IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3342	 66.55	0	3615000..3615890	+	296	188582628	-	Mpop_3387	-	dihydrodipicolinate synthase
3343	 66.03	0	3615962..3616435	+	157	188582629	-	Mpop_3388	-	SsrA-binding protein
3344	 64.37	-1	3616585..3617238	-	217	188582630	-	Mpop_3389	-	protein of unknown function DUF88
3345	 68.53	0	3617755..3618345	-	196	188582631	-	Mpop_3390	-	orotate phosphoribosyltransferase
3346	 70.68	0	3618426..3618749	-	107	188582632	-	Mpop_3391	-	hypothetical protein
3347	 68.73	0	3618902..3621133	-	743	188582633	-	Mpop_3392	-	(p)ppGpp synthetase I, SpoT/RelA
3348	 68.13	0	3621386..3621796	-	136	188582634	-	Mpop_3393	-	DNA-directed RNA polymerase, omega subunit
3349	 69.84	0	3622235..3622801	+	188	188582635	-	Mpop_3394	-	Scaffold protein Nfu/NifU
3350	 74.01	+1	3622978..3623658	+	226	188582636	-	Mpop_3395	-	peptidase M22 glycoprotease
3351	 70.88	0	3623655..3624176	+	173	188582637	-	Mpop_3396	-	GCN5-related N-acetyltransferase
3352	 74.06	+1	3624202..3625080	+	292	188582638	-	Mpop_3397	-	phospholipid/glycerol acyltransferase
3353	 70.75	0	3625085..3625525	-	146	188582639	-	Mpop_3398	-	MEKHLA domain protein
3354	 71.07	0	3625641..3626981	+	446	188582640	-	Mpop_3399	-	RNA modification enzyme, MiaB family
3355	 69.92	0	3627018..3628124	+	368	188582641	-	Mpop_3400	-	PhoH family protein
3356	 66.67	0	3628197..3628682	+	161	188582642	-	Mpop_3401	-	protein of unknown function UPF0054
3357	 71.52	0	3628719..3629873	+	384	188582643	-	Mpop_3402	-	CBS domain containing protein
3358	 74.13	+1	3629901..3631601	+	566	188582644	-	Mpop_3403	-	apolipoprotein N-acyltransferase
3359	 73.47	0	3631815..3632549	+	244	188582645	-	Mpop_3404	-	hypothetical protein
3360	 67.04	0	3632718..3634307	-	529	188582646	-	Mpop_3405	-	Catalase
3361	 73.49	0	3634455..3635465	+	336	188582647	-	Mpop_3406	-	transcriptional regulator, LysR family
3362	 74.16	+1	3635536..3636603	+	355	188582648	-	Mpop_3407	-	membrane protein AbrB duplication
3363	 69.28	0	3636600..3636944	+	114	188582649	-	Mpop_3408	-	diacylglycerol kinase
3364	 64.14	-1	3637030..3637227	-	65	188582650	-	Mpop_3409	-	hypothetical protein
3365	 61.19	-2	3637224..3637424	-	66	188582651	-	Mpop_3410	-	hypothetical protein
3366	 71.15	0	3637709..3638266	+	185	188582652	-	Mpop_3411	-	metallophosphoesterase
3367	 72.82	0	3638276..3639136	-	286	188582653	-	Mpop_3412	-	glutamate racemase
3368	 69.91	0	3639360..3640622	+	420	188582654	-	Mpop_3413	-	protein of unknown function DUF323
3369	 70.14	0	3640667..3641644	+	325	188582655	-	Mpop_3414	-	hypothetical protein
3370	 75.06	+1	3641785..3642213	+	142	188582656	-	Mpop_3415	-	hypothetical protein
3371	 68.93	0	3642227..3642667	-	146	188582657	-	Mpop_3416	-	protein of unknown function DUF779
3372	 71.58	0	3642892..3645579	+	895	188582658	-	Mpop_3417	-	Nitrate reductase
3373	 73.25	0	3645767..3647224	+	485	188582659	-	Mpop_3418	-	uroporphyrin-III C-methyltransferase
3374	 67.51	0	3647423..3648013	+	196	188582660	-	Mpop_3419	-	electron transport protein SCO1/SenC
3375	 69.58	0	3647958..3649808	-	616	188582661	-	Mpop_3420	-	glycosyl transferase family 2
3376	 68.30	0	3649929..3650849	+	306	188582662	-	Mpop_3421	-	extracellular solute-binding protein family 3
3377	 64.25	-1	3650948..3651154	+	68	188582663	-	Mpop_3422	-	hypothetical protein
3378	 66.18	0	3651194..3651607	-	137	188582664	-	Mpop_3423	-	hypothetical protein
3379	 70.49	0	3651697..3653607	-	636	188582665	-	Mpop_3424	-	cobalt chelatase, pCobT subunit
3380	 66.16	0	3653720..3654703	-	327	188582666	-	Mpop_3425	-	cobalt chelatase, pCobS small subunit
3381	 71.29	0	3655058..3655771	-	237	188582667	-	Mpop_3426	-	heat shock protein DnaJ domain protein
3382	 71.33	0	3655917..3656195	+	92	188582668	-	Mpop_3427	-	BolA family protein
3383	 74.18	+1	3656230..3656655	+	141	188582669	-	Mpop_3428	-	Class I peptide chain release factor
3384	 68.25	0	3656675..3657433	-	252	188582670	-	Mpop_3429	-	protein of unknown function DUF1275
3385	 72.32	0	3657475..3658464	-	329	188582671	-	Mpop_3430	-	Methyltransferase type 12
3386	 70.25	0	3658511..3659569	+	352	188582672	-	Mpop_3431	-	putative mRNA 3-end processing factor
3387	 70.94	0	3659566..3661296	+	576	188582673	-	Mpop_3432	-	ATP dependent DNA ligase
3388	 69.57	0	3661293..3661775	+	160	188582674	-	Mpop_3433	-	protein of unknown function UPF0047
3389	 70.02	0	3661782..3662228	-	148	188582675	-	Mpop_3434	-	protein of unknown function DUF606
3390	 73.40	0	3662353..3663243	+	296	188582676	-	Mpop_3435	-	transcriptional regulator, LysR family
3391	 58.79	-2	3663250..3663414	-	54	188582677	-	Mpop_3436	-	protein of unknown function UPF0057
3392	 68.07	0	3663515..3665716	-	733	188582678	-	Mpop_3437	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
3393	 71.18	0	3665838..3666635	+	265	188582679	-	Mpop_3438	-	diguanylate phosphodiesterase
3394	 66.08	0	3666690..3667199	-	169	188582680	-	Mpop_3439	-	hypothetical protein
3395	 70.06	0	3667325..3668533	-	402	188582681	-	Mpop_3440	-	acetyl-CoA acetyltransferase
3396	 68.68	0	3668616..3670406	-	596	188582682	-	Mpop_3441	-	acyl-CoA dehydrogenase domain protein
3397	 75.70	+1	3670751..3674017	+	1088	188582683	-	Mpop_3442	-	Sel1 domain protein repeat-containing protein
3398	 73.09	0	3674486..3674812	+	108	188582684	-	Mpop_3443	-	hypothetical protein
3399	 70.58	0	3674884..3675828	-	314	188582685	-	Mpop_3444	-	hypothetical protein
3400	 70.91	0	3675965..3676483	+	172	188582686	-	Mpop_3445	-	hypothetical protein
3401	 71.39	0	3676480..3677283	+	267	188582687	-	Mpop_3446	-	phosphoesterase PA-phosphatase related
3402	 72.55	0	3677325..3678632	+	435	188582688	-	Mpop_3447	-	oxidoreductase domain protein
3403	 70.07	0	3678683..3678829	-	48	188582689	-	Mpop_3448	-	hypothetical protein
3404	 71.53	0	3678908..3680203	-	431	188582690	-	Mpop_3449	-	processing peptidase
3405	 69.50	0	3680210..3681622	-	470	188582691	-	Mpop_3450	-	threonine synthase
3406	 71.26	0	3681708..3682121	-	137	188582692	-	Mpop_3451	-	hypothetical protein
3407	 71.21	0	3682207..3682977	-	256	188582693	-	Mpop_3452	-	Surfeit locus 1 family protein
3408	 68.80	0	3682977..3683351	-	124	188582694	-	Mpop_3453	-	protein of unknown function DUF983
3409	 66.20	0	3683471..3684328	-	285	188582695	-	Mpop_3454	-	cytochrome c oxidase subunit III
3410	 68.14	0	3684473..3685081	-	202	188582696	-	Mpop_3455	-	cytochrome c oxidase assembly protein CtaG/Cox11
3411	 68.48	0	3685094..3685258	-	54	188582697	-	Mpop_3456	-	conserved protein CoxF
3412	 69.81	0	3685267..3686220	-	317	188582698	-	Mpop_3457	-	protoheme IX farnesyltransferase
3413	 65.32	-1	3686419..3688047	-	542	188582699	-	Mpop_3458	-	cytochrome c oxidase, subunit I
3414	 66.55	0	3688127..3688966	-	279	188582700	-	Mpop_3459	-	cytochrome c oxidase, subunit II
3415	 72.03	0	3689222..3690097	+	291	188582701	-	Mpop_3460	-	formate dehydrogenase family accessory protein FdhD
3416	 74.77	+1	3690125..3691198	-	357	188582702	-	Mpop_3461	-	putative exported protein of unknown function
3417	 68.08	0	3691844..3696577	+	1577	188582703	-	Mpop_3462	-	Glutamate synthase (ferredoxin)
3418	 68.35	0	3696593..3696829	+	78	188582704	-	Mpop_3463	-	virulence-associated protein-like protein
3419	 69.67	0	3697368..3698801	+	477	188582705	-	Mpop_3465	-	glutamate synthase, NADH/NADPH, small subunit
3420	 74.71	+1	3698874..3699818	-	314	188582706	-	Mpop_3466	-	beta-lactamase domain protein
3421	 75.62	+1	3699997..3701337	+	446	188582707	-	Mpop_3467	-	putative signal transduction histidine kinase
3422	 72.27	0	3701346..3702005	+	219	188582708	-	Mpop_3468	-	two component transcriptional regulator, LuxR family
3423	 74.50	+1	3702130..3703572	-	480	188582709	-	Mpop_3469	-	protein of unknown function DUF459
3424	 73.57	0	3703650..3704852	-	400	188582710	-	Mpop_3470	-	lytic murein transglycosylase
3425	 69.28	0	3704849..3705841	-	330	188582711	-	Mpop_3471	-	UDP-glucose 4-epimerase
3426	 67.24	0	3706017..3706883	+	288	188582712	-	Mpop_3472	-	UTP-glucose-1-phosphate uridylyltransferase
3427	 69.34	0	3707151..3708047	-	298	188582713	-	Mpop_3473	-	N-formylglutamate amidohydrolase
3428	 63.59	-1	3708377..3708733	+	118	188582714	-	Mpop_3474	-	response regulator receiver protein
3429	 70.16	0	3708854..3709111	+	85	188582715	-	Mpop_3475	-	glutaredoxin 3
3430	 71.63	0	3709108..3709953	+	281	188582716	-	Mpop_3476	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3431	 73.21	0	3709974..3710447	+	157	188582717	-	Mpop_3477	-	protein of unknown function DUF1178
3432	 70.89	0	3710470..3711534	-	354	188582718	-	Mpop_3478	-	putative signal transduction histidine kinase
3433	 66.67	0	3711555..3711656	-	33	188582719	-	Mpop_3479	-	hypothetical protein
3434	 68.64	0	3711743..3712402	+	219	188582720	-	Mpop_3480	-	peptide methionine sulfoxide reductase
3435	 61.90	-1	3712509..3713012	+	167	188582721	-	Mpop_3481	-	hypothetical protein
3436	 64.55	-1	3713046..3713471	-	141	188582722	-	Mpop_3482	-	hypothetical protein
3437	 56.19	-2	3713468..3713782	-	104	188582723	-	Mpop_3483	-	hypothetical protein
3438	 74.19	+1	3713851..3714780	-	309	188582724	-	Mpop_3484	-	peptidase U6 penicillin-insensitive murein endopeptidase
3439	 70.34	0	3714891..3715298	+	135	188582725	-	Mpop_3485	-	PRC-barrel domain protein
3440	 70.11	0	3715306..3715653	-	115	188582726	-	Mpop_3486	-	hypothetical protein
3441	 72.14	0	3715829..3717016	-	395	188582727	-	Mpop_3487	-	Na+/H+ antiporter NhaA
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.