188582768	-	Mpop_3528	-	hypothetical protein
3483	 71.33	0	3762023..3762622	+	199	188582769	-	Mpop_3529	-	ErfK/YbiS/YcfS/YnhG family protein
3484	 63.53	-1	3763763..3764464	+	233	188582770	-	Mpop_3531	-	Undecaprenyl-phosphate galactose phosphotransferase
3485	 68.63	0	3764662..3765831	+	389	188582771	-	Mpop_3532	-	glycosyl transferase group 1
3486	 71.55	0	3765862..3766824	+	320	188582772	-	Mpop_3533	-	lipopolysaccharide biosynthesis protein
3487	 69.57	0	3766821..3768128	+	435	188582773	-	Mpop_3534	-	polysaccharide export protein
3488	 68.48	0	3768138..3769574	+	478	188582774	-	Mpop_3535	-	hypothetical protein
3489	 70.91	0	3769878..3771008	+	376	188582775	-	Mpop_3536	-	glycosyl transferase group 1
3490	 69.97	0	3771127..3772035	+	302	188582776	-	Mpop_3537	-	glycosyl transferase family 2
3491	 71.34	0	3772032..3773723	+	563	188582777	-	Mpop_3538	-	lipopolysaccharide biosynthesis protein
3492	 74.05	+1	3773710..3774996	+	428	188582778	-	Mpop_3539	-	polysaccharide pyruvyl transferase
3493	 74.38	+1	3774993..3776288	+	431	188582779	-	Mpop_3540	-	glycosyl transferase group 1
3494	 57.45	-2	3776623..3777219	+	198	188582780	-	Mpop_3541	-	transferase hexapeptide repeat containing protein
3495	 70.13	0	3777280..3778146	-	288	188582781	-	Mpop_3542	-	glycoside hydrolase family 16
3496	 72.67	0	3778143..3779291	-	382	188582782	-	Mpop_3543	-	putative glycosyl transferase
3497	 71.69	0	3779647..3781239	+	530	188582783	-	Mpop_3544	-	polysaccharide biosynthesis protein
3498	 66.20	0	3781385..3782026	+	213	188582784	-	Mpop_3545	-	hypothetical protein
3499	 63.70	-1	3782160..3782462	-	100	188582785	-	Mpop_3546	-	hypothetical protein
3500	 67.74	0	3782732..3782917	-	61	188582786	-	Mpop_3547	-	hypothetical protein
3501	 66.32	0	3783007..3784467	-	486	188582787	-	Mpop_3548	-	glycoside hydrolase family 16
3502	 54.52	-2	3784989..3785828	+	279	188582788	-	Mpop_3549	-	methyltransferase FkbM family
3503	 70.13	0	3785916..3787358	-	480	188582789	-	Mpop_3550	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
3504	 63.43	-1	3787607..3788038	-	143	188582790	-	Mpop_3551	-	response regulator receiver protein
3505	 68.58	0	3788401..3789969	+	522	188582791	-	Mpop_3552	-	phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
3506	 72.57	0	3789980..3790453	-	157	188582792	-	Mpop_3553	-	carbon monoxide dehydrogenase subunit G
3507	 70.64	0	3790481..3791185	-	234	188582793	-	Mpop_3554	-	ABC transporter related
3508	 70.04	0	3791178..3791948	-	256	188582794	-	Mpop_3555	-	ABC transporter related
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.