IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2936	 70.54	0	3210177..3210692	+	171	188582222	-	Mpop_2977	-	TspO and MBR like protein
2937	 71.96	0	3210775..3212172	-	465	188582223	-	Mpop_2978	-	FAD linked oxidase domain protein
2938	 69.46	0	3212189..3213439	-	416	188582224	-	Mpop_2979	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2939	 68.85	0	3213717..3214082	-	121	188582225	-	Mpop_2980	-	response regulator receiver protein
2940	 67.72	0	3214246..3214815	-	189	188582226	-	Mpop_2981	-	hypoxanthine phosphoribosyltransferase
2941	 74.29	+1	3215169..3215903	-	244	188582227	-	Mpop_2982	-	MJ0042 family finger-like protein
2942	 69.75	0	3216058..3216771	+	237	188582228	-	Mpop_2983	-	cell division ATP-binding protein FtsE
2943	 72.74	0	3216768..3217739	+	323	188582229	-	Mpop_2984	-	protein of unknown function DUF214
2944	 69.22	0	3217986..3218690	+	234	188582230	-	Mpop_2985	-	protein of unknown function DUF218
2945	 69.60	0	3218795..3219169	-	124	188582231	-	Mpop_2986	-	response regulator receiver protein
2946	 72.04	0	3219404..3220594	+	396	188582232	-	Mpop_2987	-	glutamate 5-kinase
2947	 71.98	0	3220743..3222041	+	432	188582233	-	Mpop_2988	-	gamma-glutamyl phosphate reductase
2948	 73.73	+1	3222205..3222657	+	150	188582234	-	Mpop_2989	-	cytidylyltransferase
2949	 68.14	0	3222672..3223145	+	157	188582235	-	Mpop_2990	-	iojap-like protein
2950	 72.75	0	3223149..3223838	-	229	188582236	-	Mpop_2991	-	hypothetical protein
2951	 67.56	0	3223883..3224443	-	186	188582237	-	Mpop_2992	-	conserved hypothetical protein; putative transcriptional regulatory protein
2952	 68.88	0	3224533..3225573	-	346	188582238	-	Mpop_2993	-	Aldose 1-epimerase
2953	 62.70	-1	3225658..3225783	-	41	188582239	-	Mpop_2994	-	hypothetical protein
2954	 62.35	-1	3225780..3226034	-	84	188582240	-	Mpop_2995	-	hypothetical protein
2955	 71.25	0	3226034..3227824	-	596	188582241	-	Mpop_2996	-	ABC transporter related
2956	 74.44	+1	3227915..3228454	-	179	188582242	-	Mpop_2997	-	conserved hypothetical protein; putative signal peptide
2957	 68.70	0	3228642..3229577	+	311	188582243	-	Mpop_2998	-	periplasmic solute binding protein
2958	 68.65	0	3229629..3229880	-	83	188582244	-	Mpop_2999	-	molybdopterin converting factor, subunit 1
2959	 69.50	0	3229935..3230534	-	199	188582245	-	Mpop_3000	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2960	 68.33	0	3230620..3232722	-	700	188582246	-	Mpop_3001	-	excinuclease ABC, C subunit
2961	 64.74	-1	3232746..3233471	-	241	188582247	-	Mpop_3002	-	putative chemotaxis phosphatase, CheZ
2962	 72.18	0	3233701..3234426	+	241	188582248	-	Mpop_3003	-	ErfK/YbiS/YcfS/YnhG family protein
2963	 72.64	0	3234502..3235254	-	250	188582249	-	Mpop_3004	-	putative periplasmic ligand-binding sensor protein
2964	 69.53	0	3235480..3236352	-	290	188582250	-	Mpop_3005	-	porin
2965	 67.58	0	3236750..3237517	-	255	188582251	-	Mpop_3006	-	protein of unknown function DUF152
2966	 74.20	+1	3237544..3238632	-	362	188582252	-	Mpop_3007	-	protein of unknown function DUF185
2967	 68.91	0	3238635..3239525	-	296	188582253	-	Mpop_3008	-	prolipoprotein diacylglyceryl transferase
2968	 71.07	0	3239666..3240346	+	226	188582254	-	Mpop_3009	-	MgtC/SapB transporter
2969	 70.22	0	3240450..3242081	+	543	188582255	-	Mpop_3010	-	phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
2970	 71.37	0	3242078..3243352	+	424	188582256	-	Mpop_3011	-	hypothetical protein
2971	 70.97	0	3243378..3244283	-	301	188582257	-	Mpop_3012	-	cell wall hydrolase SleB
2972	 69.38	0	3244390..3244647	-	85	188582258	-	Mpop_3013	-	hypothetical protein
2973	 67.53	0	3244864..3247530	-	888	188582259	-	Mpop_3014	-	pyruvate, phosphate dikinase
2974	 62.75	-1	3247806..3247958	-	50	188582260	-	Mpop_3015	-	hypothetical protein
2975	 67.39	0	3248066..3248761	-	231	188582261	-	Mpop_3016	-	ErfK/YbiS/YcfS/YnhG family protein
2976	 68.47	0	3248961..3249404	+	147	188582262	-	Mpop_3017	-	Glyoxalase/bleomycin resistance protein/dioxygenase
2977	 68.97	0	3249523..3249783	+	86	188582263	-	Mpop_3018	-	hypothetical protein
2978	 68.00	0	3249831..3250280	-	149	188582264	-	Mpop_3019	-	cyclic nucleotide-binding protein
2979	 69.08	0	3250454..3250702	-	82	188582265	-	Mpop_3020	-	hypothetical protein
2980	 68.03	0	3250948..3251094	+	48	188582266	-	Mpop_3021	-	hypothetical protein
2981	 68.57	0	3251215..3251688	-	157	188582267	-	Mpop_3022	-	transcriptional regulator, TrmB
2982	 71.41	0	3251807..3252586	+	259	188582268	-	Mpop_3023	-	hypothetical protein
2983	 72.67	0	3252599..3253531	-	310	188582269	-	Mpop_3024	-	beta-lactamase domain protein
2984	 74.25	+1	3253606..3254634	-	342	188582270	-	Mpop_3025	-	hypothetical protein
2985	 68.68	0	3255336..3256679	+	447	188582271	-	Mpop_3026	-	transposase IS4 family protein
2986	 66.67	0	3257106..3257282	+	58	188582272	-	Mpop_3027	-	protein of unknown function DUF1328
2987	 65.32	-1	3257356..3257577	-	73	188582273	-	Mpop_3028	-	hypothetical protein
2988	 66.04	0	3257757..3258560	+	267	188582274	-	Mpop_3029	-	response regulator receiver protein
2989	 74.38	+1	3259014..3259376	+	120	188582275	-	Mpop_3030	-	hypothetical protein
2990	 70.74	0	3259395..3259934	-	179	188582276	-	Mpop_3031	-	protein of unknown function UPF0153
2991	 68.75	0	3260054..3261445	+	463	188582277	-	Mpop_3032	-	aminotransferase class-III
2992	 72.69	0	3261779..3261994	+	71	188582278	-	Mpop_3033	-	hypothetical protein
2993	 71.58	0	3262032..3262946	+	304	188582279	-	Mpop_3034	-	metallophosphoesterase
2994	 72.15	0	3262959..3263177	-	72	188582280	-	Mpop_3035	-	hypothetical protein
2995	 68.24	0	3263234..3263488	-	84	188582281	-	Mpop_3036	-	GCN5-related N-acetyltransferase
2996	 73.65	0	3263485..3264615	-	376	188582282	-	Mpop_3037	-	AlkA domain protein
2997	 65.97	0	3264665..3264952	-	95	188582283	-	Mpop_3038	-	hypothetical protein
2998	 68.74	0	3265109..3266263	-	384	188582284	-	Mpop_3039	-	ribonuclease D
2999	 75.90	+1	3266358..3266747	-	129	188582285	-	Mpop_3040	-	hypothetical protein
3000	 69.77	0	3266917..3268173	+	418	188582286	-	Mpop_3041	-	Serine-type D-Ala-D-Ala carboxypeptidase
3001	 74.38	+1	3268402..3270306	-	634	188582287	-	Mpop_3042	-	AsmA family protein
3002	 66.80	0	3270642..3271409	+	255	188582288	-	Mpop_3043	-	3-oxoacid CoA-transferase, A subunit
3003	 65.15	-1	3271445..3272170	+	241	188582289	-	Mpop_3044	-	3-oxoacid CoA-transferase, B subunit
3004	 72.79	0	3272345..3272752	+	135	188582290	-	Mpop_3045	-	hypothetical protein
3005	 75.96	+1	3272857..3273222	+	121	188582291	-	Mpop_3046	-	hypothetical protein
3006	 72.21	0	3273261..3274631	+	456	188582292	-	Mpop_3047	-	PepSY-associated TM helix domain protein
3007	 69.46	0	3274694..3277018	+	774	188582293	-	Mpop_3048	-	TonB-dependent receptor
3008	 73.38	0	3277062..3278000	-	312	188582294	-	Mpop_3049	-	hypothetical protein
3009	 64.61	-1	3278146..3278388	+	80	188582295	-	Mpop_3050	-	prevent-host-death family protein
3010	 63.85	-1	3278388..3278813	+	141	188582296	-	Mpop_3051	-	PilT protein domain protein
3011	 62.19	-1	3279104..3279550	-	148	188582297	-	Mpop_3052	-	hypothetical protein
3012	 66.89	0	3279722..3280162	+	146	188582298	-	Mpop_3053	-	hypothetical protein
3013	 62.76	-1	3280181..3281077	-	298	188582299	-	Mpop_3054	-	Exonuclease RNase T and DNA polymerase III
3014	 59.50	-2	3281104..3282930	-	608	188582300	-	Mpop_3055	-	UvrD/REP helicase
3015	 58.21	-2	3282942..3284738	-	598	188582301	-	Mpop_3056	-	ATP-dependent endonuclease family protein
3016	 66.18	0	3284752..3285768	-	338	188582302	-	Mpop_3057	-	protein of unknown function DUF1814
3017	 69.36	0	3285761..3286354	-	197	188582303	-	Mpop_3058	-	hypothetical protein
3018	 68.03	0	3286588..3287538	+	316	188582304	-	Mpop_3059	-	protein of unknown function DUF1738
3019	 67.13	0	3287698..3289842	+	714	188582305	-	Mpop_3060	-	ParB domain protein nuclease
3020	 66.22	0	3289903..3290124	+	73	188582306	-	Mpop_3061	-	hypothetical protein
3021	 65.71	0	3290190..3290606	+	138	188582307	-	Mpop_3062	-	hypothetical protein
3022	 67.42	0	3290603..3290866	+	87	188582308	-	Mpop_3063	-	hypothetical protein
3023	 64.65	-1	3290863..3291159	+	98	188582309	-	Mpop_3064	-	hypothetical protein
3024	 68.21	0	3291308..3295654	+	1448	188582310	-	Mpop_3065	-	probably methylase/helicase
3025	 66.95	0	3295654..3296694	+	346	188582311	-	Mpop_3066	-	hypothetical protein
3026	 66.58	0	3296728..3297933	+	401	188582312	-	Mpop_3067	-	hypothetical protein
3027	 62.50	-1	3298218..3298385	+	55	188582313	-	Mpop_3068	-	hypothetical protein
3028	 66.44	0	3298529..3298969	+	146	188582314	-	Mpop_3069	-	hypothetical protein
3029	 66.98	0	3299541..3299864	+	107	188582315	-	Mpop_3070	-	protein of unknown function DUF736
3030	 61.96	-1	3300046..3300300	+	84	188582316	-	Mpop_3071	-	transcriptional regulator, XRE family
3031	 63.30	-1	3300399..3300665	+	88	188582317	-	Mpop_3072	-	hypothetical protein
3032	 60.84	-2	3300780..3301088	+	102	188582318	-	Mpop_3073	-	hypothetical protein
3033	 62.92	-1	3301021..3301554	+	177	188582319	-	Mpop_3074	-	hypothetical protein
3034	 69.86	0	3301694..3301975	+	93	188582320	-	Mpop_3075	-	putative transcriptional regulator
3035	 64.34	-1	3301994..3303154	+	386	188582321	-	Mpop_3076	-	replication protein A
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.